RNA id: XM_036950046.1


Basic Information

Item Value
RNA id XM_036950046.1
length 2291
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110515922
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50460347 ~ 50470125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGCCTTGTGCGTCTTTTCGCGGTCAGCTGACAATTTATCCACCAATCATAAGTCGTATAGGGTTGAAAATCCATCCAATTGAAGCTGCGACTTGTACGTGAAAAAATAGGCTGCATATAACCTACCGACTGGAAACGTAGTTGCGCAGATTGCGATCGTCCGATGAAACTACAGCAacatgaagggcgACGTcactcaaatgaacagcaaaggTCAGGTCCCTGTCCAGATGAACCCAAGCAGTCAAAGACAGGAGGCCCCAGGAGGCCTTTTGGACTCGGTGATGAAAGCGGTCATCGTCATTGGATCTGGCCTCTTTGTCCTGGCAGCCTTTGGGAACTCCTTAACATGGCATCTGCAGAGGTTTTGGGGAGCATCAGGAGACTTCTGGCAAAACCAGTGGACCAAAGTACACCAGAGGTGGGAGGGACACGAGACAGCCTTGTTCTATGCCGGGGCGATGTTTGTGCCTTTTGCGGCTTTCTGGGGGTCCAATCTTCTGCTCATGCTGGTTGATTACACTGGAATGCCCAACTTCATCACCCGTTACAGAATACAGGTGGACAAGAACAACCCGGTTGACCCAGTGAAGCTGCGCCACGCGGTGAAGACGGTGGTCTTCAATCAGCTCTTCATCTCTgctcccatggtggtggtgtgcTGGGCGGTTATGTTTTCTAGTGGGAATCCCTGCGGCCCAGAGCTGCCCACCTTCCACCGAGGCCTGTTGGAGATGGCCTTCTGCGCTGTGCTGGAGGAGCTTCTGTTCTACTACTCGCACAGGCTGTTTCACCATCCTGCCCTCTACAAGCATTTCCACAAGCAGCACCATGAGTGGACGGCTCCCATCGGAGTGGTCTCTCTCTACGCCCATCCTCTGGAGCACGTGCTGTCCAACATGCTGCCTGCCCTGATCGGCCCTGTTATCCTGGGTTCCCACCTGGTCACAACCACCCTGTGGTACGCTCTGGCTCTGGTCAGCACCACCATCTCCCACTGTGGCTACCACCTCCCCTTCCTGCCCTCCCCCGAGTTCCACGACTACCACCACCTCAAGTTCAACCAGAACTTTGGAGTCCTGGGGGTTCTGGACAGGCTACACGGGACCGACGCCAACTTCAGGAAGACCAAGGCTTACGAGCGTCACACCCTGCTGCTCAGCCTCACCCCTCTGACCGAGAGCATCCCAGACCCCCCCAAGAAGGTCCAGTGATTCTACCCCGTCACTTCTGACCTCCACCTACATCCCAATAATCTCTCCTTACTCCTGTAGTGTGCACTCGTCCATACGGTTAAAATcattggattggtgtaaacaTGAGCTAGAGGAAAATCTATGATCAAGTgcacagagaaaggagagattataGAGATGCAATCAGTATTCCCATCCTCAAGTCTGGCACTGGGCTGGCTCCTCTCCCACTGTTCCTTTCTAATCTTGGTAGTCGAGACAGTGGAGTTCTTATTAAAGGTAGAGTCAGCAAAATGACGTTGCACGAGCAGCAACGCAGATGTTGTGATGAGCAAGATGCAAGACTTTGCTCTCACAGTCACACACGCTATCTGCACATGTGCACAGGCTTGCTTCACGCTCTTACAACGTGGTAGCCGCGGGACAAAAAAACGGGAGAAGTTTAGCCTCGTGCTccaacgctcttagttgttgcggaaGTTGACCCAATATGCTGTTTACTTTTGTGCATCTACATCCTATCCCTGACTCTAGCACCTCATTACACTGAAAACACATGGTGGTAATTTACTTATTTTTACCTACATGATCAGAAGACTTTTGTTTCATCTTGTTATAACGTTCCTAGCAGTAGCACTTTCTACCTTTTCAGTCTAACCTTGTTCTCCGCTGTTAAGTATAAACTTTGCAGCTTGGAGATAAGGACGGGACATACCGCTTTTTAATTATAAATACTACATTTTATAATCTGATTGTTGGACGGCACTTTATTACTGTAATTGGCACACATATTAAAGATGCAGTTCTTTGAGTGATTCCTGTGTAACTGGAGAAAAACGTACTAATATAAGGTGATTACAGTATGCTTATTGTTAGTAAGTTTGTGGATTTTGGTCTATGGAAAACCATACAATCAACTTTGTCACCATTTGTATGATCTGTATTGATTGAATGATAAATTGGTCCTTAAAGGGTTGTGCTCTGTAGAGTCTGACTCCTGGGTTGAGATTTGGGAGTCAGTATAGATTTTTACATGACCCGTAATTCATAAACTGTGCCATTGTTGCAGAATAAAACCTtaacaaaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176760 lncRNA upstream 7784 50416268 ~ 50452563 (+) True G154514
TU176730 lncRNA upstream 13344 50380336 ~ 50447003 (+) True G154487
TU176763 lncRNA upstream 15794 50442005 ~ 50444553 (+) False G154517
TU176765 lncRNA upstream 16043 50443435 ~ 50444304 (+) True G154517
TU176766 lncRNA upstream 16977 50442005 ~ 50443370 (+) False G154517
TU176774 lncRNA downstream 7763 50477888 ~ 50479523 (+) True G154524
TU176775 lncRNA downstream 8315 50478440 ~ 50488294 (+) True G154525
TU176776 lncRNA downstream 8587 50478712 ~ 50480108 (+) True G154526
TU176778 lncRNA downstream 8655 50478780 ~ 50484640 (+) False G154527
TU176779 lncRNA downstream 8655 50478780 ~ 50487600 (+) False G154527
XM_036950031.1 mRNA upstream 26791 50424133 ~ 50433556 (+) False LOC110510939
XM_036950037.1 mRNA upstream 26791 50424626 ~ 50433556 (+) True LOC110510939
XM_021564422.2 mRNA upstream 224121 50223738 ~ 50236226 (+) True LOC110491046
XM_021564409.2 mRNA upstream 261662 50181301 ~ 50198685 (+) False LOC110491040
XM_021564446.2 mRNA downstream 105291 50575416 ~ 50579663 (+) False zgc:56585
XM_021564453.2 mRNA downstream 105291 50575416 ~ 50580216 (+) True zgc:56585
XR_002468779.2 mRNA downstream 208689 50678814 ~ 50689147 (+) True LOC110491108
XM_036950140.1 mRNA downstream 247455 50717580 ~ 50884089 (+) False LOC110491126
XM_036950156.1 mRNA downstream 247456 50717581 ~ 50884089 (+) False LOC110491126
TU176287 other upstream 359873 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 1902661 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 2912768 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3475121 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 4967968 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 695290 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 851671 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 942141 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 950722 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 1346385 51816510 ~ 51824182 (+) False G156000

Expression Profile