RNA id: XR_005037027.1


Basic Information

Item Value
RNA id XR_005037027.1
length 1308
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118940482
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53182598 ~ 53188868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAAACAACGTAATACACAGGTGAAAAGTGTGATGAAAGGGGCAATAAGAGAAAAAACACAAAGTAAAACCCCACTAGCATGTGAATGAGGAAATAAGTAAAAaagaaacataaaaaaaacagtaAATTACTCATCACCCTAATGTGTGAATAAGAAAAGCACACAACGTCGTTTTTTGGGGTGAGACGGAGGGCACTGATCGATGTTCCTGTGAAAGTACATTGTCATGTCCCTGACTAACGGGACACATTGATCAACAGCAAAATACACCATACATGACTGCTGATGTTTCTGTAACTCCTGCTGACTTTTCTTTGTTTCATCCACCCGCTGCATAATGTCAGTGTCCAAAGGATCCTTAGCCGTCTTCCTCTTACGGCCAATGGAGCTGGGTCAGGGCGATGGGGCCGATGTTGATGGAGCTGCAGGGCAGAGAGCACCTGGACGATGAAATCCTGTGACTAGTGAGGTCCGGCCGCCCAACAACTTGCACGCTCGACCCGATCCTCTCCTCGAGACCAACTCTGGAGAACTACCATGcatcacttccctcatcaacttatccctgaccactggctggtTCCCCACTGACTTCAAAATATCCAGACCGatctatccgctgccttCAATATCGTGAaacatcagatcctcctctccaccctgtcagggctgggcatctcaggctttgcacacctggattgcatCCTATATGACAGGCCACTCCTACCAGGTGGCGACACACATCTCTGTATGCCTGGCAGATACTGTATCTccgcttggatgtcggcccaccacctcaagctcaacttCGAAAAGACCGAACGTCTCCTCCTCCCAGGCCTTCCCACTCCAAAACCTTACCATCACTGTTGACAACTCTACGGTCTCCCCCTACCatagtgcaaagaaccttggcatgaccctggacaacaccatgtCATTCTCTGCAACATCTGTAGAgtatgaccctacctcacacaggaagtggcgcaGGTCTTAATCCATGCACTTGTCATCTACCATCTGGACTTCTggaactcgctgttggctgggcttcccgcttgtgccatcaaacctctgcaacttatccagaatgctgcagcccgcctggtgttcaattttcccaagttctcccatgtcaccagCTCCCcccacacactccactggcttacAGTCGAAGCTTGTATCCACTACAAGACAATGGtacttgcctacggagcagcaagaggatctgcccctccctaccttcaggctatgctcaaatcctacaccccaacccgagcactctgttctgccacctctggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180516 lncRNA downstream 11358 53170972 ~ 53171240 (-) True G158057
TU180505 lncRNA downstream 17362 53159338 ~ 53165236 (-) True G158048
TU180433 lncRNA downstream 66103 53116259 ~ 53116495 (-) True G157979
TU180348 lncRNA downstream 183931 52997999 ~ 52998667 (-) True G157898
TU180361 lncRNA downstream 186372 52995944 ~ 52996226 (-) True G157911
TU180797 lncRNA upstream 56865 53245733 ~ 53246513 (-) True G158306
TU180801 lncRNA upstream 63989 53252857 ~ 53269371 (-) True G158308
TU180892 lncRNA upstream 207794 53396662 ~ 53396931 (-) True G158393
TU180782 lncRNA upstream 250047 53438915 ~ 53439271 (-) True G158291
TU180899 lncRNA upstream 255173 53444041 ~ 53445912 (-) True G158400
XM_021564736.2 mRNA downstream 70051 53073293 ~ 53112547 (-) False snx33
XR_005034526.1 mRNA downstream 402139 52779596 ~ 52780459 (-) True LOC118937283
XM_021564711.2 mRNA downstream 1093051 51822291 ~ 52089547 (-) True lingo1a
XM_021564707.2 mRNA downstream 1306589 51822291 ~ 51876009 (-) False lingo1a
XM_021564629.2 mRNA downstream 1953269 51180770 ~ 51229329 (-) True LOC110491276
XM_021564834.2 mRNA upstream 123153 53312021 ~ 53343562 (-) True crabp1a
XM_021564848.2 mRNA upstream 184364 53373232 ~ 53396107 (-) False slc25a44a
XM_036950373.1 mRNA upstream 184364 53373232 ~ 53396108 (-) True slc25a44a
XM_036950407.1 mRNA upstream 279404 53468272 ~ 53490405 (-) True oaz2a
XM_021565100.2 mRNA upstream 634904 53823772 ~ 53851668 (-) False sv2
TU180370 other downstream 70307 53032902 ~ 53112291 (-) True snx33
TU177982 other downstream 1765488 51412269 ~ 51417110 (-) False G155610
TU177680 other downstream 2132718 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other downstream 2132718 51039870 ~ 51049880 (-) True LOC110491241
TU177629 other downstream 2210663 50971076 ~ 50971935 (-) True G155281
TU181650 other upstream 667818 53856686 ~ 53857552 (-) True G159120
TU181691 other upstream 780575 53969443 ~ 53971339 (-) False cd59
TU181692 other upstream 780575 53969443 ~ 53971339 (-) True cd59
TU181798 other upstream 1068558 54257426 ~ 54268353 (-) True ambra1b
TU182463 other upstream 1539431 54728299 ~ 54728860 (-) True G159890

Expression Profile