RNA id: XM_021564422.2


Basic Information

Item Value
RNA id XM_021564422.2
length 2165
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110491046
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50223738 ~ 50236226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTAGACGATGAGATCATCAACGTGCGCACTACACAGACAATACAGGCAGGCCCCATTCTGTTGTATCCGGCTGCAGTAAAATGCAATAATCTAAGAATTTGTCTACACGATCAGAATATTGTGTCTTGTATATGAAATAATCGTAATATTCCTGAAACCATGCAGTGTCCAGATGACACTAGTCTAAATACACCAGAAGAGAGAACCTGTCTTTCCTCTGCGCAAAGAAGAGCAGAAATTCGGAGACGAAAATTGCTCATGAATTCTGAAGACAGAATGAACAGAATTGTGGGTTTCGCCAAAGCAGAAGCTGAAAACGACGGATCATCCAGAAGTGTCACGGCACCCGTGTTCCATCTGGACTTGGACAGGAGCGACTCGTGGTCAACATACCCCTCCCCCAGACTGTCTCCATTCCTCCCAGAGGCAGTAGGCAGCAGCCACCCCCACAGTGATCTCCCAGGGTATCCCCTGCCAGACACCAGCGAGGTGCTGGGTGGCAGTGTGGACAAGGATGTGACACCGGGCGTCCGTCAGAGGCCACGCGGAGAGGCCCATCTGGCAGCTGATGAGCCCAGCCACTCCGGATCCCCACGCAGAGGGTTGCAGAAGTACCTGTCCCGCTTTGATGATGCCATGAAGCTCAGAGGCCAACTGGCCAATGAGAAACAAGCCCAGGAGGCAGCTAGCTCTGACCCAGATGAGTTGGACTCCTTCAGGCTCTTCAGGCTTGTTGGCAGTGTCCTCCTTGCTATCTTTGTCAGGGTTTTTGTCTGCAAGTATCTGTCCATATTCGCACCATTCCTCACCCTCGAACTGGCATACATGGGGTTGTACAAATATTTTCCAAAGGTTGAGAAGAAGATGCAAACTACAGTGCTGACTGCCGCGCTCCTGTTGTCTGGTATCCCTGCTGAGGTCATCAACCGCTCCATGGACACCTACAAGAAGATGGGCGACGTCTTCGCTGACCTCTGTGTCTACTTCTTTACATTCATCCTCAGTCACGAGATCCTGCTGTTGGTTGGTCCAGAGGAGGCTGAGACTCCCTGATGGACAGGAAGTCCCTGTGCTATGGCGATGTCACAGAAGTGGACCCCTGATACTGATCCTTTACCCTACCTCCTTCTCCACACCATTTCCCTTCCTGAGTCAGTAGATCCCATAGGGGAGAGAGGGTCGAAGGTGCAATGTCCGCAGGTAGATAAGGGAATAAGACAGAAATAACAGGTTGAACAAGGTAACATAACATTCATTTGGGTTCTGACCCTCTACGACATCTTGTCGATAGGAGCTGCTTTAAGTTCCCTTTTATTTTGCTTTCTACAATGTTTATATAAGGGGTCCAGTTACTTCgcaatttttgttttgtttctggtGAATTGAGTTCTCATTTGGAAGACATACCCTTGTATGCTTAAAGAGTCTAAGCTCTTAGTACATTTACCTTTTAATCTGGGCTAGGAAAAggatagggctcccgagtggctcagcagtctaaggcactgcatctcagtgctagaggcgtcactacaaaccctggttcgatcctgggctgtatcacaaccggccgtgattgtgaTTGGAAGTCTCAAAGGgcgcgcacaattggcccagcgtcgtccgggtttgggtttagccggggtaggtcgtcatagtaaataagaatttgttcttaactgacttgcctagttaaataaaagttaaatttAAAAATGAAAAGGATGGCTTAGGAGTGTCTTTTTGGAAAGTGCGTGTTGTCACTGATATTCAATGTGGGAGCAGTGGGATCTTATCAGCTTGTATATCTGTGCTGGATAACTCTGATTGTGGAAATGTCATGTATTGCTATCCCAGCCTCACTCAAACTCTGTGGCATGTTACATCATCTGTTAATCCCTCATTGTACCCAAATTAATGTATTCAGTTTGAGACAGGTTTTCTATGTAACTTCATTGGTGTGATATCTTGTTTGTCAGATTTACTTGAATGTTTTgcaattatttatatttttttgtataaatgctgtattcataatttatttcatgTGAAATTTTGAAATCGATATCAACACAAAGATATAGAGAAGCTAATGTTGCTTCTGGTAATAACATACTGGAATTAATATGCTGTATTAAACCAATAAAACCTTGGAGCATTTCAC

Function

GO: NA

KEGG:

id description
K22385 CAMLG; calcium signal-modulating cyclophilin ligand

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176307 lncRNA upstream 94665 50128859 ~ 50129073 (+) True G154119
TU176299 lncRNA upstream 104737 50118747 ~ 50119001 (+) True G154111
TU176298 lncRNA upstream 105096 50118305 ~ 50118642 (+) True G154110
TU176293 lncRNA upstream 112476 50110949 ~ 50111262 (+) True G154105
TU176241 lncRNA upstream 187358 50036103 ~ 50036380 (+) True G154059
TU176371 lncRNA downstream 1251 50237477 ~ 50244279 (+) True G154180
TU176391 lncRNA downstream 23168 50259394 ~ 50259673 (+) True G154199
TU176396 lncRNA downstream 29709 50265935 ~ 50266159 (+) True G154204
TU176672 lncRNA downstream 68647 50304873 ~ 50397242 (+) True G154431
TU176730 lncRNA downstream 144110 50380336 ~ 50447003 (+) True G154487
XM_021564399.2 mRNA upstream 25053 50181300 ~ 50198685 (+) False LOC110491040
XM_021564415.2 mRNA upstream 25053 50181300 ~ 50198685 (+) False LOC110491040
XM_021564389.2 mRNA upstream 25053 50181301 ~ 50198685 (+) False LOC110491040
XM_021564409.2 mRNA upstream 25053 50181301 ~ 50198685 (+) False LOC110491040
XM_021564392.2 mRNA upstream 25053 50181302 ~ 50198685 (+) False LOC110491040
XM_036950031.1 mRNA downstream 187907 50424133 ~ 50433556 (+) False LOC110510939
XM_036950037.1 mRNA downstream 188400 50424626 ~ 50433556 (+) True LOC110510939
XM_036950046.1 mRNA downstream 224121 50460347 ~ 50470125 (+) False LOC110515922
XM_036950048.1 mRNA downstream 224703 50460929 ~ 50470125 (+) True LOC110515922
XM_021564446.2 mRNA downstream 339190 50575416 ~ 50579663 (+) False zgc:56585
TU176287 other upstream 123264 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 1666052 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 2676159 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3238512 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 4731359 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 929189 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 1085570 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 1176040 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 1184621 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 1580284 51816510 ~ 51824182 (+) False G156000

Expression Profile