RNA id: XM_036950241.1


Basic Information

Item Value
RNA id XM_036950241.1
length 3391
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110491269
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51114207 ~ 51136900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAAAATGCATGCAACGCAACACTACAGTTTGAAACCGACCAACAGGCTACTGTTGattcactcactctcactctagTCACACGTTCTGGAAATGTTGTGAGAGTGCTTTCTAAATATAAccgcagagagagagcgggagagagagagcacctttCCAGCCGACTAAGGGTTCTCGCTGAGCTCACATACACGGGCCTGGCAGGAGAGAGAagggtgtgaggagaggagaccgAGTGCAACTTTGACAAGTCCCAAAATAAAACTTTTAGAGGGAGTTGAAACTTGATGTGAACGGGACGACAGTCAAGGCAGCTGCAGCAGAGGATGGAGGAGGACGCCCCGCCTAAGAAGTCAGTGGCGGAGCTGGCTGGAAAGTTCAAAGCTCATGCCCCTCCCTTCCCCACGGGAACTGACGGGAGTAATAAGCCTGTTAGGAGACGCCCCCCTCGAACCCTACATCTCCCCAAGACCACAGCACAGGGACAGGTGGACGAGGAGAAACCCATCTCCCCGTCTCTGCATCCTGCCAAAACCAAAAGGAACTCTGCTCTTATTGAGAAACTGCAGgctaaCCTGGCTTTATCCCCCTGTTCCCTTCTACCCTCTCCTAAGAGCCCTGGGCTGAAACTGTTGCCCCCCTCCttcacccccacctccacctgctcccccatccctcctgttACTACAGTAACCCCCACCTCCCCAGTCAGCAGGGCACCCCTCCCTCGGTCGCTGAGCGAGGAAGAGACACCTGCCACCTTTGAGGTCCCAGCCACACCCACCGACGGATCCCTACTGCCCAGTATCAACAAGGGAAGAGCCCGCCTCTCCATCCGGCGACGCCCACCTTCGAGACGCCACAGGAAGTCCAGCGGAGAGGAAGGAGACGGGGTGACGGGTGAAGAGATGCCCCTAACTACACCCGACGACCCTGAGGCCAAAGttggggaggaagagaaaggagagggggaggaggtgtttGAGAAGGAAGTGGAAGAGAAGGATGGTGAAAGAGCAGACACCACTATGTATACCAAAGAAAAGATAGAGACAGGCTCCTCTACCCCTGCTAACTCACAGCAACAGATTGCCACAACAGACAGATCAACTACAGACCCTGACCCACTGGAAAAGACAAAGTCAGAAAAAacgctggagagacagacaggagaggagagacaggaggacaggcagacaggagaggaggcaaCAGGGTCTAGAGGAGAAGAGGTGAAAGATTGTGGTCAGGGGTGTGGAGGAGAAGaaaaggagaaggggagggagactTGTTCAGTGGAGGAgtcatctacagagagagagaaagaagagggggaagagctGGCCTGcaaagaaaaggagggagagagagatacagactgcAACGAAGAGAAGGAGAACACCAAGCTCTGATGGGCCGTAACCGCACCATGCCCCTGCCTTACAGAGTGGGAGAGCCCCATAGTGTGCACTAACTCCCCTCATCCCATAGCACATAGTGTAGTGGAAAAGGCGAGACTAGTATGGACTGCAGACTATGCCACTGGATGGACTCCCTTTAGTCCTCTGCATCTGGAAGGTCCTACACTCTggttccatcccaaatggcacactatgcCCAATATAGTGCAGTACGTTTGACCAGGTTcaataggcctctggtctaaagtagtgcactatatagggaatagggtgtcatttgggacataacTATGCACATTTTTGGACATGTTTCTTGTAAATTCTTATTTGGTGTCAGCCTGTGACTTTGTTATCTTTGGGCAGATTAATGCAAGGGATTTGCCTGTACAGCTTTCCCCAAAACATTTTATGACAAGACCTGGTAAATTATAACATTTTCCACAAAATACACAACATGCAGATTAGTAAAAACAACAGATTTCTAGAAAACGTTAGGCTATTTGATTTAAACTGGTGTTGAGAACAACGCTGCGGAGGCGGGCggcagctgtgtagtgctagggcaaaaaacatgCACCCAGGGGGGGCCCCACCGAGTTTGGGAATCCCTGGTCTAGATAAATCAATTAGATAAATCAATGAATGTCccatttttgttttttgttttcacTTCATCTCTGTTTTGATATTTTGTTACAATTAGGCTGGGGAAATGTTAGCTAAGTTGAAGTGAGTGCTAATGATCATCTTTAGTCTAGTTTGCTCACATATTAACTGATCAGAACATTTCGCTAGCATTTTATACAAGTGAATTTTGTGACTTGTGACTTGTCTGAtaatcaatcaatgtgattttgtttcactgaatctctgtCTGTATATTTGGTTAATTGATCTCTGGCTGGACAAGTGGAAGTGGTAGATCATCTATTCGTTTGCTCATCTATCCCTGAttagaaacatttagcatgcaatAATGTAAATCAAGATGATTATTTATCTATGGACTCACGTACTGTAGTAGCCTTATATAGAGCCTAGGCAATTTTCACATTGTCCCAATCCCACTGAAATCAAAAATCCTGACTCCTGTCTTGCATGAACATTCCAAACTTTATTCTGTAATCCTGTAGTCTAATAATGTAGTCTGGTATTGCTGCCGATGTGAGAGCTTCAGTAGAGAATGTGTGATCAACAAATGGTAGGCCGATGAGGGTAGATATggaaatattttttaaactgttGGTCTCCGTTAAGATACCTTGATATTTAAACACTTTCCTCTCTTCATCTCGCTGTTGTTCATGGGCTGATCTGCTATCTGTAtaatcatcaactagatttagcCAAATAGTCATTAATTGGAGGTAATCTAGCAAATTTAGCAACTTTGGACTTTtgttggggctcccgagtggtacaGTGGTCTAAGTCActccatctcagtgcaagagatggacctggtttgaatccaggctgtatcacatctggctgtgattgggagtcccatagggcggtgcacaattggcccagcattgttcggggtaggctgtcattgtaaataagattttgttcttaaactgacttgcctagttcaataaaggttcaatttgaacaaaaaatattaaaaaatgaCCGCCGTTTACAAACTTTGTGTGATTCGACAACGCTAAAGCCTACTCTGGGTGCACTCTGTGTGTCCTGAGCGCGCTCTgtgtcttattggacaagttcaggtaggtCTCTCCCCATTTCGGTCTGTTTGCTTCTTTTGCATCATTTCAAATGGGTGttaaaatcgaatcaaatcaaatgttatttgtcaaattagccgaatacaacaggtgcagctAGACCTTATAATGAAAttcttacttataagcccttgaccaacaatgcagtttttagaaAAATGCCtaaagaaaaataagaaataaatcattaaagagcagcagtaaaataacaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177131 lncRNA upstream 2436 51111535 ~ 51111775 (+) True G154837
TU177130 lncRNA upstream 5137 51108800 ~ 51109074 (+) True G154836
TU177123 lncRNA upstream 15770 51098221 ~ 51098441 (+) True G154829
TU177119 lncRNA upstream 23494 51090489 ~ 51090717 (+) True G154825
TU177117 lncRNA upstream 24088 51089767 ~ 51090123 (+) True G154823
TU177111 lncRNA downstream 8636 51145536 ~ 51147897 (+) True G154817
TU177208 lncRNA downstream 157902 51294802 ~ 51299854 (+) True G154901
TU177876 lncRNA downstream 213726 51350626 ~ 51355466 (+) True G155515
TU177850 lncRNA downstream 251077 51387977 ~ 51400214 (+) True G155489
TU177852 lncRNA downstream 273437 51410337 ~ 51410863 (+) True G155491
LOC118944166 mRNA upstream 19364 51094723 ~ 51094847 (+) True LOC118944166
XM_036950237.1 mRNA upstream 27080 51067491 ~ 51087131 (+) False LOC110491259
XM_036950231.1 mRNA upstream 27080 51067492 ~ 51087131 (+) True LOC110491259
XM_036950217.1 mRNA upstream 105659 50982958 ~ 51008552 (+) False sat2b
XM_021564639.2 mRNA downstream 96805 51233705 ~ 51236559 (+) True LOC110491287
XM_021564659.2 mRNA downstream 110841 51247741 ~ 51293224 (+) False LOC110491302
XM_021564667.2 mRNA downstream 110841 51247741 ~ 51294746 (+) True LOC110491302
XM_036950262.1 mRNA downstream 180221 51317121 ~ 51339537 (+) False LOC110501653
XM_036950260.1 mRNA downstream 180224 51317124 ~ 51339537 (+) False LOC110501653
TU176287 other upstream 1013737 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2556525 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3566632 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 4128985 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 5621832 45472745 ~ 45492379 (+) True G148191
TU177155 other downstream 28515 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 184896 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 275366 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 283947 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 679610 51816510 ~ 51824182 (+) False G156000

Expression Profile