RNA id: XM_021564280.2


Basic Information

Item Value
RNA id XM_021564280.2
length 1452
RNA type mRNA
GC content 0.44
exon number 3
gene id cdkn1cb
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48736519 ~ 48738551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGACTTTAAATACGGTGTGGCGCTCTGCTCGGGTACATTTAAACAGAACCGTGTGGCACAACTCGACAGAAACGAAAATAATTTGCTACACTCTAAATCCAGGCATTTATCTATCAAgcattttgttaattttttttgtGTGGATTTTTGGGTTGGACTTTGGTAAGACAATGTCCAACGTCCAGCTAACAAGCAGCGCCCTGGAGAGGTTGGCCGCACGGAGGACCTTTCCTCTCCACGCACGCACAGGCGTCTGCCGTAACCTTTTTGGACCGGTGGATCACGACGAACTGAACCGGGAGATGAAATCCAAGATGTGGGAGATTTCTGAGAGGGACCAGCGGAGATGGAACTTTAATTTCGACGCCGACGTGCCACTGTCTGGGGACTACGAGTGGGAGGAAACCCCGGTAGATACGACTCCAGTCTTCTACCAGGACTCTGTACAGGTCGGGAGGAACAGGATTGTAACACCAGTCAATCTGAAGCAATGCGTGGACTTTATCCCACTGGATGTATCGCCTCTTTGCGAGGACCGTTTGACCAACTCTGAAAGTAGCACTCCCTGTCCCACCGAAGTCAACCAGGAGAACTGGGCAATGAAGCAGAACTCGGGGAAGCCTACCCGCAAACCAGCCCCGTGCGTTCGAAGCAAAAGGACGGCTACTACTGATACAACCACCACGGCACATATTACAGACTTCTACGTGAAACGTAAAAGGACGACGACCGAGACGAAGCTGAATGAAAGCACTTGCCAGCATCCTTCGTCTCCCATTCCTGCAGAACAAACTCCACGCAAGAGAATTCGTTGAAGGCGTTAGCCCTATTCTTGTGGTTATCGTTTCTCCTACCGTCTGATTTGAAGGAGACAGAAAACAAGGGATGGAGAACCCGCCTGCTCGACTGTCCATCGGCTTGGTGCGTCTCCGAGTGGACCTATATGGAACGTAGCCTACAGTCCGTGGACTCTCAGGATTGAACGGTCGGGACAGAGGATTCGCCTAAGGACTCAGACAAAATGTAGCATTCATGGTTGCTTTGCATACAGCCACTTGACAGTGTTAATAAATGTTTAACAACTGTGCAATCCTAAATTACTTTAAATTGTCTACACTGGCCAAAAGTGTACAGCTTTATAAAGACATTATAAATGTTTATTTCTGTTAAATATTTCTGGGTTGTGTAAATAGGCAATTTTTTAAGACTATTCTAACTTATAATTTATTTGTTTCTTTAGGCCTACATTTGCAAATGCCGTTTTGATTTAGTCAAAgggcacattttttattttatttacaaagTTTTATTGTGATGTTTTGCAATCATGTAGCTTTTTATAGTGCACTTGAAACTTAGATTTCATCGTGTTTCTGAGCCGTTTTCTATATCATTGTCCTTATTTTCTGTTTTGCAAAATATGCAAATAAAATATTGTCATTGAAATTT

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042326 negative regulation of phosphorylation biological_process

KEGG:

id description
K09993 CDKN1C, P57, KIP2; cyclin-dependent kinase inhibitor 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174275 lncRNA upstream 31330 48699197 ~ 48705189 (+) True G152213
TU174244 lncRNA upstream 75597 48659218 ~ 48660922 (+) True G152183
TU174242 lncRNA upstream 78590 48656193 ~ 48657929 (+) True G152182
TU174298 lncRNA upstream 80888 48655291 ~ 48655631 (+) True G152235
TU174268 lncRNA upstream 120390 48615810 ~ 48616129 (+) True G152207
TU174682 lncRNA downstream 51659 48790210 ~ 48790509 (+) True G152589
TU174683 lncRNA downstream 52009 48790560 ~ 48791014 (+) True G152590
TU174684 lncRNA downstream 52925 48791476 ~ 48791675 (+) True G152591
TU174704 lncRNA downstream 64429 48802980 ~ 48803181 (+) True G152611
TU174710 lncRNA downstream 67599 48806150 ~ 48806424 (+) True G152617
XM_021564236.2 mRNA upstream 234639 48481528 ~ 48501880 (+) True prr5l
XM_021564195.2 mRNA upstream 288732 48394983 ~ 48447787 (+) True fcsk
XR_005036978.1 mRNA upstream 319461 48412707 ~ 48417058 (+) True LOC118940424
XM_036949788.1 mRNA upstream 602545 48027462 ~ 48133974 (+) False osbpl5
XM_021564368.2 mRNA downstream 1010562 49749113 ~ 49767125 (+) True LOC110490948
XM_036949980.1 mRNA downstream 1329658 50068209 ~ 50093310 (+) True LOC110491010
XM_021564376.2 mRNA downstream 1359836 50098387 ~ 50100624 (+) False LOC110491026
XM_021564382.2 mRNA downstream 1411910 50150461 ~ 50159171 (+) True LOC110491039
XM_021564399.2 mRNA downstream 1442749 50181300 ~ 50198685 (+) False LOC110491040
TU174225 other upstream 178833 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 1188940 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 1751293 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 3244140 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 3263890 45472082 ~ 45472629 (+) False G148191
TU176287 other downstream 1359865 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 2426864 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 2583245 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 2673715 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 2682296 51420847 ~ 51421122 (+) True G155541

Expression Profile