RNA id: XM_036949980.1


Basic Information

Item Value
RNA id XM_036949980.1
length 2286
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110491010
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50068209 ~ 50093310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTAGATAGCCAATAACATGTCACAATGGGGTTAACAATATGACTCTAGCGTGAATGATAGTCCCCTTCAGCAATCACAACCTGAGCTTCCCAGACCACGTTGTGGTATATAACACTTTTTCGCGGCGTATTCGCCCTTTGTGATAATGTCGGCAGATTATGAAGAGAGAGACCTCTCCAACAGAGACAATGGCCCTGAGGGCATGGAGCCAGATGGCATCATTGAGAGTAACTGGAATGAGATTGTGGACAGCTTTGATGAGATGGCCCTGCGTGAGACTCTCCTGAGAGGAATCTATGCCTATGGTTTTGAGAAACCATCTGCCATTCAGCAGCGGGCCATCCTCCCTTGTATCAAGGGTTATGATGTCATTGCACAGGCCCAGTCCGGCACAGGGAAGACCGCCACGTTCGCCATCTCCATCCTCCAGCAGATTGATATCGAGCTGAAGGGCACCCAGGCCCTGGTCCTCGCCCCCACCCGAGAGCTGGCTCAGCAGATCCAGAAGGTGATCCTGGCCCTCGGCGACTACATGGGAGCCTCGTGCCATGCCTGTATTGGCGGAACCAACGTCCGCAACGAGGTGACAAAGCTCCAGGCTGAGGCTCCCAACATAGTGGTTGGAACACCAGGCCGCGTGTTCGACATGTTGAACCGCAAGTTCCTCTCTGCTAAGTACATCAAGATGTTTGTCCTTGACGAAGCTGATGAAATGTTGAGCCGGGGTTTCAAAGACCAGATCTACGAGATTTTCCAGAAGCTTGGCACTAGCACACAGGTGGTTCTCCTGTCTGCCACTATGCCTCAGGATGTGCTGGAGGTCACCAAGAAGTTCATGCGTGAACCCATCCGTATCTTGGTGAAGAAGGAAGAGCTCACCCTGGAGGGTATCCGCCAGTTCTACATCAACGTGGAGAAAGAGGAGTGGAAGCTGGACACCTTGTGTGATCTGTATGAGACCCTGACCATCACCCAAGCTGTGATCTTCATCAACACCCGCCGAAAGGTGGACTGGCTGACTGAGAAGATGCACGCCAGGGACTTCACAGTCTCTGCCCTGCACGGTGACATGGACCAGAAGGAGAGGGACCTAATCATGAGGGAGTTCCGCTCTGGCTCCAGCCGTGTCCTCATCACCACAGATCTGCTGGCCCGAGGAATTGATGTCCAACAGGTGTCTCTGGTTATCAACTATGACCTGCCAACCAATCGTGAGAACTACATTCACAGGATCGGGCGAGGAGGCCGTTTCGGCAGGAAGGGTGTTGCCATCAACATGGTGACTGAAGAGGACAAGCGCACACTCCGGGACATTGAGACGTTCTACAACACCACAGTAGAAGAGATGCCCATGAATGTGGCTGACCTGATCTAGACTACCCCTGGCACCCTGCCTGCTGGTGATACCTTAACACTCTACAGACCATCATCAtcccactacccccccccccaattctcTAACATCTCCCGTTTCCTACCTATCACCCACCTAACCAAGCCTCCCACGTATCCCAATTTTGCGCTCTTAAATGGGTTAGGGGAACTCCTGTTTTCCTCCTCTTCCATGCCCTCTGCGGTCCCTCAGCTCAGCCCCACTCATTTGTTTTTCTATGGATCGCCTTGCTTCATAAAAATCAAGAATTGTATTTTACTTGGCTACAGATGAGATTTGCTATGTTTGTATTAGCAGCAGACTTGATATCCTTGTGGTCTACAAGGACCCTTGCGACTCCATTTCAATAGGAAATGGTGACTTCTTGGGGGATGGGGATTGCATCATTCAGTTCCATTCTTTATTTGCATCGAAGTTATATTCAATCACTATCCATTGCTGATATGCAGTAGTTTTTCTGCAGGAGTGTTTTTAAACAGAAACAAGGGATGACATTGTTAATCtgtttgattgttttttttgttccATATGCCCCCTTGGAAGTACCCCCTTGGAAGTATAGCAATTATTTGAATACACTTAGTGGTGTTCCAAACATGTTGGTAGATATTTCTAGTGTGTATAATTGACATTTCACACGGGTTGACATTGAACCCTTGTTCTAAACGTTCATTGACATTTTTGGGGGAGAGCATGACGGTGTACAGAGGGGGGTAttgggagttttttttttttttttgcaaagatATTTGGACTCGACAAACCCTATAGGCAAATCAAAATCCAGTACAAACTATTTATTTTCCACCCCTTTTTTATTCATTAGTTTGGTTTCATTTTACAAATTGGGGGAGGGGGATGACTTCAATAAAGTTACCAAATAAAATCCTG

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176241 lncRNA upstream 31829 50036103 ~ 50036380 (+) True G154059
TU176202 lncRNA upstream 88153 49979761 ~ 49980056 (+) True G154020
TU176200 lncRNA upstream 90621 49977377 ~ 49977588 (+) True G154018
TU176199 lncRNA upstream 91598 49976343 ~ 49976611 (+) True G154017
TU176158 lncRNA upstream 136594 49931389 ~ 49931615 (+) True G153978
TU176293 lncRNA downstream 17639 50110949 ~ 50111262 (+) True G154105
TU176298 lncRNA downstream 24995 50118305 ~ 50118642 (+) True G154110
TU176299 lncRNA downstream 25437 50118747 ~ 50119001 (+) True G154111
TU176307 lncRNA downstream 35549 50128859 ~ 50129073 (+) True G154119
TU176371 lncRNA downstream 144167 50237477 ~ 50244279 (+) True G154180
XM_021564368.2 mRNA upstream 301084 49749113 ~ 49767125 (+) True LOC110490948
XM_021564280.2 mRNA upstream 1329658 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564236.2 mRNA upstream 1566329 48481528 ~ 48501880 (+) True prr5l
XM_021564195.2 mRNA upstream 1620422 48394983 ~ 48447787 (+) True fcsk
XR_005036978.1 mRNA upstream 1651151 48412707 ~ 48417058 (+) True LOC118940424
XM_021564376.2 mRNA downstream 5077 50098387 ~ 50100624 (+) False LOC110491026
XM_021564382.2 mRNA downstream 57151 50150461 ~ 50159171 (+) True LOC110491039
XM_021564399.2 mRNA downstream 87990 50181300 ~ 50198685 (+) False LOC110491040
XM_021564415.2 mRNA downstream 87990 50181300 ~ 50198685 (+) False LOC110491040
XM_021564389.2 mRNA downstream 87991 50181301 ~ 50198685 (+) False LOC110491040
TU174225 other upstream 1510523 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 2520630 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3082983 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 4575830 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 4595580 45472082 ~ 45472629 (+) False G148191
TU176287 other downstream 5106 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 1072105 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 1228486 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 1318956 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 1327537 51420847 ~ 51421122 (+) True G155541

Expression Profile