RNA id: XM_036950145.1


Basic Information

Item Value
RNA id XM_036950145.1
length 5550
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110491126
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50717580 ~ 50884089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCCTTCTCGGTGGCATTGATCACCCCTCATCGCTAGCTCCTCCTTCTCGGTGGCATCGATCACCCTTCATACTGTACGCGGCAACAACACACCGAGAGAGAGGCGCTACTGGGGGAGGGAAGAGGATCAGTCGACGCCGTGGATATGATCTAAAATAATATCCGAAGAGGCAAACAGTACACCTTTCTCCCAAATAGCACTTTGATTCGAAAGGTGGAAAACTGCCAACAAGATTACTATTATTTAAATTCACCCTACCGACCCCCCTCCCTCTACTCCACCCTAGCCACCGAGATGCACACCGAGACTCGAAGCAAGAAAtGCCTGTCGAGTCCTAAGGCCAGCGGTGGTGCCAGCTCCCAACCACAACCCAAGAAGGAGTCCCAACCCCAGCAGCCCAAGTTGACCAAGAAGGAACCCAAGACAGAGCCTCATACCCAGGAGGAGGAAGAAAACATGCCCTCAGTACACATCAAACCAGAACCACAGGAGGTGGAGTCCACGcaggctGAAGTAGGTGAGGAGTGTCCCAAGCCTACAGACCTGAAGATCAAGACAGAGAAGACCCAACCTGTGTCTCCCCCTCCACtctgcacagacacagacacagacacaacaacagacGACTCCTCCCTCCCCCCGGAGGACCAGACGGAACCTGTCGACCTGTCACTCGGCAAGCCTCGCTCCTCCCTGCCCGTCTCTACGCCGACAGCCAACCCCGTCCCGAGTTCCGTGGCGATGCCCACGCTGTCGGCAACCCCCATCCCTACGatGCTCTCCCCCGGGTCCATCCTAGCGTCCACCCAGGGGGCAGGCGGTCAGCAGATCCTGCATGTCATCCACACCATCCCGTCGGTTAACATGCCCAGTAAGATGGGCCAGCTGCAGACCATCCCCGTGGTGGTCCAGTCTCTGCCCGTAGTCTACACCACCATTCCCACAGACGGTGTGGCCACCGCTGCCATCACGGTCCCGCTCATCGGGAGCGACGGGCGCTCGGAGGGATCCGTGCGTATCAAGCCTGGCTCAGCGTCTCCAGTGGAGTACCAGAGTGACAGTGATGTGGAGAGTGGGACAGAGTCGGGTTCAGCTTCCTTCAGTACACCGGGACTGGACACAGGgtcaggCGTAGACATGGACATGCAGGTGGATCCTGATTCGCCAGACATGAAGAGGAGACgtgttcatatgtgtgactaTGATGGCTGTAACAAGGTGTACACCAAGAGCTCACACCTCAAAGCCCACCGCAGgatacacacagGAGAGAAGCCGTACCACTGTACATGGGAGGGCTGTACCTGGAGGTTCGCCCGGTCAGACGAGCTGACGCGACACTTCCGTAAACACACGGGCATCAAGCCCTTCCGCTGCACCGACTGTGACCGCTCCTTCTCCCGGTCTGACCACCTAGCCCTACACCGGAGACGCCACGTcatgatgtgaaccatgacccctgacctttgacctttaAACCTTAACCCCCTACTACCTTCGCCCTCCAACCCATCACCTCCCTCCCCAGCCCCCCTCGGGACTCAGATGGGAGGGCCTGAACTCTGACCCCTAGAGGTTCTCTGCTGTGCCACTTCCTTTTactgttccccctcctctcctctctaaaaaATAATCAAGGTTAAGACAACATACATGTTCCATGCGGGAGCGTTTGAAAATAAACTCGTTCATTGGACCAGCGCTGATTCGACAGGATTAGCATTGAAAATGTCACCAGTGGTCAGGAAATCAAGTAATAAAGTGGCTGTAGATCATTtgaaaaacatttaaatgaatAGAATGGCAGTAAAACAGTTATGTTATGTGTTTGCACAGTAGTTAGCTGAAATTCACTATGATTGTGTTTATTATCCACTTTGATGGCGAGCTTTCTGTACTGCTAAAATTCACTTTCAGTCATTTTTGATCGCATTGCTGGTCCATTGTTTAGACCTAATCTTCTCTACGCTACGCCTCGTCCTCCATTTTGAACTGTGGGTCATCGTGGAGATCATTACATTaaagaggtggagaaggaagATCCCAAAAGGATGAGAGgagtttgttgttgttttctggTTGCTTAGCACCTGAAGGGGTAGTCCACAACTCTCATACCCCACAGTTTACCTCCTCGTTTCTCCCTCACACCCCACTCAGTGTGCACACAGCCAGAGGCTATCTACTTCAACAGCACCCTATCCATCCAGAAGATCGACAAACCAGTGAAGACAAACCTgggatacagcagagagagagatggacaggctggacagagagagagacggaggacatACTTTGAAATGATGCAGGGTTACCTACATCACACACTCAGCTCAGAGCAAGAGGataaggaggacagagaggaggtggaggcatGTTTGTTTATTTGAGAGGGGAAAACACTTCAGAGATTACATTTCTGTCTAGCAACTGTTTACTGTGTTTTATCATCTTCTGTTAACCTGCGTTGCATGCATGGGCTAgctgcctgtatgtgtgtgtgattgtgtgtgagtgttagtgtagtgtgtgCTATTTAAAGACAGTTGATGATGCATCGTGTCCTCTCCTCCATACATATCCTTTCCTCAGCAGAGTCAGCAGACCCCTCGGGTGTGGTGGTGTAGAAATGTCTTATTCAACCCCCTTCCACGCCATTTCTCCGCTCCCCCATCTCCTAAAACAGGGAGCTACAAGACTGTGAAGATTCTGTTTTATTAATATTTTCAATCAGAAATTAAATCATGTTCACTTGCCCCACATTTATAGCTTGTTGTTCAGTAACAGTATTtgtgttgttttaaaaaaaaaaggcctTCTGTAAGTTTTTTCaatttcttctctttctctttctatttgCTAATGATTGGCTCATAGCATAATAACATCCCTTTTTTTTACTATTTCATATCCTTAGATTGTGTTTGAGGCTGTAAAAGTATAACAAGAAAGAGGTTGAGATTACAAACTAGGGgagcttgtgtttgtgtgtgtaacaaATAATCAGAACTGAGGATTTTAGAAGTGTGTGTTCGGTGCAGCCCGTCGGAGCCTTAATGAATCAAAGTCAATCTGGGAAACTCTGTTTTTAGAAACGCACGTTTGTTTTGGTCTTCAGGGTTACCCGGGAAACGGGGTCTCATTGCCCTGCCGACACATCACAGCATTTCTACCCAATTATCGACCCagatcagggcctgtattcacaaagagtctcagagtaggagttctGATCCATATTATCATATTCATTattatctaaaaggctaaactgatcctagatcagtactcctactctgagCCTGACTGATCTCCATGTCTTGGGGTGGTTGTTTTTAGCTCCTGCTCTCTGTGTTCACTTGATTATGCAACCTCCACAGACCTCGCTCCTAGCGCAGTACTGGGGTAAGTGGTTAAATATGTGTTGCTACAGGAACATATACAGCACTCGCTACTAAGCACTGTTCTGGAGTCAGTGGTAATGTACATCTTGCTACTGGGACATACACAAACCTCCCTCTTAAGCGCTGTTCTGAAGTCAGTGGCTAAGTACAGCTCCTATGGTACATGCGTACAGAGGGCATACTAAAGAACATGTAAGTGTTTAGCTCTCTCACTAACAGTCGCAGCAGCCATCATCATTTCAAACGCTAGCTAAATAAAACACGATTGAATTtaacatttcatttttttctgttgacaatgtaaaaacaaagtgcAGATAATAGTGCTTTTCTGACTGTGAACCCAGCCTTGGTGTGGGTTGAGTTGAGCGCATGCCTGAAGCAGAGAGGGATTTTATTGGTCCACACAGAGCAATGCAATGCTCCTATGAGATTCTCTCATTCTCTGCTTCAACCCCTAACAATGTTACTAAGCACATATTTCCAGAAGAGGACATGCATTTGATTGCAACTTGTTATTAGATGGTATTAGACATTAAGGACTATGAGAAATAATTCAAGAGCAGGaagtgtacatactgtatataatcaAAAAGCATAATAAATGTAACGGGTGGAGTTCTATTTTTAACACTGACTAGACAATGTGAAAAATATCATTTTTTCTTTTATTTTCTACTCTGTTGGATGGAtttacaactgaaatgtgttataaaaaaaaaaagtgttcttTTTTTTAACGTCCCAAAAATCGGTCCCGTTTGTGTCGTGCACATTTAGTTTTTGTGAGGTTGGTGAGCATGTCGGTGTGATTATGCTGCCCTAACCTTACAGTCCTAATGACAtgcaacacacaacaacaaaaccaTGAAGGACCGTCTCAACCTGAACAaccgtccaaaatggcaccctactatctaatgcacttcttttgaccaggccccCTAGGGctttggttaaaagtagtgcactatatagggaatatggggcCATTAattgagacatagacagtatggGTGGGGATGGAGAGGTAAAGGTGTTAGTCAACCCAGAGTTGAAAATCTGATATGATCTAACATCTGTTATCATTGGTCAAACCCACCTTACCTCATTGATGCGTACAATACAAGTTCCCCTTTAATGTCCATTGTGAAGTATTACTCCATATACCACAAAGAAAACAATaccagaatagatcaatacaatgCAGTACGTCAATATAGAAATGTTCTGTTCAACAAAAGACAGATCCATTTATGGTTTAGCCGTGGCAGCATACGACTTAAgactctatactgtactgtatttgtaCAAGCCCATTTATCCACTTCACTAGTCACCCCTCACTTCAACAATATGGCACCACATAATGTAAGCGTggattgattgtgtgtgtgtgtgcatgtgtgtataagtgtgtgagtgtgcctcTTATCATTAATCAAAACTCCTTTTCTTAAAGTAACTGTCTAGTGTTGGCAGATTTTTATGACATATCACCTAGAATTAATAACAACGAGTGAAATTGTTTACTTCCAGTTTGTTTTAATTCACTATGTTAAAACACAGGTTTTCTGCGTTGCAATAGTGtaggtgtaccccaacaacagaatggtatggGCGTATACCGGTCATTAAAAATATTTGTGCcagtagaccgctgattggccagctcatcctccttcaggaggatgacatcatcctctatgaGGAAATGGCAAGCATTTTTTAAACGGTCTGTTTGAGTTACACATTTGAGCAGTGTCCAAATGATTGAGCAGCATCCAAAtgatgctttggccacaaatacaagtattggatgagtcaacaacattatttcggtatgagttaacagaatagattgtcactggacagttactttaacaaCCAGAATTGTAGGTATtttatattgaatgcattaacttTTGGGCCAGTACTATATTACTCAGTGCAATGCAGTTATTGTTAATGTCATTAAtattatttgttttgtatttgtacAGAACAAATCTGTAAAGATTAGTGAGGAAGAACGTGAGCTTTTTGATACTGTGAAAAATGGTGTTTCATTAAGTCTGTTTCCCCCTGTACAGTTGAGATTTACCCCACTCCTTTTATAGAATAAAAGGTTTTTGGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176846 lncRNA upstream 117432 50599718 ~ 50600151 (+) True G154591
TU176847 lncRNA upstream 128860 50588429 ~ 50588723 (+) True G154592
TU176849 lncRNA upstream 129994 50587274 ~ 50587589 (+) True G154594
TU176848 lncRNA upstream 131394 50585533 ~ 50586189 (+) True G154593
TU176839 lncRNA upstream 148828 50568324 ~ 50568755 (+) True G154584
TU177007 lncRNA downstream 93484 50977573 ~ 50979292 (+) True G154740
TU177070 lncRNA downstream 100045 50984134 ~ 50984935 (+) True G154776
TU177090 lncRNA downstream 134551 51018640 ~ 51018990 (+) True G154796
TU177059 lncRNA downstream 155783 51039872 ~ 51042833 (+) False G154775
TU177063 lncRNA downstream 155783 51039872 ~ 51042833 (+) False G154775
XR_002468779.2 mRNA upstream 28436 50678814 ~ 50689147 (+) True LOC110491108
XM_021564453.2 mRNA upstream 137367 50575416 ~ 50580216 (+) True zgc:56585
XM_021564446.2 mRNA upstream 137920 50575416 ~ 50579663 (+) False zgc:56585
XM_036950046.1 mRNA upstream 247458 50460347 ~ 50470125 (+) False LOC110515922
XM_021564551.2 mRNA downstream 76042 50960131 ~ 50971362 (+) False LOC110491193
XM_021564543.2 mRNA downstream 77037 50961126 ~ 50971362 (+) False LOC110491193
XM_036950173.1 mRNA downstream 77897 50961986 ~ 50972173 (+) True LOC110491193
XM_021564562.2 mRNA downstream 98869 50982958 ~ 51008552 (+) False sat2b
XM_036950213.1 mRNA downstream 98869 50982958 ~ 51008552 (+) False sat2b
TU176287 other upstream 617109 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2159897 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3170004 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 3732357 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5225204 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 281326 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 437707 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 528177 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 536758 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 932421 51816510 ~ 51824182 (+) False G156000

Expression Profile