RNA id: XM_021564800.2


Basic Information

Item Value
RNA id XM_021564800.2
length 5474
RNA type mRNA
GC content 0.51
exon number 21
gene id sin3aa
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53252808 ~ 53285424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAGGGGGGGGCGTTTCCAACTATTTTGTTACAAACACGAATCCGGAGTGAGAAGACCATTTTTCCTAGGTCTTTCAGCCCCCTCGAGCATGAGTTCAAAATGAAACGGCGCTTGGAGGAACAGGAACCGGTATTTGCGTCCCAACAGCGGCGCCTCACCTGCAGCACGGAGGCTTTCCAGCACCGTGTCCTGGCCCCTGCGCCTGCCGCATACGAGGCCGTGGGCGATAGCATGCAGCCTACCGCAGGCAACATTCAGTATTCTGTCCCACAGGGCTACCAGGTCCCCATGGTGCCACAGAACTCGAGTGGTCATGTGCACACCCCTAGCCCAACTGTACACCACCACAGCCCAGCGGTCCAGCCCCACGGGCCCCCTGTGATGCAGTGCCACGCTCACCCCCCTGCCTCAGCCCAGGGCCAGCAGCAATTCCAGAGGCTCAAGGTGGAAGATGCTTTGTCTTACCTGGATCAAGTGAAACTCCAGTTTGGCAACCAACCTCAAGTCTACAATGACTTCCTGGACATCATGAAGGAGTTCAAGTCTCAAAGCATTGACACTCCAGGGGTGATAAGCAGGGTATCCCAGCTCTTCAAAGGCCACCCCGACCTCATTATGGGATTCAACACCTTCCTGCCCCCGGGCTACAAGATCGAGGTTGCGACCAACGACCTGGTCAATGTAACCACGCCGGGTCAGATCCACCACATCACCCCTCACGGCATTTCTGTCTCACAAATCCCCCTGTCGGGACCACCCACCCCGCACCAGCCCCAGGTGCCAGCCCCCACCACCTCTGCACCACCCCCTCCCACACAGCCAACCCCTACCAAGATGAGCAAGCAGCCACTGCAATCTCCAGTCCTCACGCCAAGCAGCCAGCCCAATCCGTCCATCCCCGCCTATGCCTCCCCCCAATCCCCAACCCTGCAGCCCCACACACCGATCAGTGGCACGCCCAATGCCCCTCCGCTGCAGAACAACCAGCCTGTGGAGTTCAATCATGCCATCAACTACGTCAACAAGATCAAGAACCGTTTCCAGGGTCAGCCGGACATCTACAAAGCCTTCCTGGAGATCCTGCACACCTACCAGAAGGAGCAGCGGAATGCTAAGGAGGCAGGAGGGAACTACACCCCAGCCCTGACAGAGCAGGAGGTCTATGCCCAGGTGGCCCAGCTCTTCAAGAACCAGGAGGACCTTCTCTCTGAGTTTGGCCAGTTCTTACCAGATGCCAACAGCTCGGTGCTATTAAGCAAGACGACAGCAGAAAAGGCGGAGTCTGTGCGGAATGACCACGGTGGCACAGCGAAGAAGCTGCAGCTCAACAACAAACAGAGGCCCAATCAGAACGGTTGCCAGATCCGCATGCTCTCTGGGACGGTTGCCACACCCCCTGTCAAGAAGAAGCCCAAGTTACTGAATTTGAAAGACTCGTCCCTGGTAGAAGCCAGCAAACATGGAGATGGCACAGAATCTCTGTTCTTTGAGAAGgtGCGGAAGGCCTTGCGGAGTGCAGAGGCCTATGACAACTTCCTGCGTTGTTTGGTTATCTTCAACCAAGAGGTCATCTCCAGGGCTGAGCTGGTGCAACTGGTGCTGCCTTTCCTGGGGAGATTCCCCGAACTGTTCAATTGGTTCAAGAACTTCCTAGGATACCGGGAAATTTCCCACACTGAGCGCTATCCCAAGGAGCGTGCCTTGGAGGGCATTGCCATGGAGATCGACTATGCTTCCTGCAAGAGACTGGGCTCGAGTTACAGAGCACTGCCGAAGAGCTACACGCAGCCCAAGTGCACCGGGAGAACGCCACTGTGCAAAGAGGTCCTCAATGACACCTGGGTGTCCTTCCCTTCCTGGTCTGAAGACTCCACCTTTGTGAGCTCCAAAAAGACCCAGTATGAGGAGCACATCTACAGATGTGAGGATGAACGCTTCGAGCTGGACGTGGTGCTGGAGACCAACCTGGCCACCGTCCGCATGCTGGAGACCGTACAAAGAAAACTGTCGCGTATGTCTGCCGAGGAGCAGGCTAAGTTCCGCCTGGACAACACGCTGGGAGGCTCCTCGGAAGTCATCCATCGCAAGGCCATCCAGAGGATATACGGTGAAAAGGCCCCTGACATCATCGATGGGCTCAAGAAGAACCCTGCCATTTCTGTTCCCATTGTGCTGAAGAGGTTAAAGACCAAGGAGGAGGAGTGGCGGGAAGCCCAGAGGGGCTTCAACAAGATCTGGAGGGAGCAGAATGAGAAGTACTACTTGAAGTCTCTCGATCACCAAGGTATCAACTTCAAACAGAACGACACCAAGGTGCTACGATCCAAGACActgctcaatgagattgagagCATCTACGACGAGCGACAGGAACAGGCGTCGGAGGAGAACACCGCGATGCCCAGCGGCCCCCACCTGACTTTGACCTACAAGGACAGCCAGATCCTGGAGGATGCTGCCGCCCTCATCATCCACCACGTCAAGCGGCAGACGGGCATCCAGAAGGAGGATAAGTACAAGATCAAACAAATCATTCACCACTTGATCCCAGACATGCTGTTCGCCCAGCGCGGCGAGCTCTCGGAcctggaggaagaagaggaagaggagctgGATGAGGCCGTGGCTAAGAAGCACAATGGCGTCACGCAAGGCGGAAGCCCCAACAAGTCCTCCAAGCTCCTCTTCTGCAACACGGGTGCTCAGAAGCTGAGAAGTTGCACCGAGGCCTACAATCTATTTTACGTCAACAATAACTGGTACATCTTCCTGCGGCTGCACCAGACACTGTGCTCGCGGCTGATGCGGATCTACGGGCAGGCGGAGAGACAAATTGAGGAGGACATCCGGGAGcgtgactgggagagagaggtgcTGGGCCTCAAGCGAGACAAGAATGACAACCCTGCCATCCAGCTGAGACTGAAAGAGCCCATGGATATAGAGGTGGAGGACTACTACTCTGCCTTCCTGGAGATGGTGCGGAACCTTCTGGATGGCAACATGGAGCCGGCTCAGTACGAGGACTCCCTCCGGGAGATGTTCACCATCCATGCCTACACCGCCTTCACCATGGACAAACTCATCCAGAGCATTGTCAGGCAGCTCCAGCACATAGTGAGTGACGAGATCTGCGTGCAGGTGACAGACCTGTACTTAGCAGAGGGCACCAACGGGGCCACCGGAGGTCCCCTTCCCACCCAGACATCCAGAGCTTCCGTAGAGGGATGCTACCAGCGCAAGGCGGAACAGATCATGTCCGATGAGAATTGCTTCAAGCTTATGTTTCTAAAGAACAGAGGCCATGTTCAACTGACAGTGGAGCTTCTGGACACCGAGGAGGAGAACTCCGATGAACCCATGGAGGCAGAGCGCTGGTCAGATTACGTGGGTCGCTACCTGAATTCTGACTCTACCTCTCCAGAGTTGCGGGAACACCTTGCTCAGAAACCTGTCTTCCTTCCCAGGAACCTCCGTCGGATACGGAAGTACCAAAGGGGTAGGGAGCAGCTAGAGAAGGAGGCcagcgagggagagaaaaagtCCACAGAGAATGCTGAGAACCTTAAAATGGAATGTATGTTCAAGCTCAACTCCTACAAGATGGTTTATGTCTTCAAGTCTGAGGACTACATGTACCGACGCACTGCTTTGCTGCGAGCTCACCAGTCACACGAGAGAGTGAGCACTCGGTTGCACAAGCGCTTCCAGGCCTGGGTCGACTCCTGGGTGAAGGAGCATGTCACTCGCGACATGGCCGCTGAGACCAACAAGTGGCTGATGGGAGAGGGGCGTGACGGCCTGGTGCCGTGCACCACCACCCGCGAGCTGGAGATCCTCCACTTCATGAACATCAACAAGTACCGTGTCAAATACGGCTCACCCTTCAAAGCACCATAACCCACCAGGATTGGAAGGGGGGTTTGGGATTATATACTAGGATGGGTCAGGaatgggtgaggaggagagggcatATCAACAACTTTCTAAGGCTGATATGGGAGCACAACACACAACTAGGTCTTACCGGGGGCGACTGGATCACTGTTTTTAACCAGCGGTTTTAGCTGTCCACACTTTTGCAGGGCCTTCGGTGCCAAGATGTAGGGAGTTGTTCTGTTGGTTGAAATCTAGCCACAGTCACTGACCTGAGCTCTTACCAGCAGACCAAACCACATCACAAATCATGGTCTTCGAGGGCTTTAAAAAAAGGCCTTTGGGACTTGCCCTGTGTGCTCCCTAGAGGTGCCTGCTAGGTTACAGCCTCACTTGCGCTCAGTCAGTAGGCTGGGGTTTGGTTGTTTGTTATTGACAGACATAGTAATATATGAAGCCATCAGAATAAGGATTCTGTTGACGGTGCAACTGCGGTATCCGTGGAAAATAGTTTTGGGGGATAAGTGCACTTAACTATGAATTGGATGGGGTTGAGTTTGCGTTGCCACGGTTTCAAGGGTGCATGGAGCTCAAAGCGGACTTTAGTTGAAACGATCTGGCACAGCCACGTCCCTGTGCTGGGAACAAATCACAATAACACATCACTTCAAAACGAGAACATGATGTTTCTTATTGTTCACCTTTCCTTTTCAAACACACGGGTGCATTAAGAGAACGAGGCCCGAGTCCCAAGCAGCGTTGTGGGGTGAAAAGCACTGTTGTGTTTCATGTAAAAAGACAAGTAGATTAGCCACACAACTCTGCTGTGTCTGACTGTAAAATTGTATAGCTTGTGAATGTCAGATTATgaaatgtattgtgtgtgtgtgtatatatttattataagTATATAAACACAACTAATCCTGGCCAACCCTGATATTCAACCTTTTGAAGTTGCTGGCAATGCCCTACTACGCCAATACACCAGCTTGTACACATGAACCGAGATCATTATGGATGGACTATCCACACACTGTAAATAAACTGTACATAGTGTCAGACCTTTTTTATGACTAAGAACTGCGTTGTTGTGCTAGTAATACTTTCTAAGCTTACTGTGGACTTTAGTGAGAGGCTGAAGTTAGTACGtatatgaaaaataaaaatgcaaGACAGTTTTTACCAAAGGGAGTTGATTATGATAGTAGTTTTTTGTTTTTCCTtactgtgttttttgttgttgtttgtagtTAGAAATGTTCATTTGAAAAGTAGAAATGTATCCAggtctttgtttttgaaatggAAGTTTTATAAAATCTTAAATTTTTTTGAAGTTTGATTTTGGCTTTCATTTCAGTCTATCACTGCCCATGTGGATATGCTGAACAAACTCTCAATGGAGTGGAGCTGGGCTATTAGCGGAtggcctgtatccacaaagcatctcagaaaaGGTCCTAGGAATCCTGTTTTAAAACCTGTTTTAAGCCAATCTCTATCAAATCGTTTCTGGATAATAATTAAGTACCttattgtgattgttttcaattaaaatggtcaaaaataataaaatagcttcttagcaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180440 lncRNA upstream 123787 53121169 ~ 53129021 (+) True G157986
TU180171 lncRNA upstream 159711 53092833 ~ 53093097 (+) True G157726
TU179938 lncRNA upstream 467223 52742500 ~ 52785585 (+) True G157500
TU179937 lncRNA upstream 511048 52741544 ~ 52741760 (+) True G157499
TU179933 lncRNA upstream 513386 52739081 ~ 52739422 (+) True G157495
TU180572 lncRNA downstream 26600 53312024 ~ 53343526 (+) True G158109
TU180645 lncRNA downstream 104826 53390250 ~ 53391247 (+) True G158167
TU180660 lncRNA downstream 127096 53412520 ~ 53412744 (+) True G158182
TU180670 lncRNA downstream 158620 53444044 ~ 53445745 (+) True psma4
TU180691 lncRNA downstream 211433 53496857 ~ 53497265 (+) True G158212
XM_021564770.2 mRNA upstream 3581 53205081 ~ 53249227 (+) False ptpn9a
XM_021564780.2 mRNA upstream 3581 53205886 ~ 53249227 (+) True ptpn9a
XM_021564755.2 mRNA upstream 85027 53133497 ~ 53167781 (+) False snupn
XM_021564748.2 mRNA upstream 85027 53133713 ~ 53167781 (+) True snupn
XM_021564725.2 mRNA upstream 233996 52903191 ~ 53018812 (+) True cspg4
XM_021564860.2 mRNA downstream 65676 53351100 ~ 53370380 (+) True wdr61
XM_021564872.2 mRNA downstream 130689 53416113 ~ 53438769 (+) False ireb2
XM_021564878.2 mRNA downstream 132367 53417791 ~ 53438769 (+) True ireb2
XM_021564892.2 mRNA downstream 158624 53444048 ~ 53466316 (+) False psma4
XM_021564901.2 mRNA downstream 164226 53449650 ~ 53466316 (+) False psma4
TU178397 other upstream 1428626 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 1831686 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 1835690 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 1930375 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2085634 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 736184 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 1067559 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 1442872 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2660719 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2959620 56245044 ~ 56252598 (+) True G161687

Expression Profile