RNA id: XM_021564834.2


Basic Information

Item Value
RNA id XM_021564834.2
length 1080
RNA type mRNA
GC content 0.47
exon number 4
gene id crabp1a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53312021 ~ 53343562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAAGGTCAAAActgacactagagagagagagagtcagagagtgaGACGACAACTGAGATAGAGGGAGCAAAAAGCAGACAGTAAGAAAAAGGTGTGTATATGAAGAATAGAGACACTTGCTTTATCTCGTGGCAAAGAGGAAGTTGAAGCTGCTACAGAAAGGGAgatacagaaaggagagagaggaagattgagagaggcagaggttgtgagtggagaagagagtgcaaagcagaggaaaggaggagagtgagagagagagggtataggaAGCACAGAGAGTGGAGCAGGTTCTTTGCAGGCACAGCCTTTACTGTCAGCCCCAGCAGAAATGCCCAACTTTGCCGGTACCTGGAAAATGAAGAGCAGTGAGAATTTTGACGAACTTCTCAAAGCCCTCGGCGTGAATGCCATGCTGAGGAAGGTGGCTGGGGCTGCTGCCTCCAAGCCTCACGTGGAGATCCGTCAGGACGGGGAGCAGTTCTACATCAAGACATCCACCACCGTCCGCACCACCGAGATCAACTTCCACATCGGCCAGGAGTTCGACGAGGAGACGGTGGACGGCAGGAAATGCAAGAGTCTTGCAATCTGGGAGACGGAGAACAAGATGGTGTGCAAGCAGACTCTGGTGGATGGAGATGGGCCCAAGACATACTGGACAAGAGAACTGCGAGGAGATGAGCTGATTCTGACGTTCGGGGCTGACGACGTGGTGTGCACACGGATTTACTTACGAGAGTGAAGCTTCAACAAGGCCAACCTGGACACgacagaaaatacagaaaataaaaCCAGTCAGATATGTTACAACActccttaaccccccccccattTCCCTGCCATGCTGAAAAATCAATATATAGTATATCCTACGTAATTCAGCAGCATCTGCTGCATAGTCtacataaaacataaaacaacatTTGTGTAATATGGTAATTTGTGGTGTGGTAATGTGTGTTACAGTTCTGCTATAAATGCGCTTCTCAGTGTTTGATCCATATCTACAACCACTACCTTCTTTGTTGAGTTTGTCAATATTGCAAACAGGAATAAAAATGGGATTAAAAAAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17337 CRABP1; cellular retinoic acid-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180801 lncRNA downstream 42650 53252857 ~ 53269371 (-) True G158308
TU180723 lncRNA downstream 47897 53175406 ~ 53264124 (-) True G158241
TU180797 lncRNA downstream 65508 53245733 ~ 53246513 (-) True G158306
TU180516 lncRNA downstream 140781 53170972 ~ 53171240 (-) True G158057
TU180505 lncRNA downstream 146785 53159338 ~ 53165236 (-) True G158048
TU180892 lncRNA upstream 53100 53396662 ~ 53396931 (-) True G158393
TU180782 lncRNA upstream 95353 53438915 ~ 53439271 (-) True G158291
TU180899 lncRNA upstream 100479 53444041 ~ 53445912 (-) True G158400
TU180929 lncRNA upstream 104097 53447659 ~ 53447864 (-) True G158430
TU180930 lncRNA upstream 105052 53448614 ~ 53448813 (-) True G158431
XR_005037027.1 mRNA downstream 123153 53182598 ~ 53188868 (-) True LOC118940482
XR_005037026.1 mRNA downstream 126220 53182598 ~ 53185801 (-) False LOC118940482
XM_021564736.2 mRNA downstream 199474 53073293 ~ 53112547 (-) False snx33
XR_005034526.1 mRNA downstream 531562 52779596 ~ 52780459 (-) True LOC118937283
XM_021564711.2 mRNA downstream 1222474 51822291 ~ 52089547 (-) True lingo1a
XM_021564848.2 mRNA upstream 29670 53373232 ~ 53396107 (-) False slc25a44a
XM_036950373.1 mRNA upstream 29670 53373232 ~ 53396108 (-) True slc25a44a
XM_036950407.1 mRNA upstream 124710 53468272 ~ 53490405 (-) True oaz2a
XM_021565100.2 mRNA upstream 480210 53823772 ~ 53851668 (-) False sv2
XM_021565090.2 mRNA upstream 490461 53834023 ~ 53851668 (-) True sv2
TU180370 other downstream 199730 53032902 ~ 53112291 (-) True snx33
TU177982 other downstream 1894911 51412269 ~ 51417110 (-) False G155610
TU177680 other downstream 2262141 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other downstream 2262141 51039870 ~ 51049880 (-) True LOC110491241
TU177629 other downstream 2340086 50971076 ~ 50971935 (-) True G155281
TU181650 other upstream 513124 53856686 ~ 53857552 (-) True G159120
TU181691 other upstream 625881 53969443 ~ 53971339 (-) False cd59
TU181692 other upstream 625881 53969443 ~ 53971339 (-) True cd59
TU181798 other upstream 913864 54257426 ~ 54268353 (-) True ambra1b
TU182463 other upstream 1384737 54728299 ~ 54728860 (-) True G159890

Expression Profile