RNA id: XM_036950023.1


Basic Information

Item Value
RNA id XM_036950023.1
length 2997
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110491057
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50272218 ~ 50287727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTATCAAAGCGCATACTTGGACACAGCATATGCCCGCACTTAAGTGGATCTATTTCACACCTGCATGGGGACAGAGTAaagatttgtttatttattttctgggAATTAACTGGCATCTAAATGGAATTTATTTTGTCGAAGAATGTAATCCCTTGCGGAAATACAGGTGGAATGAATTTGGACAGAATCGCAGAGACCGTGAGATCCCCACCGACGCGCGACATGGCCTCTACGTTTCACTTGCCGAGAACTGCAAACAACACTCGAGAAACGTTGGAGAACTCAAGCAGCGAGTCATCAGATACTGAAATAACAGAAAAGGAGAGGAGTGTAGAACACAGAAGTGACGATGGAAACGCGGATGACCCCAAAAAGAAGAAAGCGAGGCGGCAGAGGACTCATTTCACCAGCCAGCAGCTGCAGGAGCTCGAGGCCACCTTTCAGCGGAACCGCTACCCCGATATGAGCACGAGAGAGGAAATAGCTGTGTGGACCAACCTCACCGAGGCCAGAGTCAGGGTGTGGTTCAAAAATCGCAGGGCCAAATGGAGGAAGCGTGAACGCAACCAGCAAATGGACCTGTGCAAGAACAGCTACCTGCCCCAGTTCAGTGGCCTCATGCAGCCCTATGACGACATGTATCCCACCTACACCTACAACAACTGGACGAACAAAGGACTGACCCCGGCTAATCTGTCCACAAAGAACTTCACTTTTTTCAACTCAATGAGCCCACTCACATCCCAGTCAATGTTCTCAGCTCCTAACTCCATCTCCTCTATGACTATGGCCGGAAGTATGGGGGGGCACTCGGCTGTACCGGGGATGCCAACTGCGGGCCTGAACAACATCAGCAATTTTAACGGCATCGGCACCGCTACAATCAACTCAGCCATGTCCTCGTCGTCCTGTCCGTATGGGCCTCCCGGTTCCCCTTACAGCGTATACAGAGACACATGTAACTCTAGCCTGGCGACCCTGAGACTGAAATCGAAACAGCACCCAACCTTTGGATACAGCGGGTTGCAAAGTCCCGGGTCTAGCCTTAACGCCTGTCAATACAACAGCTGACGTATCAGCCGTGATGAAAATAATTTGCGGACAGCTCTAAACCTAGTAGCCTAGCCTACCTGCGAATGGAGCGAAAGACAACTAAACTGGATTAGTTgcaatcatttatttttcaaatgaaTTATGCGGGTTGTGGCCTATGTGTTTACCAATGAACTTGTAGGCTACAACAAtttaaatgtccatgtttttTGGATTTAAAAGTGATGATGAAGATGTGTTACATTGCAACGTTGTACATTAGCCTACATAAGAAACAGACAAAGGATCTCCTATGCATGTTCGCTTACTTGCTTTGAGGGCTCAAACCCATTTGAACTGACTTGCATTGGTCTaaaccagcgtttcccaaactcggtcctggggaccccaaggagtgcacgtttttttttttgccctagcactacacagccgaTTCAAATATTCAACCAAAACCCCCTTGGGGTCCTGAGTACCGAGTTTGGTCAACGCTGGCCTAGGCCCTGTACTCTTGGTCTTGGATTAGAAACAGTTTGGTAAACTTGGATTAGAAACCAAGAAGTGCAACACATATAACTAGACATATCCCGGACTCTGTAGAAGAACAATTGTATTGTACATAGCTCAGACTTTTATGTTGCTCATGTGTTTTACCGTTTATGCAGGGGGTGCCACTGGCCCACCCAATTgtgtcctgtttctgtagcatgacTTTACCTTTAAATGCTCTGTCTGGAGTATTTTCGTTTTATTTGTTTGTTAAAAATAGAATTTCTGCATTTTTAACTAGGGTGCAAAGTGTTTTGTACGAGTTGATAATAATGTAAGATAAAGCAAAATCCATTATACTGTATTCAAAAGGTGATTGAAAAGTAACTTCATGTGTTTATGGTAATATGTTTGAATAAACTACAGCAGAAAGAAGTGCATTTCAGATATTAAACGACAGAAAAGGTATACATGACAAAACATAATATGGTCCAAGTTTATGGAATAAAAGATAGGAGtgcaaagtaaacagcctataaTTAATTATTTCAGGGATGACAACTCAAACCAATTTTCACCTGCACACATGTAAACCCCCCTAGAGCACGGCTTCCCAAACCTGACCatgtaaataaaaaaatttaaaaaaaaattgaaataattACAAATGATAGGCTAACTTTTTAAAATTAGGGCTATGAAAGTATTttacaaatcagtctgacagGACCTTTGACAGTATTTCAATCTGAAGTATGGTGGTTTGAAGCGACTGAAATCAGAATCAGAAAGGTCTGGGCAATCATTTTGTATGATATTCTGTGTAGAAAATAACATCCCctctgggcacagacatcagttcaacgttcaaatttacatttggttgagttgtcaactaacgtcaATTCAACGTGAAATTAAccaaacatttcaccatgtcattgaatTTATGCGAAAGGTTGGGTAAAACAAATACGAAATTCCCTTAGTTGATGGCTTTTtgaaaatccaatcagtttttccAGGTTGATTGAACATCATTACATATattttttggttgaaatgacgtggaaacaatgctGATTCAACCCGTTTTTGCTTTAACCAGGTATCCATGCAAAGTAGGCTACATGTCAGATAAAAAAATGTCACAGCATATTTGTCGGTAAACTTTCCATATGTTGACAAAACTAAATAAACCTACCTTTAACAAGATGGGACCTTTTTGTGTAGTTAAAATTATTTATGTGAGAAATTGCGGTGGTAAGCCTTTATGCggaaatattgatataataaccatcatatcaaagtagACTTGGAGTCAGGAGATGATGTGTAATGTGATTCTCCCACTAtgactcgggaaagcatgcagtttattaggctacatattAAATAAATTATGATAAATTTCACAGGATGGTGAAAGTGCACGATGATGAGCTTGTGGCatttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09356 PITX1; paired-like homeodomain transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176583 lncRNA downstream 75236 50178803 ~ 50196982 (-) True G154355
TU176532 lncRNA downstream 140420 50131515 ~ 50131798 (-) True G154316
TU176531 lncRNA downstream 140949 50130799 ~ 50131269 (-) True LOC118937274
TU176530 lncRNA downstream 142081 50129621 ~ 50130137 (-) False LOC118937274
TU176529 lncRNA downstream 144267 50127723 ~ 50127951 (-) True G154313
TU176670 lncRNA upstream 14097 50301824 ~ 50304149 (-) True G154430
TU177298 lncRNA upstream 105649 50393376 ~ 50446304 (-) True G154989
TU177322 lncRNA upstream 139385 50427112 ~ 50465114 (-) True G155008
TU177323 lncRNA upstream 141824 50429551 ~ 50430060 (-) True G155009
TU177336 lncRNA upstream 144074 50431801 ~ 50468393 (-) False G155013
XR_005034525.1 mRNA downstream 141235 50129515 ~ 50130983 (-) False LOC118937274
XM_021564378.2 mRNA downstream 144815 50124561 ~ 50127403 (-) True plscr3a
XM_021564372.2 mRNA downstream 234326 49962896 ~ 50037892 (-) False LOC110490984
XM_021564373.2 mRNA downstream 234326 49962896 ~ 50037892 (-) True LOC110490984
XM_021564371.2 mRNA downstream 435171 49802029 ~ 49837047 (-) False LOC110490968
XM_036950101.1 mRNA upstream 186905 50474632 ~ 50535936 (-) False LOC110491068
XM_036950090.1 mRNA upstream 186905 50474632 ~ 50535937 (-) False LOC110491068
XM_036950111.1 mRNA upstream 186905 50474632 ~ 50536434 (-) False LOC110491068
XM_036950081.1 mRNA upstream 186905 50474632 ~ 50561304 (-) False LOC110491068
XM_036950051.1 mRNA upstream 186905 50474632 ~ 50561306 (-) False LOC110491068
TU176559 other downstream 114393 50156686 ~ 50157825 (-) True G154338
TU176510 other downstream 164771 50101430 ~ 50107447 (-) False G154300
TU176505 other downstream 165481 50101553 ~ 50106737 (-) True G154300
TU174069 other downstream 1968555 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 2045274 48226299 ~ 48226944 (-) True G151920
TU177312 other upstream 128016 50415743 ~ 50452147 (-) True G155003
TU177396 other upstream 292071 50579798 ~ 50581349 (-) True G155072
TU177629 other upstream 683349 50971076 ~ 50971935 (-) True G155281
TU177680 other upstream 752143 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other upstream 752143 51039870 ~ 51049880 (-) True LOC110491241

Expression Profile