RNA id: XM_021564780.2


Basic Information

Item Value
RNA id XM_021564780.2
length 3950
RNA type mRNA
GC content 0.47
exon number 13
gene id ptpn9a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53205081 ~ 53249227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTAGCATTAGCTAGCCTAGAATGCATTGCTGAAGATAATTTGAAGTTTTAATTAAAATCTAGCAGTATTTAATTGTTCTCAAGGTATAATTAGGAGTACAGCGCCCTCTCCCATCCCTGGATTCAGGCTACAAAGGAGTTTCTGGAGGAAATCAACAAGTGGACCACTCAGCATGGAGTGTCCCCCCTGTCCTGGGAAGTGGCCGTCAAGTTCCTCATGGCGCGCAAGTTCGACGTGCTCCGGGCCATCGAGCTCTTCCACAGCTacaggGAGACCCGTCTGAAAGAGGGCATTGTCAAACTacagccccaggaggaacctctGCGCTCAGAACTGCTCAGTGGAAAGTTCACTGTGCTGAGTGTGCGAGACCCATCAGGTGCCTCCATAGCCTTGTACACGGCCAAACTCCACCACCCCAACAAGACAGGCAACCATGTTGTCCTGCAAGCTCTTTTCTACCTCCTGGACCAGGCTGTGGAGAGctTTGAAACTCAAAGAAACGGCCTGGTGTTCATTTACGACATGGCGGGCTCCAACTACACCAACTTTGAGCTGGACCTGAGCAAGAAGATCCTCAACTTACTCAAGGGGGCGTTCCCTGCCAGGCTGAAGAAAGTGTTGATAGTGGGTGCCCCTGTCTGGTTCCGCGTGCCCTACAACCTGCTGAGCCTGCTGCTTAAGGAGAAACTCAGGGAGAGGgtcCAGATGGTCAGAATGTCTGACCTATGCCAGCACCTCCCACGGGACTGTCTCCCTGAGCACCTGGGGGGGCTGCTGCCCCTGGATGCCCACGGCTGGAACCAGCAGCTTCTGGCTGGGCAGAACGGCCGTGTGGACCCCGTGGATGAGCTGGTTGGCATCCCCCTGGAGGACTCGTCGGTCCACAACCCTGGGCCTGAGGCCATGCGTCTGCCTGAGTTCATGGCCCACCTGGGCAGGCTCCAGCGCTCAGGCATCCACCTGGAGTATGAGGAAATCCGCAAGGAGCAACCACCTGGGACATTCCATTGTGCCCTTACTGCATACAACCAGGAGAGGAATCGCTATGGGGATGTCCTGTGTCTTGACCAAACAAGAGTTCACCTGAAAACCAGAAGAAACGAGAGATCAGATTACATCAATGCCAGCTTCATGGACGGCTACAAACAGAAGAATGCGTACATCGGTACTCAAGgaccactggAGAAAACCTATGGGGATTTCTGGAGGATGGTCTGGGAGCAAAACGTGCTAGTCATTGTCATGACAACAAGAGCGGACGAGGGAGGTCGGAAGAAGTGTGGTCAGTACTGGCCTCTAGAGGAAGGCGGCCAGGAGGTGTATGGTCACATGGCTGTGGTCAACCAGAGGGTGGACAATCACTCCCACTACAACCAGACCACCCTGGAGCTGCACAACATGGAGaattGTGAGCAGAGGCAGGTGACCCACTTCCAGTACCTGAGCTGGCCCGACTACGGCGTCCCCACCTCGGCCGTGACACTCATTGACTTTCTGGGGGCTGTCAAGAGGCAGCAGAGGCGGTCAGTGAAGACCATGGGGCCCCAGTGGAGGGGCCACCCCTTGGGACCCCCCATGGTGGTTCACTGCAGTGCTGGCATCGGCAGAACAGgtaCCTTCTGTGCCCTGGACATCTGTCTGTCCCAGCTGCAGGATGTGGGGACGCTCAACGTGTGTCAGACGGTGCGGCGGATGAGAACGCAGAGGGCCTTCACCATCCAGACCCCAGACCAGTACTACTTCTGCCACAACGCCATCCTGGAGCACGCTCAGAGACAGGGCCTGCTCTCAGCCAATCAGTGATGCCTGGGGGTCGCCTCATAGTTCTCACGGCCAATCTGTGATGCCCTGGATGTTGTCGTAGCCTATCAGTGACCCTTCTCGCAGCCAATCTGTGAATCCAGGGGACACTTTGTAGCCAATCAGCATGCCCACTTCTAGCAAATGCCATCACTTCTTCCCTTTTTAAGAGGCCTTTAAGACCAACTCATTCCTCCTTCTGACTCTGCCACTTCTGACAGAGCCACAGTTGTGATGAAAAATGTTAGATAGTAAGACATAATAACATACAAGACACAGCAACCTGGCAACAAATGTTGTCAGTTTTGTGTCTTCTGAGGAAGATTTTGAATCATTATGTGACCGTTATCTGTGTCTATGCGAGTCTGTCGTTAGTGTTGTGACGCACATCATTCGCTTTGGTGTCTTGTGTGATCCAGATACTTAGCAGTAACCGATGACATGAACTTTGCGTTCAACTTCCTTTTTTAAGAACCTATCACATCTGTGACCAGTTCAGTGGTCTTTGAGAAGGctttttctcttgctctctccctctctccatcctctacctgtgaaagcagagaagaatggtattggagaagaaagtaagaaTAGTTTTTTTTCAATGGTCTTTTGCCTCTTGGTATTGTCGTTGTGACCTTAGCGATACAACTATACTTGGCATACAAGCATTGAACCCCTCCTgggatgaccccccccccccccccccccaacttccCCTGGGCCATTGAATCGAATGGCTACATGTAGAAGTTGCCCCTGAGATGCATGTGGACTTCTCATCTTACCCTACCCCCAATCCAAGCCTCAACCATTGAGAGTTAAAATGCATAGATGACCTTAAATTCAACTTTAAGTAATACTAAACACATTAATGTTTTTGTGAGCAGCTGATAAAGTTGGTATCTCAATGCATTTCCTACAGATCTAATAATTAAGAGCTGGCCTCCTGACAACACATGAACCATCTGCCTTCACTCTGTTATTGTAAGTCATTCACATTGGCTGTTCAAACGTTCCTTGTGAAAATCTTGTAGTGATCGTGACATTAAATGTTTGGTCGCCGCTGCTTTCACTCAGTAGTTGTTCCGTATGCTTCAGTTGTGTCATGTACGTCTATTGAGCCTCCTATGCTGCGATGGACCTGGTGTAGGAAGGCCATAACCCTGCTTCCGCTTTAAGACACCAGTCCTAGACCTCACCTCAGTAAAGTGCAATAGACTTTTATACACAGCCATGTTGAAGCACTTTGTGCTTTTAGAGATTACAGTTCTTGTGTTGGTAAAGTGCATTTAAGGTGAAATTACAATTGTAGGAGATTGTATACGTGTGatatacggtgccttcagaaagtattcacacttatttacttattccacattttgttacagcctgaattaaatattttttttttctcacccatctacacacaatacctcataatgacaaagtgaaaaccatgttttgttttttttattacattttattgaaaattaaatacagaaatcgaatgtacataagtattcacacccctgagtcaatactttgtagaagcatctttggcagtgattacagctttaTGTTTTCTTGGGTAAGTTtaagagctttgtacacctggattttacaatcttggtaagcaactccagtgtagatttggccttatgttttaggtaattgtcttgctgaaaggtgaatttgtctaccAGTGTCCTTTGGAAAGCAGagtgaaccaggtttttctctaggatttttttatttgcttatagctgtattctgtttctttttagcTTAAACtcccttgccaatgacaagcatacccataacatgatgcagccaccaccatgctagaaaatatgaagtggtactcattgatgttggattttccccaaacacaaAGTTTTGTATTCAGGgaaaaagtgaatttctttgccacattactttaagtgccttgttgcaaacaatgTACATGTTTTGGAATTTGCGTATCCTGTACGGGCTTCCTATTCACTCTGTCATTAGGTTAgtattgggaaagggggatacctagtcagttgtacaactgaaatgtgtcttcattgtggagtaactacaatgttccATTCTCATATTACAACCATTAAATTCTAACTGTTTTAAAACCA

Function

GO: NA

KEGG:

id description
K18038 PTPN9, MEG2; tyrosine-protein phosphatase non-receptor type 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180440 lncRNA upstream 76865 53121169 ~ 53129021 (+) True G157986
TU180171 lncRNA upstream 112789 53092833 ~ 53093097 (+) True G157726
TU179938 lncRNA upstream 420301 52742500 ~ 52785585 (+) True G157500
TU179937 lncRNA upstream 464126 52741544 ~ 52741760 (+) True G157499
TU179933 lncRNA upstream 466464 52739081 ~ 52739422 (+) True G157495
TU180572 lncRNA downstream 62797 53312024 ~ 53343526 (+) True G158109
TU180645 lncRNA downstream 141023 53390250 ~ 53391247 (+) True G158167
TU180660 lncRNA downstream 163293 53412520 ~ 53412744 (+) True G158182
TU180670 lncRNA downstream 194817 53444044 ~ 53445745 (+) True psma4
TU180691 lncRNA downstream 247630 53496857 ~ 53497265 (+) True G158212
XM_021564755.2 mRNA upstream 38105 53133497 ~ 53167781 (+) False snupn
XM_021564748.2 mRNA upstream 38105 53133713 ~ 53167781 (+) True snupn
XM_021564725.2 mRNA upstream 187074 52903191 ~ 53018812 (+) True cspg4
LOC118944140 mRNA upstream 1776314 51429454 ~ 51429572 (+) True LOC118944140
XR_005039449.1 mRNA upstream 1783433 51422337 ~ 51422453 (+) True LOC118944142
XM_021564800.2 mRNA downstream 3581 53252808 ~ 53285424 (+) False sin3aa
XM_021564822.2 mRNA downstream 3628 53252855 ~ 53285424 (+) False sin3aa
XM_021564791.2 mRNA downstream 17959 53267186 ~ 53285424 (+) False sin3aa
XM_021564807.2 mRNA downstream 17959 53267186 ~ 53285424 (+) False sin3aa
XM_021564815.2 mRNA downstream 17959 53267186 ~ 53285424 (+) False sin3aa
TU178397 other upstream 1381704 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 1784764 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 1788768 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 1883453 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2038712 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 772381 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 1103756 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 1479069 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2696916 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2995817 56245044 ~ 56252598 (+) True G161687

Expression Profile