RNA id: XM_021564382.2


Basic Information

Item Value
RNA id XM_021564382.2
length 2158
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110491039
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50150461 ~ 50159171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCCGGTCGTAACTGTTGCTGCATTCATTTTCTGGTCGGAACTAGGGAACTCTGAAATGTCCGACTTGCAATAGTTTATAGTTATACACGTGCCGCATTCACTCAGTTAGCAAGTTGGCATTTTCTAGTTTCCTAGTTCTGAATAGCACGTAAACGTGGCATGTATACCGCCTAGTTGAAACCACGTAGTTATGGCGGCGTGCTGTCCAGTTCCGGATTTGTTTGAAGTATGTGTTGACGGCGTCTAGTTGGGACTTTGGCATATTTCGTCAACCAACTTCAATTTGTCAACCTAACTAAGTAAAGTTAGAATTGTATCGTTGGTATTTTATAAGGACGTTTCCTTTTATACACTTTTCTAGCTTACAAGGGCTAGCTAAACTAGCGACCGAGAACCAGCGAATGCTAGTTGCTACTCGCCTGGATTCATCGCTTTCATTTTTAATGACGGTTTAGCTACTTTTTAAAAGGGGTTTTTCTTCATTCATTTTCAATCGAGTGTGGCGAAAGTAGGATTTGAACTGAGCACACGATTGCTATTGGCCGGTGTCTACTTGACCTGCAGCTGCAGGTTCTGGAGGGAAGAGGCTGGGGACCCGACTCAACCGGAGTCTCTCGGGCTGTACCGCTATTTGTGCCGAGAATACTGTTTGAGTGACTGTCGAAATGCTGAAGACCCGTCAGTGTTTACTTGGCATTCGCACTTTCCTCGGAGTGACGTCTAGAATATGGGGGTTTATTCTGTACATACTCAGGAAACATTTAAGGACGGTAATCCAGTACCAAACAGTGCGTTATGACACATTACCTCTGTCGCCTGTGTTCATAAACCGACTCAATGCCGTTAAGAGGAAGATTCTGGTGCTGGACCTTGACGAGACCCTAATTCACTCCCACCATGACGGGGTGATGAGACCCACAGTGAGACCAGGCACTCCCCCAGACTTCATTCTAAAGGTGGTAATCGACAAACATCCTGTCAGGTTTTTTGTACATAAAAGACCGCACGTGGACTTCTTCTTAGAAGTGGTAAGTCAGTGGTATGAGCTGGTGGTTTTCACGGCCAGTATGGAAATCTATGGCTCAGCTGTGTCTGACAAGCTAGACAAGGACAGGGACATCCTGAAACGAAGATACTACAGACAGCACTGTACATTGGATCTGGGTAGTTATATTAAAGATCTTTCTGTGGTGCACAACGATCTATCTAGTGTAGTCATCCTGGACAACTCGCCTGGGGCCTACCGCAGCCACCCTGACAATGCAATACCCATCAAATCGTGGTTCAGCGACCCAAGCGACACAGCTCTTCTTAACCTGCTACCCATGCTAGACGCCCTGAGGTTCACCTCAGATGTCCGGTCCGTCCTCAGTCGAAACCTCCATCAGCATCGGCTATGGTGATTCGCCATCGGCGCCAGCCTCAGCAGCTCCACTTCCTCTTTTTAGAATGCCTTctctgctgcccccccccccccccccccccccccccccccccccccctctgctcaCATCTCCCccgctctgtggtgtgtgtgagtcttTTTAAGAAGGGTGAGGACAAAGACTGGGGGCCACAAATACCGAGGAGGAAGCTATGTGTAAGGAAGGAAAACAAAGTGGAGAGGGCAaactttttatttgtatttttcctgAATGGAAACTCTTGCCTTAAAGTCCTTGGATTCTGGGAGTgcatgttgtgtgtttgtgtaaacaTGTGAGAGTATGCTTGCATTAgtcacttttttgttgttgatgaaaTATGAAATCTTTTAAACTATTGACTATGGAAATACTGATTATGAGACGATGAAGAAACCAGTCCTTATTTCAGAAAAATGACTTGAATGTTGTGTAGTTAATACAGATGTAAGATTTTGACCCTTCTTCTCCATCCACAGAGCAAAGTTAAGTTTTATTTTCATCAATCTTTCTATTCATGAGCATGTTTTCTTCCTTGGACTTTTTCAAGCCTGATTTACTCCCGTTCTCTTTAAACCATGTACCATGTACACATTATCCCATTTCCTTCAATGTAACTCCAACATCCTGGCCCATTGAAAAATGTAAGCTAAGGCCTTTGGTGGGTTTCTGTCGGTCAGACATCAAATCGATCAGTGTCCAATAAATTGCTTGGCATCATACTATTTTAC

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K17617 CTDNEP1, DULLARD, NEM1; CTD nuclear envelope phosphatase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176307 lncRNA upstream 21388 50128859 ~ 50129073 (+) True G154119
TU176299 lncRNA upstream 31460 50118747 ~ 50119001 (+) True G154111
TU176298 lncRNA upstream 31819 50118305 ~ 50118642 (+) True G154110
TU176293 lncRNA upstream 39199 50110949 ~ 50111262 (+) True G154105
TU176241 lncRNA upstream 114081 50036103 ~ 50036380 (+) True G154059
TU176371 lncRNA downstream 78306 50237477 ~ 50244279 (+) True G154180
TU176391 lncRNA downstream 100223 50259394 ~ 50259673 (+) True G154199
TU176396 lncRNA downstream 106764 50265935 ~ 50266159 (+) True G154204
TU176672 lncRNA downstream 145702 50304873 ~ 50397242 (+) True G154431
TU176730 lncRNA downstream 221165 50380336 ~ 50447003 (+) True G154487
XM_021564376.2 mRNA upstream 49837 50098387 ~ 50100624 (+) False LOC110491026
XM_036949980.1 mRNA upstream 57151 50068209 ~ 50093310 (+) True LOC110491010
XM_021564368.2 mRNA upstream 383336 49749113 ~ 49767125 (+) True LOC110490948
XM_021564280.2 mRNA upstream 1411910 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564236.2 mRNA upstream 1648581 48481528 ~ 48501880 (+) True prr5l
XM_021564399.2 mRNA downstream 22129 50181300 ~ 50198685 (+) False LOC110491040
XM_021564415.2 mRNA downstream 22129 50181300 ~ 50198685 (+) False LOC110491040
XM_021564389.2 mRNA downstream 22130 50181301 ~ 50198685 (+) False LOC110491040
XM_021564409.2 mRNA downstream 22130 50181301 ~ 50198685 (+) False LOC110491040
XM_021564392.2 mRNA downstream 22131 50181302 ~ 50198685 (+) False LOC110491040
TU176287 other upstream 49987 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 1592775 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 2602882 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3165235 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 4658082 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 1006244 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 1162625 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 1253095 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 1261676 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 1657339 51816510 ~ 51824182 (+) False G156000

Expression Profile