RNA id: XM_036949787.1


Basic Information

Item Value
RNA id XM_036949787.1
length 5313
RNA type mRNA
GC content 0.49
exon number 24
gene id osbpl5
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48027409 ~ 48133974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACCGTCACGTAACGAAGCAAACGTTGAAGTGAACTGAACTAACCCATGaaccacctctctctgccattGCAGTCATATCAACATACGGGAAAATGCGATGAGAAGTCGTGCTGGTGTACCGGTATCCGACTTTGAATGCCAAGTGTGAGACATCGAATTGCGTGATCGGTGGCGTAACAGgTAAGGCAGACTGTTCTTACGTAGGCTTCTGGATGTGGTATCCTGTGCTGCTCAGGTGAAAGATCAGTGCTCTTCGACCCGTCGTGGAACGCCACATGAAGGAAGAAAGAAGAGCAGCAAGGGAGGGGCTGGAAGGAAGAGTAGGCAGCAGACAGGATGAAGGAGGAGAACTTGTTTCATCGGAGGATGTCTCTGTCTCCCAATGCcacatctccctcccctcctaaGATCGACCACCGCTCTCTGACCCGCAACATGTCTTATGGAGGAGAAAGCGAGCTCTTCCCGCTCAGCCCAGGTATGGAGGCAGAAGGGAATGGTCTGTCCATGATGAGTGACGAGCTCAGCCCCGCCCAGTCGCCTAGCAGCAAGtctGAGTCCAGGATGTTCAATAACGGTCTGGAGGACTGCTCCTCCCCCACAGAGAAGCTGGCCCGGAAGGAGTCTCTCAAGGTCCAGAAGAAGAATTACAGACAGGAGAAGAAGCGGGCAGCCAAAGAACTGTCAAGCGCTCTGAAGGACCCCAGTGTTGTCATCACGGCTAACTGGCTAAAGATCCGTGGTTCGCTAAAGAGCTGGACCAAGCTGTGGTGTGCCCTGAAGCCGGGGGTCCTGCTGATCTATAAGACCCCTAAATCGGACCACTGGGTGGGCACCCTCCTGCTCAACGCGTGCAAGCTGATTGAGAGGCCCTCCAAGAAGGACGGCTTCTGCTTCAAGCTCTACCACCCGCTGGACAAGTCCATCTGGGCTGTTAAGGGTCCTAAAGGGGAAAATGTTGGCTCCATCACTCAACCTCTACCCAGCAACTACCTGATCTTCAGAGCTGCGTCAGAGTCTGACGgTCGGTGTTGGATGGATGCTCTGGAGCTGGCTCTGAGCTGCTCCAGCCTCTACAAGCTGACAGCTAAAGCAGGGAGAGACGGAGACCTCAGCACCTCCTCGGAGTCCTCCCATATACTACAGCTACTGCAGTCTACTGCCCTCACTGATGCTGAGCTACTACAGTTGGCCAACCAACAGATGGAGAATGACGGCTACTCTGAGAAATCAGAGCACGATGCCCAGGAGGATTGGGACAACGGGGCAAATGAGAACGGAGGTCGGCTGACGGAGGAGAGCGACATGGACCAATCGGACGAGCTGTCTCCGGGGCTGCAGGCCACATCCTACGTCGAGCAGAGCCAGGAGGAGATGGCCGAGGCTGGTGAGGCGTCCCAGGTGGAGACGGTGTCTGAGGAGAACAAGGGTCTGATCTGGACCCTGCTAAAGCAGCTGCGGCCTGGCATGGACCTGTCTAAAGTGGTCTTGCCCACCTTCATCCTGGAGCCACGCTCTTTCCTGGACAAACTATCAGACTACTACTACCACGCTAATCTGCTGTCAGAGGCTGCGAGGGAGGAGAGTCCATATGGCAGAATAAAGCAGGTCGTGCGCTGGTACCTGTCTGGCTTCTACAAGAAGCCCAAGGGACTGAAGAAGCCCTATAACCCCATCCTAGGAGAGACGTTTCGCTGTTGCTGGCTccaccctcagacagacagctgcACCTTTTACATCGCAGAGCAGAtctcccaccacccaccaatcTCTGCCTTCTACGTCTGCAACAAGAAGGACGGCTTCTATATCAGCGGCAGCATCTTGGCCAAGTCCAAGTTTTACGGTAACTCTCTGTCTGCCATACTGGATGGCAGGGCCAGATTGATGCTGCTGGGCAGGGATGAGGAGTACGTCATCACCATGCCTTACGCCCACTGTAAAGGTATTCTGTATGGCACCATGACactggagctgggagggaagATCACTATTGAGTGTGAGAAAACCAAATATGTGGCAGAACTGGAGTTCAAGTtgaagcCCTTCCTGGGAGGCTCCAGCAGTGTGAACGTGATCTCGGGGAAGATTCAGCAGGGAGACGAGCTGCTGGCCACTGTGGACGGACACTGGgaTGGTGAGGTGTTCCTACAGGAGAAGTCAGGGCAGCAGGAGCACCTGTGGAACCCTACTCCAGAGGTCCGCAGCACCAGACTGAAGAGGCAGGTGGTACAGCTGGACCAGCAAGGGCAGTTTGAGTCGGAgagGCTGTGGCAGCATGTGACCAGTGCTATAGTGGACCGTGACCAGAACCAGGCAACCCAGGAGAAGTTCGTACTGGAGGAGGCTCAGAGGAATCAGGCCAAAGACCGTGGAGACCAACCTTGGCGCCCCAGACTCTTCAACCTGGACTCTGTCACCAACgaatggacatacacacacatagacacaCGGCCGTGGGACCCTGAGCGCTGTCTGGTGCAGTTTGAGAAGCACGGGGTGATCCAGACCAAGGAGAAATCACAGAGACGACATAAAGGACTGGCGTACAGCCGCGCCTCAGCCTGGGCTAGCCAGCAGAAGGCCCAGGTGAATGGGAAACACAGGAAAGGCAGCAGCCAGCCGTCTAGCTGCAGCCAGAACACTGAGAGCAGCAGCACTACACCAGAACCTACACACGAGTCCTCTGATAATGAAGGTAAGACGCACACATTCACCACGTCAGAACCTACACACGAGTCCTCTGATAATGAAGGGTACCTGAGCCAGTGTACACGGTGCAACAAGGAAGTGAAGGACATTGCCCTCATAGAGGCCTCCATCGCATCCATACAGAAGACACAGCAAGACATCCAGAGGAACCTGATAGCGTTGGGTCGTCAACTGGGCCGTCGTCAGGAGACTGAGGACAATGTGACACCAACTGGACGCCACTGTTTCATCCTGTGTGTCCTCCTGCTCTCCCAACTCTTCCTCAACTATATTTTCACCTGAACTACCCTGCAACAgaagttacccccccccccaggcacGGATGTAGGATCAGCTCAACACTCCctattaaccctgaccttaactaTTAGATGGAGGGGCAGCTTCGTCCTGTTCTCCTGATACGGGAGGGCCACAGGTGCCATAGCAATAAACACAGCCACCCACAGCCACCACTCACCTGCCAACCAGAGCGGAGCAGAGCGCCCTCCAGTGTAGCCAGTCAGCATGGCACCCACGCACTTTGGACTGAGAAGACCACGACAGGAAGAGATCAAAAAAGAAAGAGTGGACTGACTGGGGGTGTTTTTTTAAAAGATGAATGAGAGAATAAGGACTGAATTAGCTTTTTTTTAATAGGAATGAGAAGGAATTATTGTTTTACAGAAGAGGATGTTCCACCTGTCTTTTATTAATGGATGTGTACTTTTTATACTCCCCCTGCAATactgttgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtacgtACAGTAGGCCCTATGGGCATTGATGGACTACGGCTTGGAGTCCTTAATAGTCCACCTTCACTACAGACTTTGGGCCTTAACGCTGAAGCCAAAAAGAAGTGAAAACAATGTGACATCGACAAAACAAAGTGAACTCGAGATAAGAAAAAGAAACTTCCAATAATGCAATTGTCTTTTTGTGTATATCTataatatgtcactttttgggcgatctgaccaaattcacatagaaatatgtGCTAGAGATCTGTCACTGATTGAAAGCAAGCCGTAGATATGTTCTATTGTGctttatttctatgcttcccatgtttttgcgtctttttgctttcggttttgtacactagcttcaaacagctgaaaatactaaatatatttgccagcggtttagatggtacaattatactctacactatacttgcttgttttgtcacataaactgaaatttggcgaattagaatttttgcaaccaggaaatgattTCTGCGTAGTGCATctttaataataatgatgatgatgattttaCCAAAACAGTATTTATAACCTGAAAGGTAAAGAGTACTTGTttacaggtttgtgtgtgtgtgtgtgttttatattgACATATATAAACGAAgggtaggcagagagaggcaggttaGAAAGGTAAAAGGGATGTGGGTCTGTCTGTATGCCTGTAGCGCCATCAGGGAATGGATTTATAGCACTGCTCTGGTGTAGACAATCAGCCAAAGAGGACAGATGATTGGCGGTGTAGAGAGAATGAACAGGGGAAGAGAAGAAAGGAAACAACGAAAGACTGTTAAAGGTATAGGGTAATGAGGTTGTTGATGGGTCGGGTGTGTAATGTACTTCAGACGGCACTGTTTGGAAGAACTGTTCTCGATGTAATTACTGGGGGTCAATATACCCATATGTATATATTTGtctggagcacacacacacacacaagcactgtGTTACCAATGAGATTCAGAATGTATTTATTGTGTGATTCACCTTGATTTATGGATCATACTCCGCTTGGAAGATGGATGCAAGTGGTGACAATCGCGAGTAAGTTTGTTCTCCCTTGTTCATTAGGTAGGCACCAAACaggaaaatggactgaaacagggagggacactGGACTTGACACTAATTTCTGTTctgttttaaaatgggttgtaCCCTATTGAACATGTACCAGGGGAACCAGGTCTGTGATCTAGCCTTGGGATGTTACTCGTACGTACGGACAGTCATGCAAGTTGGAGTCAAACATTAGGGTCAAAATTGAAAAACCAACCTCTTTGGTTGGTGTAAACTTGCCCTTGTCCAGGCACCCAATGGGGAAAAGGAGATGAAGGAAGTAGGAATTTGACTTTGGATGCTTTGATTCACGGTTTGTTCTATTTGTTTTGCACTCTACTGTCATGTACACAGATATTTTTGTCATATGAGAATGAAAGAACATGATTTTGCTAAATACCTGTTGCATACTGTAGCACTACAGTAAACATTGACATTTTGACTGGACACCCATTCTTGCTCTTTTGATTGAGTTTCTCCACAAAATGGTCAGTGCTGAAAGTCACGTCTGGTTATAAAGTGTCACAACGAAAGTCCTACAGCATAGCTAGTAGACACTAGGCAGGTTTCCATAGACCCAGGTTTATCCGACAAATGATGATGGAAACTGTTTTTTGAATAAATGATTGGCGAATAATTTAAGGTACGCCGGTCCCTTGATGTCATCACGTAACTATAAAACTCCACGTAATTGAATGATACATGCCTACTGCTTGCTAAATAAACAATGTCAACTACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173539 lncRNA upstream 97298 47929204 ~ 47930164 (+) True G151535
TU173535 lncRNA upstream 99769 47926931 ~ 47927693 (+) True G151533
TU173482 lncRNA upstream 163683 47863468 ~ 47863779 (+) True G151487
TU173481 lncRNA upstream 164300 47862901 ~ 47863162 (+) True G151486
TU173477 lncRNA upstream 166817 47860355 ~ 47860645 (+) True G151482
TU173655 lncRNA downstream 6624 48140598 ~ 48140921 (+) True G151643
TU173660 lncRNA downstream 13092 48147066 ~ 48147315 (+) True G151648
TU173920 lncRNA downstream 66611 48200585 ~ 48200786 (+) True G151890
TU173936 lncRNA downstream 83334 48217308 ~ 48217559 (+) True G151906
TU173947 lncRNA downstream 91310 48225284 ~ 48225603 (+) True G151917
NM_001124697.1 mRNA upstream 653763 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 822021 47134215 ~ 47205441 (+) False cpt1ab
XM_021564195.2 mRNA downstream 261009 48394983 ~ 48447787 (+) True fcsk
XR_005036978.1 mRNA downstream 278733 48412707 ~ 48417058 (+) True LOC118940424
XM_021564236.2 mRNA downstream 347554 48481528 ~ 48501880 (+) True prr5l
XM_021564280.2 mRNA downstream 602545 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564368.2 mRNA downstream 1615139 49749113 ~ 49767125 (+) True LOC110490948
TU172952 other upstream 479883 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 1042236 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2535083 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2554833 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 3155962 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 422808 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 1964442 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3031441 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3187822 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3278292 51412266 ~ 51417118 (+) True rl28

Expression Profile