RNA id: TU176006


Basic Information

Item Value
RNA id TU176006
length 2342
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC110490968
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49801952 ~ 49837047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGATGGAAGattcctctctcccctactcaTCACAGAATTGTTTTTATCAAGCCTTCGTCATTCCGAATATTACTCTGTTTGTTGCGATAAAGGTGTTTGCCGTTATAGGTCCCTATCCTAACTTCAGTTGTCTAACTGAGGGAGTTTGTCATGGATATTTTTGCGATAAAGGAGACCTTTATTTTTGCTCGGCTCTTCATCAACTCCATTGAACTTTTACATTCAGCTATCATCTGCCGTTTGGGATAACGTTGAGGAATTTAAAcGACCATTGGACGTGTGGCTGGGGGCATCCAGTTTTTTGGGGcgTTGCTGATTGGGTCGGGGTGTGCGCTCTACCCTCTAGGTTGGGACAGTGACGAAGTTCGACAGACCTGCAGCAATAGATCCAACCAGTTTGAGCTTGGTTCTTGTGAGATTGGCTGGGCGTTCTACTGTACCGGAGCAGGGGCATCAGCAGCCATGATGTTATGCACCTGGATGGCCTGCTTCGCTGGGAAGAGACGGAAGCAGTACCCGTACTGATGTCATCTAGGCGGGACAGCCACAGAGACCATGATGACCACCTCCCCCAACACCCGTCATCACTGGCAATTGAAGAGACTCAGAGCAAAGGATAATATCAGGGGGACAGTGTCTATGGGCGCATTCGACATTGCAGCTGACTTTAAAGGCGAGTCgagactgatctacaaatcaccatcataaataactactcaatattatttgtagatcagtcagtcagtcacaatttacccatggAACATCACAATTTTGATGCTCTTGAACACGGCCTGTAATGCCATAGGCTAGTTATGCACTCTGTCATCATAATTGAAGCAGAGCGGACTACCTTCTGGTGCATTTGGTACTGAGGCAGaaaataatataacacaatacattcgCAATTACACTTCATTGTCCAACAGAGCATTTCAAAAGAGTGTAGTCTACATACTTTGTATTCATTGACAGCAAGAACAACATCTGTTTCTATCTCTATTTTCCTTGGGTTGTATGGTTGcttctctattcctcctcctatTCTATTCTGTCATGTCCCTGTACTATAACTTTGTGGTAACTGAAGTAGTGGCACAACCAGTGGTAAAGATATATTAAATTACTATACTTTTGATATTACTTTTATTGTATTTTACATCCTGTATTTAATAAATATGTTATGTACCCCCACATTGGCCTAGTATTGCCTTAAAGACCCGTAAAAAGCTCATTCTCATGGTGTCGATATGAGTCCAAAACATTTATTGTAGCGTCAAAATGTACTACCAAGTGTAAAttggataattttggtcataaagtcagtcttgtCCAAAAGGGAGATTTGCAAGATTATAGGAAAGCTTGTATGTCACATAATGAAGGGTACCATAAAAGTTTTCCTTGGGTTGGGTTTATTTAAATCctgcccacagctggcagcaccCAAGTAATCATCAATTTGGAGCGCAGCTGGACGCAACCTGATgcaatgttcaatttggtttgacattcAATATCCCTATGGGGCTGGTTAGGGACCATCAGTAAATGACACAATGTACCTGCGACAATATTTTAAAAGGTCAAAAGCTCCAAATTTCAATTACTTAAATCTCAAACCAACTATAAATTGGAGAAAttcatatacaaatattgaaagctAAAAGATGTGCAACATGACAATATTGAACCATACGTTGTGTCATTTATTTGTCCCTAACTAGAGCCAGAGATAGGCTATCCAATGTCAAACAATGTCAAACAAACTTTGTCACTGTGTTACACCAGTGAGCTGTAGCTAATTGGTGAAATAAGTTTGCTTGCACTAGCTAGCCTAGACTTCAAGACTCGAGACCTGGTTTGACTGTTTCAAGTTATCTAGAAGGTTGAGTGACTGTGTACTGTTGTGGCAGAGTGATTATACACACATGAGACACCCACGTTAAACCACCACTCCAAAACAACTCTTGTTTGGCTTCAGTCATGACTGCTGCATTTCTTAATGTCCAAGCCGAATAACGAGGCCAAACGTTCAGCACCCCTTTTAAATATATAAACCCTTACTGGTATCTTGCAATCATTTTGAACTGTTATCATGTCAGTAACTATTTACAGTATAGCTATAAAACAGGGAATGTTGAAGTCCCTGAATGTATGTCTGacatatttttgtgtgtgtatgatgtacagtatattgtataaCATTACATTTGAATGAAACACAATAGATATGACCCTGTAAATAAATTGTTACTTTAAAGTCTTAATAAATATTCACAAACCTTTCAGAAGTGGAGAAGTTCTAAAGCTGTAGCTCCACTTAATCTGAATTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176042 lncRNA downstream 12419 49789395 ~ 49789617 (-) True G153864
TU176041 lncRNA downstream 14117 49787651 ~ 49787919 (-) True G153863
TU176039 lncRNA downstream 16742 49784928 ~ 49785294 (-) True G153861
TU176026 lncRNA downstream 30254 49771542 ~ 49771782 (-) True G153848
TU176019 lncRNA downstream 33453 49766525 ~ 49768583 (-) True G153841
TU176066 lncRNA upstream 1743 49838761 ~ 49839598 (-) True G153886
TU176074 lncRNA upstream 15904 49852922 ~ 49853181 (-) True G153894
TU176077 lncRNA upstream 21433 49858451 ~ 49858737 (-) True G153897
TU176083 lncRNA upstream 26953 49863971 ~ 49864177 (-) True G153903
TU176089 lncRNA upstream 36706 49873724 ~ 49873959 (-) True G153909
XM_036933957.1 mRNA downstream 62790 49738842 ~ 49739246 (-) True LOC118936760
XM_021564353.2 mRNA downstream 326665 49451688 ~ 49475371 (-) False hmg20a
XM_036949947.1 mRNA downstream 326665 49451688 ~ 49475371 (-) False hmg20a
XM_021564359.2 mRNA downstream 326665 49453802 ~ 49475371 (-) True hmg20a
XM_036949921.1 mRNA downstream 374753 49166669 ~ 49427283 (-) False peak1
XM_021564372.2 mRNA upstream 125878 49962896 ~ 50037892 (-) False LOC110490984
XM_021564373.2 mRNA upstream 125878 49962896 ~ 50037892 (-) True LOC110490984
XM_021564378.2 mRNA upstream 287543 50124561 ~ 50127403 (-) True plscr3a
XR_005034525.1 mRNA upstream 292497 50129515 ~ 50130983 (-) False LOC118937274
XM_021564431.2 mRNA upstream 435200 50272218 ~ 50287180 (-) False LOC110491057
TU174069 other downstream 1498373 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 1575092 48226299 ~ 48226944 (-) True G151920
TU173905 other downstream 1613758 48187958 ~ 48188278 (-) True G151875
TU173467 other downstream 1950688 47850785 ~ 47851348 (-) True G151474
TU172611 other downstream 2596603 47194893 ~ 47205433 (-) False G150675
TU176510 other upstream 264412 50101430 ~ 50107447 (-) False G154300
TU176505 other upstream 264535 50101553 ~ 50106737 (-) True G154300
TU176559 other upstream 319668 50156686 ~ 50157825 (-) True G154338
TU177312 other upstream 578725 50415743 ~ 50452147 (-) True G155003
TU177396 other upstream 742780 50579798 ~ 50581349 (-) True G155072

Expression Profile