RNA id: XM_021564372.2


Basic Information

Item Value
RNA id XM_021564372.2
length 3461
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110490984
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49962896 ~ 50037892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTATACACATACCATTGGTGGCCGCTGACTGTCACTCAAGGTCTTAGTGGGTGTTACCAGTTGACTTCGTAGGATTTACGAACGTAATAGATCTGTGATTGACAGTAGACAACGACAGTCAGGCGCGATAGACACTACGAACAGAACACAGATACACTTTGCCTGTAACCGCGCAGTTTTAGATAAAGGACATCCAGAGTgagttgtatttttttattcCATCATCGCAAACAGACGGTTTTCAACTAGTGCCCTCTATCAGAGTTCATGAAGAAGTGACGACGCTTTTTACACTTTTACATTTGGTGCCTGGACTGGACGATTCATTGAGTGTCTTTATGTGACAGTTGTGCTATTTGTCCGTTTACTTTAGAGATGGCAGATTTACCGCTGCCGCAACAGTTGGTTGATATAGACCCGGATTTCGAGCCACTCTCGAGGCCCCGGTCATGCACCTGGCCTCTGCCTCGACCAGAGTTCATCGAACCCGCCTGCTCAAACACATCTTCACCGGCGCCTTCAGTCAAACAGGAGCCTGTCGAATACATCAGTAACCTCAGTTTTTTAGAAGAGTCAGAGGACTACCCGGAGGATCAGAAACCGCTTGTTTTGTGCAATGATTTTCAGTGCCAGGGGAACTGCATACACCCGCAGCAGGAGAAACAACATCCACAGCAGTTACAGCATCATCAGCAGCACCCGTGTCCTCAGCTGCCGCACCAGCAACAGGTGCCCCCGGTCTCATCCCCCAACGGGTCGAATTCGGTGGCCGCCGCCGCAGCCGTGCAGAGGAAAAGCAGCTCGTCGCGTCGGAACGCGTGGGGGAATATGTCCTACGCGGACCTCATCACCAAGGCGATAGAGAGCTCACTGGAGAAGCGACTCACCTTGTCTCAGATCTATGACTGGATGGTGAAGAGCGTGCCATATTTTAAGGATAAAGGAGACAGTAATAGCTCAGCAGGTTGGAAGAATTCCATCCGCCACAACCTGTCCCTCCACAGTCGTTTTGTTCGTGTGCAGAACGAGGGGACAGGGAAGAGCTCGTGGTGGATGCTGAACCCCGAGGGAGGGAAGAGCGGGAAGTCCCCCCGACGTAGAGCTGCCTCCATGGACAACAACAGCAAGTTCACCAAGAGCAGAGGACGGGCTGCCAAGAAGAAGGTGGCTCTCCAGGACGGGGTAGTTGGGGGTGCAGACAGCCCGGGAGGCTCCCAGTACTCCAAGTGGCTCGGCAGCCCCAACTCCCACAGCCACAGCAATGATGACTTCGAGGCCTGGACTACCTTCCGGACGCGTGCCTCCTCCGACGCCTCCACCCTCTCTGGCCGTCGCTCTCCCTTCCTGGAACAGGACATCGACCTATCAGAGGCCGATGTCCATATGGGCTACCCTGTAGGGATGGGGCCTAAGATTACCTCCATGGCCACCCTGCCCAGCCTATCAGAAGTGGGCCTGGCCGGCTCCATGGGGGGTCATCATCATGGTCACCACGGAACAGAGAATGTCATGGAGAGTCTCCTTGACAACCTCAACCTGCTGTCCCCCAAGAATCAAGGCCAGCTGGTGGTATGTGGTGGGCCTGGGTCTGGGCCCGACTCCTCAcggtcctccccctcctccatgcttcagaaCAGCCCCTATAGCTCCCCCTCCATGAACCCCCAACCCCAACAGCAGGACTACAGGAAGTGCCTCTATGGCCAGGCTGGGCCAGGCATGAACAGCCcacatctctcccccatccccatgcAGACGCTGCCAGAGAGCAAGCCTCCAGGGTCCTTTGCACACTTCCGGAGCCATTACAACTGCCCTGCTGGGCTCCTTAAGGAGCTGCTGACCTCTGAAGTAGCTGACCCCCGTGGTGGGGAGGCCATGCCCACCATGGAGACAGTAGTGTCCCAGTCAGGGAgagggcgaggaggaggagggcggaTGCTGCCCAACTACAGCAGCCAGGGGCAGGTGGGACAAGTGGGGGGGCACGGAGGGGTGAAGATGATGAGTCCCGCTCCTCAGCAACACACACGACACCCTCAGTCCCACACTCAAAATCCACACCCTCACCCACATCTGCAGCCTTTCCACAGCCAGGGCCAGTGCCCTCCCCCATCTGGGCCCTCCATGAACGGCTGTGGCCTGATTCCCTTGACCAGCCTCAACCACGCTGGGGGCCCTGCCCGTCTAGCCAGCCTCAGGACACACATCCACCAGCTACAGCAGCGGCCCCACAGTGGTGGTGGTCACCCAGTCTCAGGCCATCACAACCACAGTCCCCACCACAATGGAGCTCCCCCACCCAGCTACAGCAGCAGTGCTAATGGTTATGGGAGACCAGGTCCAGGTCCCAGCTCTGCTCATCCCCagttccaccaccaccaccaccatcatcatcatcatcaggagAGGCTGCCTAGTGATCTAGACGACATGTCCATCGAGAGGTTTGAGTGTGACATGGAGTCTGTTCTTCATGACACGCTGATGGACGGAGACTCGTTGGACTTCAACTTTGACCCCATGGTGACCACCCAGGGGTTTAGTCAGGGGGTTGGGGTGAAGACCACCACACACAGCTGGGTGTCtggctaagacacacacacacctctccgaCTCAGAGCAGACAGATTTTTCAACATTCTCCACTGGCCTTCATGAAGAGAATGGAAGAGTCTAAAGAAACCATTGCCCCTCTCCAGAGGACTATCATCAGCCCGTCCCAATTCTGTCACTATCCATTGCAGATATGTAAGGTGGAAGAAATCAGGTGGAAGCTCCATCACTAAACTGTGTTCACATATCTAGACCCTTTAGATTTGCAAAGATCAAGGTGTACGGAGGGACTGCGCTGGCTGAGACTGTGAGGGAAAGGCTGGTCTGAAGTTGGCCTTGTAAATATAGCAGCACAATACCATTCACTTCAACAGTACTTGgaagaagctggagactcttaaagcaatgttttattgtgaaaaatgttttgtgtttagtatgttattttagttttttggatCTCACATTATGTTTTTACGAGTGTGTATTTATCTTTTTTAGTTTGGCTTTAGCTCTTCAAAAACAACTGGAATGGAGTCGGTTCTGTTTCACATTCAAGTGGGGTCTGTCCCACCCTTCAAGGTGCTTCTCTATAAGGTTGTCAAAAAAAGTTTGACATATTATGTCTGAGTAAGATATTATCGATGTAAATATGCTACTATACttcaaacatacagtgcattcgggaaagtattcagaccgctcaactttttcctatttttttttacgttacagcctctttctaaaattgattcaactGTTTTTTGCCCCCAGATTTTTGCCCccgcatcaatctacacacaatacacagtaattacaaagcaaaatctttttttaaatttttttcttttacatttctgtaattatttaaaataaaaaaaactgaaatgtcacatttacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176169 lncRNA downstream 23149 49939297 ~ 49939747 (-) True G153988
TU176138 lncRNA downstream 50904 49911571 ~ 49911992 (-) True G153958
TU176137 lncRNA downstream 51380 49911230 ~ 49911516 (-) True G153957
TU176129 lncRNA downstream 55739 49906831 ~ 49907157 (-) True G153949
TU176116 lncRNA downstream 64683 49897967 ~ 49898213 (-) True G153936
TU176472 lncRNA upstream 53284 50091176 ~ 50093305 (-) True G154271
TU176523 lncRNA upstream 78157 50116049 ~ 50116251 (-) True G154307
TU176526 lncRNA upstream 81428 50119320 ~ 50119588 (-) True G154310
TU176529 lncRNA upstream 89831 50127723 ~ 50127951 (-) True G154313
TU176530 lncRNA upstream 91729 50129621 ~ 50130137 (-) False LOC118937274
XM_021564371.2 mRNA downstream 125849 49802029 ~ 49837047 (-) False LOC110490968
XM_036949960.1 mRNA downstream 125855 49802029 ~ 49837041 (-) False LOC110490968
XM_036949965.1 mRNA downstream 131719 49802029 ~ 49831177 (-) False LOC110490968
XM_036933957.1 mRNA downstream 223650 49738842 ~ 49739246 (-) True LOC118936760
XM_021564353.2 mRNA downstream 487525 49451688 ~ 49475371 (-) False hmg20a
XM_021564378.2 mRNA upstream 86669 50124561 ~ 50127403 (-) True plscr3a
XR_005034525.1 mRNA upstream 91623 50129515 ~ 50130983 (-) False LOC118937274
XM_021564431.2 mRNA upstream 234326 50272218 ~ 50287180 (-) False LOC110491057
XM_036950023.1 mRNA upstream 234326 50272218 ~ 50287727 (-) True LOC110491057
XM_036950101.1 mRNA upstream 436740 50474632 ~ 50535936 (-) False LOC110491068
TU174069 other downstream 1659233 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 1735952 48226299 ~ 48226944 (-) True G151920
TU173905 other downstream 1774618 48187958 ~ 48188278 (-) True G151875
TU173467 other downstream 2111548 47850785 ~ 47851348 (-) True G151474
TU172611 other downstream 2757463 47194893 ~ 47205433 (-) False G150675
TU176510 other upstream 63538 50101430 ~ 50107447 (-) False G154300
TU176505 other upstream 63661 50101553 ~ 50106737 (-) True G154300
TU176559 other upstream 118794 50156686 ~ 50157825 (-) True G154338
TU177312 other upstream 377851 50415743 ~ 50452147 (-) True G155003
TU177396 other upstream 541906 50579798 ~ 50581349 (-) True G155072

Expression Profile