RNA id: XM_021564639.2



Basic Information


Item Value
RNA id XM_021564639.2
length 1157
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110491287
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51233705 ~ 51236559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caGACCGCTCAGTGGAaccctgtgacacacacagcTTACGTTTTAGgtcagCACTGAGACAGAAGGACATAATGGCTCTGACCAAACCTATGAATACCATGCCCATGGGCCCATGGAAGATCACAGTGTACGACCAGGAGTACTTCCAGGGAAAACGTATGGAGTTCACCGCATGCTGCCAAAACATCATGGAGTGTGGCATGGAGAACATCCGATCCCTGAAGGTTGAGTGTGGAGCttGGGTGGGTTATGAGCACTCCAGTTTCAGTGGCCAGCAGTTTGTCCTGGAGAAGGGAGACTACCCCCGTTTCGAGGCCTACAGTGGCAGCAACTCCTACCGCATCGAGAGGATGATCTCCTTCAGACCCATCTGCTCCGCTAGCCACAAGGAGTCCCGCATAACCATCTATGAGAAGGAGAACATGATTGGCCGCCAGTTTGAGATGTGTGATGACTACCCCTCCCTGCAGGCCATGGGCTGGTTCAACAATGAGGTTGGATCCATGCACATCCAGAGCGGAGCCTTCGTGTGCTACCAGTTCCCCGGCTACCGTGGCCACCAGTACATCATGGAGTGTGACTGCCACGGAGGAGAGTACAAGTGTTACCGTGAGTTTGGCTCCCATGCCCAGACCCCTCAGATCCAGTCCATCAGGAGGATTCAGCACTAAGCAGGAACCACCTTCATCCCTTCTCTTCTACTCCTccactccttcttcttcttcttcttcttgttctaCTTCCTACTCCTCttcccactcttctctcccctctcctacacCTCCTCTCCCTTGCCCCTCCCAGTTCCACTAATCAGGCTAGTCAAGGCAGGATTCTGGGCCGGTCCTCAGGTGCTTACTGACGACGTTACATGTTCATGGCACAaaagaaaaaaacagaaaaaaaacaaattgAAAGAAAGATAGAGGGAATAACACAGCTGAGAAAAACAGTACCATGGAAGAATACATCCGCGACTCCTCCCAGAGGCTGGTCGCAGAACTATGAAAACACCTCAGGACCTTTTGCTTTTCTTCATCCACATCATCATCAGCTTCTttttcaccatcatcatcactattgCCTGTCACTGTGGTTGTCATGGTAAACATTGTATGAGATTGATGAATAAAGAGATTGAGCAAAAGAAAGCGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177111 lncRNA upstream 85808 51145536 ~ 51147897 (+) True G154817
TU177131 lncRNA upstream 121930 51111535 ~ 51111775 (+) True G154837
TU177130 lncRNA upstream 124631 51108800 ~ 51109074 (+) True G154836
TU177123 lncRNA upstream 135264 51098221 ~ 51098441 (+) True G154829
TU177119 lncRNA upstream 142988 51090489 ~ 51090717 (+) True G154825
TU177208 lncRNA downstream 58243 51294802 ~ 51299854 (+) True G154901
TU177876 lncRNA downstream 114067 51350626 ~ 51355466 (+) True G155515
TU177850 lncRNA downstream 151418 51387977 ~ 51400214 (+) True G155489
TU177852 lncRNA downstream 173778 51410337 ~ 51410863 (+) True G155491
TU177853 lncRNA downstream 194307 51430866 ~ 51501997 (+) True G155492
XM_036950245.1 mRNA upstream 96805 51114207 ~ 51136900 (+) False LOC110491269
XM_036950241.1 mRNA upstream 96805 51114211 ~ 51136900 (+) True LOC110491269
LOC118944166 mRNA upstream 138858 51094723 ~ 51094847 (+) True LOC118944166
XM_036950237.1 mRNA upstream 146574 51067491 ~ 51087131 (+) False LOC110491259
XM_036950231.1 mRNA upstream 146574 51067492 ~ 51087131 (+) True LOC110491259
XM_021564659.2 mRNA downstream 11182 51247741 ~ 51293224 (+) False LOC110491302
XM_021564667.2 mRNA downstream 11182 51247741 ~ 51294746 (+) True LOC110491302
XM_036950262.1 mRNA downstream 80562 51317121 ~ 51339537 (+) False LOC110501653
XM_036950260.1 mRNA downstream 80565 51317124 ~ 51339537 (+) False LOC110501653
XM_036950266.1 mRNA downstream 138765 51375324 ~ 51405615 (+) False LOC110491314
TU177155 other upstream 66531 51165415 ~ 51167174 (+) True G154859
TU176287 other upstream 1133231 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2676019 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3686126 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 4248479 46981719 ~ 46985226 (+) True uevld
TU177860 other downstream 85237 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 175707 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 184288 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 579951 51816510 ~ 51824182 (+) False G156000
TU181296 other downstream 2785049 54021608 ~ 54021904 (+) True G158778

Expression Profile