RNA id: XM_021564378.2


Basic Information

Item Value
RNA id XM_021564378.2
length 1034
RNA type mRNA
GC content 0.46
exon number 7
gene id plscr3a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50124561 ~ 50127403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACACACCTTACACGCCTGAATCACTTCTGATTGCGTCGATTACTTAGCACATACAGAGAACAACACCAACACAGAGAGCAACACCGTCAGAAGCTCTGGCAACAGATAGCAAGGAATTTGTATGCTGCTACTGATCCTACCACGCCATGGAAAATAGCTTTCGATCAACAGGAGTGCCCCCTGGCCTGGAGTACCTAACACAGATCGATCAAATCTTGATCCATCAGAAAATGGAACTGCTGGAGGCCATCACTTCCTTTGAGACTAAAAACCGGTACGTAATCAAGAACAGTTTGGGACAGGAAATCTACACGGCCAAGGAGGATAGTGACTGCTGCACCCGGAACTGCTGCGGTCCCAACCGCATGTTTGAGATGAAGATCAAAGACCACAGTGGCCAGGAGGTCATGCACCTGGTCAAGCCCTTCCGCTGCACCTCCTGCTTCTGGCCCTGCTGCCTGCAAGAGATGGAGGTCCAATCCCCTCCTAGCACCACCATAGGTTATGTGGTTCAGAACTGGCATCCCTTCAAGCCAAAACTGTCCATCCTAGGAGCTGCCAAAGAGACTCTCCTGACGATTGAAGGTCCTTTCTGTGCCTGTAGCTGCTGTGGAGATGTTGATTTTGAGGTGATGGGTAAGGACAGTGACCAGCCCATTGGGAGAATAAGTAAGCAGTGGAGTGGGCTGATAAAGGAGGCCTTCACTGACTCAGACAACTTTGGGATCCAGTTCCCCATGGACCTGGATGTCAAGATGAAGGCTGTGCTGATGGGGGCCTGCATCCTTATTGATTTCATGTTCTTTGAAAGGAGTGGTGACAGTGATCAACGGTGTTCTGTATTTGGATAAGAGATTGAGTTTTTGATCATGTACAAATTACATGATACTATAGTTGATAATGACATGGCTATTGGATGCATATGAATCACATAACATGACATTTAAGACAAAACAAATATGTGTTCTTTATTAATTCAATATATTCATCTGTATTTTGGATGTCTGAATACAATATTCAAACATTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176526 lncRNA downstream 4973 50119320 ~ 50119588 (-) True G154310
TU176523 lncRNA downstream 8310 50116049 ~ 50116251 (-) True G154307
TU176472 lncRNA downstream 31256 50091176 ~ 50093305 (-) True G154271
TU176443 lncRNA downstream 139552 49984745 ~ 49985009 (-) True G154249
TU176435 lncRNA downstream 146743 49977608 ~ 49977818 (-) True G154241
TU176529 lncRNA upstream 320 50127723 ~ 50127951 (-) True G154313
TU176530 lncRNA upstream 2218 50129621 ~ 50130137 (-) False LOC118937274
TU176531 lncRNA upstream 3396 50130799 ~ 50131269 (-) True LOC118937274
TU176532 lncRNA upstream 4112 50131515 ~ 50131798 (-) True G154316
TU176583 lncRNA upstream 51400 50178803 ~ 50196982 (-) True G154355
XM_021564372.2 mRNA downstream 86669 49962896 ~ 50037892 (-) False LOC110490984
XM_021564373.2 mRNA downstream 86669 49962896 ~ 50037892 (-) True LOC110490984
XM_021564371.2 mRNA downstream 287514 49802029 ~ 49837047 (-) False LOC110490968
XM_036949960.1 mRNA downstream 287520 49802029 ~ 49837041 (-) False LOC110490968
XM_036949965.1 mRNA downstream 293384 49802029 ~ 49831177 (-) False LOC110490968
XR_005034525.1 mRNA upstream 2112 50129515 ~ 50130983 (-) False LOC118937274
XM_021564431.2 mRNA upstream 144815 50272218 ~ 50287180 (-) False LOC110491057
XM_036950023.1 mRNA upstream 144815 50272218 ~ 50287727 (-) True LOC110491057
XM_036950101.1 mRNA upstream 347229 50474632 ~ 50535936 (-) False LOC110491068
XM_036950090.1 mRNA upstream 347229 50474632 ~ 50535937 (-) False LOC110491068
TU176510 other downstream 17114 50101430 ~ 50107447 (-) False G154300
TU176505 other downstream 17824 50101553 ~ 50106737 (-) True G154300
TU174069 other downstream 1820898 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 1897617 48226299 ~ 48226944 (-) True G151920
TU173905 other downstream 1936283 48187958 ~ 48188278 (-) True G151875
TU176559 other upstream 29283 50156686 ~ 50157825 (-) True G154338
TU177312 other upstream 288340 50415743 ~ 50452147 (-) True G155003
TU177396 other upstream 452395 50579798 ~ 50581349 (-) True G155072
TU177629 other upstream 843673 50971076 ~ 50971935 (-) True G155281
TU177680 other upstream 912467 51039870 ~ 51049880 (-) False LOC110491241

Expression Profile