RNA id: XM_021564415.2


Basic Information

Item Value
RNA id XM_021564415.2
length 1623
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110491040
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50181300 ~ 50198685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGCTACAACACCATAGAAGAAGACCTCTTCCGTTTTGTTCAGTTtgggttcctagtgaatacacccaaCTTGTGTCAACAttgggctttttttttttttttttttacattttacctgCAAACCAGCCTAACAAAGACATATTTTCTGACAAGGAAAAAGTGCGTTTTGAGGAGATTCCACGCAATTGTATTGCAAGACTGCTAGATATGCGACTGGCCCCACCAATTCCTACCATCATGCCTGCTCTACTAGAGAGGCCCAAACTGTCCAATGCCATGGCACGTGCCCTGCACAAACACATCATGCGAGAGCGAGACCGCAAGAGACAAGAGGAGGAAGAAGTAGACAAAATGATGGAGCAGaagcagaaggaggaggaggaaaggaagagaaagaaagaggtggaagagagaatgTCTTTAGATGAGACGAAAGAGCAGaTCATGAAGATGGGGGAGAAGCTACAGGGGCTACAAGAAGAGAAACACCAGCTCTTCCTCCAGTTGAAGAAAGTGCtccatgaggaggagaagagacggaGGAAAGAACAGAGTGACATGACAACCCTGACATCTGCTACGTACCAGCCCAGCATGGCTATCCACTCAGGACAACATCTGCTCAGCATGCAAGCAGGTCAAGTGAGTCATGGCCGCTCTGCTGCTCTGCTTGGAGAACGCAGTAAACAGCTCTTCCAGTCCCCTGTCCTTCCTGGGCGTCACTACCAGAGCCAGCCAGGGATGAGCTCCGTGGGCTCCGAGCATGGGCAGTattcagccagccaggcagcccaTGGCCCCTACGGCCAGCTCACCCAGGCACAGCACTCCTCTCCCTTCGCCACCAGCCAGCATGTCCCTGTCAGCTACGCCAGCAGCTCGCAGCTCAGAGGTGCCTCAGCGTTCCAGGCCATGCAGTACCTGCCTCACCAGCAGCAGGGCTACGCTGTACACAGCCACTTTACCTCTCAGCCAGGATTAATCCCCAGTGCTGGGATCCCTCTACAGAAGCAGCTTGAACATGCTAATCAACAATCTGGTTTCACTGACTCTAGTACTCTACGGCCCATGCACTCTCAGACACTTCATGCCTGTGCTGCAGGCCTGCTGCCTACCCCCTCCCTCGCGGTGCAGATCCCCGCTGCCAAGCCTCTCCGGGAAGCTTTACCCATGGAACACCTCCACAGCAGGCTCACCCAAGCCACAGGATCGGGAAGTTAGACCTCTAACCCATCGGGAGAAATCCCAACAATccagcagacccaatctgACAACGTTTCAGAGCTCTCCTCAACCTACCCCTCGGCATGCCTACCTCTCCCACAGCCAATCAGGACAGAGGTTCTACCACAACAAGTAAACTAGCCACACCCACCACCAGCAATTACTGAAGGGCATCATTCTCCACACAGTTTGTCTTCAACTGCTGACATAGTACATCAATGTAGTTTCTTCTGCCAAAAGACTGTACTGTCAGTGTATATATAAGCATGTTTTTTCCCCCTGTATCAGTATTTCAGTAGAATCAATCATGACAACACATGAGAGAATTTGTATATTCAGAACAATGGTGCTGTTTACATTGTTGATGTATTACCAAATTAAACCACTCTTAAAAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176307 lncRNA upstream 52227 50128859 ~ 50129073 (+) True G154119
TU176299 lncRNA upstream 62299 50118747 ~ 50119001 (+) True G154111
TU176298 lncRNA upstream 62658 50118305 ~ 50118642 (+) True G154110
TU176293 lncRNA upstream 70038 50110949 ~ 50111262 (+) True G154105
TU176241 lncRNA upstream 144920 50036103 ~ 50036380 (+) True G154059
TU176371 lncRNA downstream 38792 50237477 ~ 50244279 (+) True G154180
TU176391 lncRNA downstream 60709 50259394 ~ 50259673 (+) True G154199
TU176396 lncRNA downstream 67250 50265935 ~ 50266159 (+) True G154204
TU176672 lncRNA downstream 106188 50304873 ~ 50397242 (+) True G154431
TU176730 lncRNA downstream 181651 50380336 ~ 50447003 (+) True G154487
XM_021564382.2 mRNA upstream 22129 50150461 ~ 50159171 (+) True LOC110491039
XM_021564376.2 mRNA upstream 80676 50098387 ~ 50100624 (+) False LOC110491026
XM_036949980.1 mRNA upstream 87990 50068209 ~ 50093310 (+) True LOC110491010
XM_021564368.2 mRNA upstream 414175 49749113 ~ 49767125 (+) True LOC110490948
XM_021564280.2 mRNA upstream 1442749 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564422.2 mRNA downstream 25053 50223738 ~ 50236226 (+) True LOC110491046
XM_036950031.1 mRNA downstream 225448 50424133 ~ 50433556 (+) False LOC110510939
XM_036950037.1 mRNA downstream 225941 50424626 ~ 50433556 (+) True LOC110510939
XM_036950046.1 mRNA downstream 261662 50460347 ~ 50470125 (+) False LOC110515922
XM_036950048.1 mRNA downstream 262244 50460929 ~ 50470125 (+) True LOC110515922
TU176287 other upstream 80826 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 1623614 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 2633721 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3196074 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 4688921 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 966730 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 1123111 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 1213581 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 1222162 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 1617825 51816510 ~ 51824182 (+) False G156000

Expression Profile