RNA id: XM_021564195.2


Basic Information

Item Value
RNA id XM_021564195.2
length 4742
RNA type mRNA
GC content 0.53
exon number 23
gene id fcsk
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48394983 ~ 48447787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAATAAGGGagttatactccagtctagtaggtggcgatAATCAGCATTtaattggatgccaaccgccgttaatCCTCATCAAAGAAGAATAACTGGTCGCGCAAACGATTGATTTTGCGGTCTCCACTCATTCGGGAGCTACATTGTTGCAAGAATAGCACAGTGTAGTCTCTTTAGCTATTGCCTTGGTTGAACGGTTTTAGCATTGTTTGCATGGACGTAATGTTTGCTTCCTGTTACTTTCCGCCAATGGCGTTTTagtttagattggtaaattaggcTAAATGTTCCATGTATGAAGACAGCAGACTACTTTCGTGGCTCAATTGGAAGATATATTGTTTTCATAAATACGTCAACATGTCAAGCGAGCAGGTGTTCAGCTGGACTGTAGTAGTCCTGACCTGTCAACATAAAGATAGCGTTTACGCCTTTCAAAGAGaGCTGGAGGTCCGGCAGCAGCGTGGAGGTCTCTTACAGGGGACGTTACTGCTCACTGTGTCAGACCCCCAGGAGCCTGGACTGGGCAGTGGGGGAGCCACTCTCAATGCACTGCTGGTGGCAGCCGAGCACCTGAGTGCTAGAGCTGGATACACTGTTGTTACCGCGGATGTCCTTGACGATGCCCATATCCTGATCTTGCACACGGGACGTGACTTTCCCTGGGATAGCTGTGGCAGGGCCTTCTGCTGGCTACCTGTGGAAAAGCCAGCTCAGACTGTGCAGGGACCTGTCTGCTGCCTGGATATGCTGCTTGACTGCCTTTCCAATCAGGTGTGCCCTGGTTCTCCACCGGGTGTTTGGGTGTGCAGCACTGACATGATCCTGACCATGCCGACTACCTTCAAAATGTCATGGGAGGGTTTTTCTGGGGTCCGTGTGTTGGCACTACCTGGTGATGTCTCTTACGCCGCCAATCATGGAGTCTACTTTGCTGATGAGCAGGGTAGAGTACGTGACATCATCTACAAGGGGTCAGAGGAGCGGATTCGCCGAGCCGCACAGCCTGATGGGATGGTGCCACTGGTGTCAGGGCCTGTGTTCTTCTGCAGGAGGGTAGTCGAGCGATTGCTGAAGGCCCATGTTACCCCTCCCCTTGACGGCTGCACGTACATGGGCATGGACTCTGGGGCACCACCCATTCAGATCTCCCTCTTCCTGGATTTGTTGATGTGTCTTTGCTCAGACCTGAGTGAGTCAGAGTTTGTGAATGGTGAGAGGACGGGCTGCAGTTCCCCCATCAGTCAACAGGGAGCAGTAGTGAGGAGCGCACGGGCCTTGCTATGGAGGATACTGAGAGGCACTACTCTCCATATGGTTTACGTTCCTGGCGGTTGCTACGACTACCTGACTCTGTCCGGTAGAGAGCACATTGGCCGCCTGACaaagaaggggacagagagagacactttgTCACACATACAGAATACTCAGTGTGTGAGTGATGGAGGCAGGGTGATCAACAGTGTTCTGGAGGGGGACGTCATTGTTGCGTCAGGAGCAGTTATCCAGCACTGCCACCTTCAGGGACCAATGGATGTGCATTCAGGTTGTTTACTCTCAGGCCTGGAAGTGACCTCATCTTCGCACATCCAGCAGCTGGCCTTAACCAATGACCACATCATCCAAGGGCACCACATACAACTGGGAGAGATGAAGATTACTGTTTATACAGTGCTGGGGGCTTACGATGATCTTAAGGTTTCATGCAATGACGATGGTGCCACCTTTCTGAATCACAGATGGAGTGACCTCTACAGCCGCACTGGAATACAgCCTGAGGATCTGTGGGGGTCCGGGAGGTCCCAGTCACTCATGGAGGCCCGCCTGTTCCCAGTCTTCCAGCCGCGGGGTGGTGCGGTGGGGCTGGAGGTGGGGGTGTGCTGGCTGTTGGGTGGGCCGGGGGCACTGGAGCAGTGGAGGGCCGTGTGGAGGCTCTCTCTCCGAGAGGTCCTTTCCCTTACTGACCAGGAGGGGGAGCTGCGCTGGAGGGAGGCGCTATTCTTCcaggtggggaggaggagagtgatggacaaCTTGAAGAGCCAGAGCGATCGTGGGTTGTTACCCAGCTTCAGGGCTGCCGTGCTTGGAGGCCAGCATGAGGAGCTCCTCTGCACACTAGACTCCATTGCAGCGGGCAGCGGGGAGAACCTGGGAGTGGCGGCCCGCTGCCTGGCCTGTATAGCTGACGTGTTGGCCTGCCTGGCCGGGGAGGGCCGAGGGGGGCTGAGGAGCGGGCCGGCTGCTAACCCCGCCTGGAGCCATGCTTTCTCCATCCTGGAGCAGGGAGACCTGCTGGGTGGCGTCCAGGCCCTGGCCACCGAGAGAGCCAAGTGGCTCAGCAGGCCAGACCTGCTGGTGCGTGCTGCACGGCACTATGAGGCGGCCGGGCAGGTGCTGTTACGACAGGCTGTGATGTTATCACAGAGATTTATCTACATTGGTCAAGGTGAGGTCCCGCCCCTTGGGGAATGGCAAAATGTGGAGTGTCCTGCCAGACTGGACCTCTCAGGTGGCTGGAGCGACACTCCGCCCATTGCCTTTGAACATGGCGGCACAGTGGTCAACGTGGCAGTGAAGGTCGACGGGAGACGGCCCATTGGTGCCCGAGCTCGTCGCATCAAAGAGCCCCGTCTGCTATTGGTCAGTTCCAGCGGAGTGCAGGATGATGCTATCGCCATGGAGACAGTTTGCGAGAGGCTGGAGGATCTGAAAGACCACTGTGTGCCATATGCACCTGctgCCCTGTTGAAGGCAGTGTGTGTATGCAGCGGCCTGGTTACCTATCCCTCTCGGCAGTCCCTGGATGAGCAGCTCCTGCAGCGCTGGGGCGGAGGGGTGGAGATCCACACCTGGTCCCTCCTGCCGCACGGTTCAGGACTGGGTACCAGTAGTATCTTGGCGGGAGCGGTGCTGGCAGCTGTCTATAGATGCACGGGGCGAACCTACGACACAGACTCTCTCATTCACGCTGTTCTCCACCTGGAGCAGATGCTGACCACTGGTGGTGGTTGGCAGGACCAGGTCGGAGGCTTGGTGGGGGGAGTAAAGGTGGCGCGCTCCAAAGCCTGTCTCCCCCTCCGGGTGGAAGTGgaacgtctccctctctccgacGACTTTCTGCTCTCACTGCAACAGCACCTCCTGCTGGTCTACACCGGCAAGACTCGGCTTGCACGAAACTTGCTGCAGGACACGGTGCGGCGCTGGTACAGCCGTGTGCCCTCCATCGTGGAGAACGCCGGGCAGCTAGTGGACAACGCAGAAGAATGTGCCCGCGCCTGTACagaaggCTCTCTCCCCAGGCTGGGGGCTTGTCTGGAGCGTTACTGGGGCCAGAAGAAAGTGATGGCTCCGGGGTGTGAGCCGGCAGCTGTGCGGACCATGATGGATGCCCTGCGCCCGCTGGCCCTGGGCCAGACTCTGGCTGGGGCGGGCGGAGGGGGCTTCCTCTACCTGCTGACCCGCCAGCCACAGCAGGGGGAGGCAGTGCGTCAGGTCCTCAACAACACACAAGGCCTCCGAGACTTCAGTGTCCATCCAGTTGAGCTGGACATGGAAGGCATCTCACTGCTGAAGTCTTcttgagacagacagatggacgtcTGGACCCTAAGCCATTTTTATACACATTTCTAACTTGTATGATCTATTGGGGGACGGTTAGTGTTAGGACATATCacaagaggttggtggcaccataattgtggaggacgggctcgtgctaatggctggagcagaatgaaTGGAATGATATTAAatacatcagacacatggtttccaggtgcttgatgccattccatttgctcccttccagccattattataagccgctcccctcagcagcctccactgggacATGTACACCTTTCAAACTGAGACATTATTCTGCCAACTTCATGCCGACTTCTCTCTATATAAGAAAGCCCGCGAGACAAAGCCCATATGTTTATTTccgccaaccgacctagtcatgattatGGTAAAGTTCTGCCTACGGCTTAGAATGAAATGTAGCCATAAAAACCTGAGGCGGCATTGGCACGCACTCCGCTCTTAAGCTCTTGATGGTTGCTAGACAGCGGCCGTTACTACTATCATCCTGGCAGTTAGAAACTTTGCGAGGCATGTCACTTCACCCATCTCTTCGCATAGCCCACCACATGCAATTTCCTTAACCACAACTGTGGAAACATATCACTGAATGAtgaaaatattggaataaagtaggctaatgcaattgaagGCATCAAATTATTGTTTACTTAAACTCGcaaagtcatccaattgttataataggcctacatttgatttgagtgctGCTTATGATCGTCTTGTCAAATTGGCTCATTTATTAGCACTGATCACACGCAGTAGGAACATGAGACTCCAATGCTTTTGAAAATATAGATTGCTATTATTTTCTATCGGTGTCGTGATGAAGATACTATCAATGTAATATCCTACACCTGCTCCCTAACAAAGCAGAGTGAGGGTTGGAAAGAGGTGACACgtagatttaaaaataataataatcaggtTTAATTTGGGCTCTGATAAATCTTTTTATGTTGTCATGATGCAAGTTGGGATATTCTTTGTATTTTATTCTATTATTTCATTCTTAGCCTACTATCAAATGTGTGACTGTGTATTTTCTGTTTAATAAACAAATATTCATGTGCATGCTACAACCATAGAGGCTGCACAGACCAGTAACATAATTCAACTCAAAA

Function

GO: NA

KEGG:

id description
K05305 FUK; fucokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174090 lncRNA upstream 75725 48319096 ~ 48319258 (+) True G152045
TU174088 lncRNA upstream 77424 48317324 ~ 48317559 (+) True G152043
TU174084 lncRNA upstream 81114 48313661 ~ 48313869 (+) True G152039
TU174073 lncRNA upstream 88158 48306584 ~ 48306825 (+) True G152028
TU173979 lncRNA upstream 153465 48241226 ~ 48241518 (+) True G151942
TU174140 lncRNA downstream 1356 48449143 ~ 48449723 (+) True G152095
TU174188 lncRNA downstream 66012 48513799 ~ 48515392 (+) True G152138
TU174189 lncRNA downstream 68724 48516511 ~ 48516959 (+) True G152139
TU174190 lncRNA downstream 70525 48518312 ~ 48518642 (+) True G152140
TU174192 lncRNA downstream 73322 48521109 ~ 48521432 (+) True G152142
XM_036949781.1 mRNA upstream 261009 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA upstream 261009 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA upstream 261009 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA upstream 261009 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA upstream 261009 48027464 ~ 48133974 (+) False osbpl5
XM_021564236.2 mRNA downstream 33741 48481528 ~ 48501880 (+) True prr5l
XM_021564280.2 mRNA downstream 288732 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564368.2 mRNA downstream 1301326 49749113 ~ 49767125 (+) True LOC110490948
XM_036949980.1 mRNA downstream 1620422 50068209 ~ 50093310 (+) True LOC110491010
XM_021564376.2 mRNA downstream 1650600 50098387 ~ 50100624 (+) False LOC110491026
TU172952 other upstream 847404 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 1409757 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2902604 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2922354 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 3523483 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 108995 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 1650629 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 2717628 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 2874009 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 2964479 51412266 ~ 51417118 (+) True rl28

Expression Profile