RNA id: XM_021564446.2



Basic Information


Item Value
RNA id XM_021564446.2
length 1236
RNA type mRNA
GC content 0.48
exon number 7
gene id zgc:56585
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50575416 ~ 50580216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGCGTGCGCAATTCTTACAACCAACGATCCGACGTCATTGAATGATGTTGATCGTCAAATCAGTTCTGACATGGACTCAGCGCTGACTTTAGAACGTTTCTCCGCGACGTCAAAAGTCTTGTTCTTGTGTGAGTTTGAAGAAGTTTGCTACCGCGTCTTCTCTGCTTATCAGGCTACCTTGTTTCAGTGATGGCGTTACATGGCAAAGTGGCTTTAGTGACTGGTGCGGTGCAAGGTTTGGGTAAAGGTTTCTCAGAAATTCTTTTGCAAAAAGGAGCAAAGGTAGCCCTGTTGGATATAAATGAGTCAGGGGGGAAGGATTTGAAGGCTGCCTTTGATAAAGAATATGGACCAGACAGAACACTGTTTCTTACCTGCACCGTTGAATCTGAGGAACAACTAAAAGATGCCTTTCAGAAAACGGTAGAGGCGTTTGGGGGCTTAGACATCGTCTGCAACAACGCTGGTATCATCGATGAGACGAACTGGGAGAAATGTGTGTCTATAAACCTCAATGGAGTGGTGAGAGGCACATATCTGGCTCTCCAGCACATGAAAAAGCAGAACAGAGGGCAGGGAGGCGTCATCATCAACATAGCGTCTATGGCAGGTCTGGGTCCTCTGCTGACTGCTCCCATCTACACAGCCACCAAACACGGGGTGGTGGGGTTCAGTCGGGCTATGGCGGATGTCTCCCGTTTGTGTGACTACGGGGTGCGAATTAATGTCCTCTGCCCTGCTTTCGTCCAAACCGCCATCCTCTCCTCCAtgagttcagaggagactgcgggaCAGTTCGCAGGTCTGAGGGGAGTGGCAGAGAAACTACTGGAACAGTTTGGTGTGCTTGAAGTCTCTGAGGTAGCCAAGAACTTCTTGAAGCTGGTGACGGATGAGAGTCGAAACGGAGAGGCCCTTTTGGTACGGAAGGAGGGAGCTTCATACGTAACGTTTCGCCAAGAGGCTTCCCAGCTGCCCAGTATCCTTGCCCCCTCTCTGTAGCAGAATCCCTCCCCCAGCAAGCTGGTATGTCTGCACACTAACAGAAGGCCTGGACCTGTGTGTTCCGGTCCTGTTGCTTGTATAAAATAACTTGTGTAAACAACATGATTGTATTATCACCTCCCACTATATAAGGGACATGTAACCATTTACTCTTCGACTTCTTACCTGTGAAATCAGAGATCTCATTCTTGCAGCTGCATGATTAAAGATTTTTCTATTATACAATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176839 lncRNA upstream 6661 50568324 ~ 50568755 (+) True G154584
TU176838 lncRNA upstream 7431 50567677 ~ 50567985 (+) True G154583
TU176837 lncRNA upstream 8297 50566823 ~ 50567119 (+) True G154582
TU176835 lncRNA upstream 11231 50563883 ~ 50564185 (+) True G154580
TU176834 lncRNA upstream 12427 50562705 ~ 50562989 (+) True G154579
TU176848 lncRNA downstream 5870 50585533 ~ 50586189 (+) True G154593
TU176849 lncRNA downstream 7611 50587274 ~ 50587589 (+) True G154594
TU176847 lncRNA downstream 8766 50588429 ~ 50588723 (+) True G154592
TU176846 lncRNA downstream 20055 50599718 ~ 50600151 (+) True G154591
TU176919 lncRNA downstream 153242 50732905 ~ 50733216 (+) True G154662
XM_036950046.1 mRNA upstream 105291 50460347 ~ 50470125 (+) False LOC110515922
XM_036950048.1 mRNA upstream 105291 50460929 ~ 50470125 (+) True LOC110515922
XM_036950031.1 mRNA upstream 141860 50424133 ~ 50433556 (+) False LOC110510939
XM_036950037.1 mRNA upstream 141860 50424626 ~ 50433556 (+) True LOC110510939
XM_021564422.2 mRNA upstream 339190 50223738 ~ 50236226 (+) True LOC110491046
XR_002468779.2 mRNA downstream 99151 50678814 ~ 50689147 (+) True LOC110491108
XM_036950140.1 mRNA downstream 137917 50717580 ~ 50884089 (+) False LOC110491126
XM_036950156.1 mRNA downstream 137918 50717581 ~ 50884089 (+) False LOC110491126
XM_036950131.1 mRNA downstream 137919 50717582 ~ 50884089 (+) False LOC110491126
XM_036950145.1 mRNA downstream 137920 50717583 ~ 50884089 (+) False LOC110491126
TU176287 other upstream 474942 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2017730 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3027837 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3590190 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5083037 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 585752 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 742133 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 832603 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 841184 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 1236847 51816510 ~ 51824182 (+) False G156000

Expression Profile