RNA id: XM_021617652.2



Basic Information


Item Value
RNA id XM_021617652.2
length 506
RNA type mRNA
GC content 0.50
exon number 4
gene id rl28
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51412121 ~ 51417154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTCGTCAACATGTCTTCTCATCTGCAGTGGATGGTCATTAGGAACTGCTCCAGCTTCCTCATCAAGAGGAATGGACAGACTTACAGCACCGAGCCCAACAACCTGAAGTCCAAGAACTCCTTCCGTTTCAACGGGCTGGTGCACAGGAAGACTGTTGGTGTTCAGCCTGCAGCTGATGGAAAGGGTGTTGTTGTCGTGCTGAAGAAGCGTGCAGGCCAGCGCAAGCCTGCCACTTCATATGAGAAGATCACCATCAACAAGAACTCGCGTGCCACTCTCAGCAGCCTGAGGCACATCATCCGCAAGAGCAACTACAGAAAGGACCTGCGCATGCGCCATCCTGATGAGCCAGAAGCGTGTGGTGGTGGTGAAGAGGCGTTCCAAGGCTGCCAAGACTGCATAAAGTTGGCGAGTtataagaaataaaaataaaaaaatggtttGAGAAACACTACCCTGTCAGTCTTCAATCTTTGGGTCGTAAGAATAAAGAGCAATGCCTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177852 lncRNA upstream 2277 51410337 ~ 51410863 (+) True G155491
TU177850 lncRNA upstream 12926 51387977 ~ 51400214 (+) True G155489
TU177876 lncRNA upstream 57674 51350626 ~ 51355466 (+) True G155515
TU177208 lncRNA upstream 113286 51294802 ~ 51299854 (+) True G154901
TU177111 lncRNA upstream 265243 51145536 ~ 51147897 (+) True G154817
TU177853 lncRNA downstream 13712 51430866 ~ 51501997 (+) True G155492
TU178228 lncRNA downstream 175688 51592842 ~ 51593164 (+) True G155845
TU178329 lncRNA downstream 310367 51727521 ~ 51835110 (+) True G155940
TU178392 lncRNA downstream 399356 51816510 ~ 51820246 (+) False G156000
TU178396 lncRNA downstream 399419 51816573 ~ 51820246 (+) True G156000
XM_036950266.1 mRNA upstream 7525 51375324 ~ 51405615 (+) False LOC110491314
XM_036950263.1 mRNA upstream 7526 51375326 ~ 51405614 (+) False LOC110491314
XM_021564680.2 mRNA upstream 9468 51375334 ~ 51403672 (+) True LOC110491314
XM_036950262.1 mRNA upstream 73603 51317121 ~ 51339537 (+) False LOC110501653
XM_036950260.1 mRNA upstream 73603 51317124 ~ 51339537 (+) False LOC110501653
LOC118944199 mRNA downstream 4702 51421856 ~ 51422029 (+) True LOC118944199
XR_005039449.1 mRNA downstream 5183 51422337 ~ 51422453 (+) True LOC118944142
LOC118944140 mRNA downstream 12300 51429454 ~ 51429572 (+) True LOC118944140
XM_021564725.2 mRNA downstream 1486037 52903191 ~ 53018812 (+) True cspg4
XM_021564755.2 mRNA downstream 1716343 53133497 ~ 53167781 (+) False snupn
TU177860 other upstream 90707 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 245966 51165415 ~ 51167174 (+) True G154859
TU176287 other upstream 1312666 50098416 ~ 50100474 (+) True LOC110491026
TU174225 other upstream 2855454 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 3865561 47497948 ~ 47547579 (+) True G150997
TU177903 other downstream 3693 51420847 ~ 51421122 (+) True G155541
TU178397 other downstream 399356 51816510 ~ 51824182 (+) False G156000
TU181296 other downstream 2604454 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 2935829 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 3311142 54728296 ~ 54728860 (+) True G159889

Expression Profile