RNA id: XM_021564860.2


Basic Information

Item Value
RNA id XM_021564860.2
length 1517
RNA type mRNA
GC content 0.49
exon number 11
gene id wdr61
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53351100 ~ 53370380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggcccacactccagtacagtacgtggcggtaatgcaccataacgTTGGATACCAACCGCCGATAAACCCGACCGAAGAAGAAGAACAGCGCTTCGAAGTTGGCTGCTTCGCGATTTCGACGCTTGCCTTGGTGCTCCAGTATCAAACGACGTAAAACTACTTGCAAGATTTAACGAACAACCATGAGCACTCAATACAGTATTCTGTTCAAGCAAGAACATGCCCACGACGATGCCATCTGGACTGCTGCGTGGGGTAGAAGTGAGCGGGATGGATTGGAGACAATAGTCACTGGCTCTCTGGACGACATGGTGAAAGTCTGGAAATGGTCAGACGAAAAGCTGGAGCTGCAGTGGACCCTGGAGGGCCACCAGCTGGGTATAGTCTCAGTGGACGTCAGTCCCAACGGAGCCATAGCAGCCTCCAGCTCGCTGGATGCCCACATACGCCTCTGGGACCTTGAGTTCGGCAAGCAGATCAAATCCATGGATGCAGGCCCAGTTGATGCATGGACAGTAGCCTTCTCCCCAGACTCCAAATACATTGCCACAGGAAGCCATCTTGGAAAGGTCAACATCTTTGGGGTTGAAAGCGGCAAGAAGGAGTACTCTTTGGACACCAGAGGGAAATTCATTCTGAGTATAGCCTACAGTCCAGATGGAAAGTACTTGGCCAGTGGAGCTATAGATGGAATCATTAACATCTTTGACATTGCCACTGGGAAACTACTCCATACGCTGGAAGGTCACGCCATGCCTATCAGATCGCTGACGTTCTCTccagactcacagctcttagtcACAGCCTCAGATGATGGCTACATCAAGATTTATGACGTGCAGCATGCCAAGTTGGCAGGCACTCTGAGTGGCCACGCGTCCTGGGTCCTCAACGTAGCTTTCTCCCCTGACGACACGCATTTTGTATCCAGTTCCTCAGACAAGAGTGTGAAGGTTTGGGACGCCAGCTCTAGGGCATGTGTCAACACATTTTTCGACCATCAGGACCAGgtgtggAGTGTGAAATACAACGGCACAGGTTCTAAGATCGTATCTGTTGGAGATGACAGGGCCATCCATATCTATGATTGTCCCATGTGATGCACCAGCTCTTATTCCTACCACCTCTCCCAGCTGCAGACCAGGCAGCCTAAATACTGGCGCTCTAGTAAGAGTACCACAGCTTATCTTGCCTGGCTCATCCTACTTATGGTGCAGCTCAATATTCTGACTTGCCCTCCTTCCTCTCAGCTGCACTGATTTGAAAATTCACATTCACAAGCCCTGCTTCTTCTCATTGAGATGGAAGGTGAGGAGAGGAAGTCCATTTAGACTGTTGAGATGCACCTATGGCCTAGCTCAGTCAGAACAGCCCATGGTTGCCCCACTGAGCCAGAGCTAAACTGCAATCAAACAATGATTGTGGGGGTTCAATGTCATTGATTATTTTGCACTTCACTGTACCTTACCCTCCCTCAAAATAAATGATTTTTTTGTAATTTCATTTCCCCAACTAA

Function

GO:

id name namespace
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035327 transcriptionally active chromatin cellular_component
GO:0055087 Ski complex cellular_component
GO:0016593 Cdc73/Paf1 complex cellular_component

KEGG:

id description
K12602 WDR61, REC14, SKI8; WD repeat-containing protein 61

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180572 lncRNA upstream 7574 53312024 ~ 53343526 (+) True G158109
TU180440 lncRNA upstream 222079 53121169 ~ 53129021 (+) True G157986
TU180171 lncRNA upstream 258003 53092833 ~ 53093097 (+) True G157726
TU179938 lncRNA upstream 565515 52742500 ~ 52785585 (+) True G157500
TU179937 lncRNA upstream 609340 52741544 ~ 52741760 (+) True G157499
TU180645 lncRNA downstream 19870 53390250 ~ 53391247 (+) True G158167
TU180660 lncRNA downstream 42140 53412520 ~ 53412744 (+) True G158182
TU180670 lncRNA downstream 73664 53444044 ~ 53445745 (+) True psma4
TU180691 lncRNA downstream 126477 53496857 ~ 53497265 (+) True G158212
TU180697 lncRNA downstream 131202 53501582 ~ 53501878 (+) True G158218
XM_021564800.2 mRNA upstream 65676 53252808 ~ 53285424 (+) False sin3aa
XM_021564822.2 mRNA upstream 65676 53252855 ~ 53285424 (+) False sin3aa
XM_021564791.2 mRNA upstream 65676 53267186 ~ 53285424 (+) False sin3aa
XM_021564807.2 mRNA upstream 65676 53267186 ~ 53285424 (+) False sin3aa
XM_021564815.2 mRNA upstream 65676 53267186 ~ 53285424 (+) False sin3aa
XM_021564872.2 mRNA downstream 45733 53416113 ~ 53438769 (+) False ireb2
XM_021564878.2 mRNA downstream 47411 53417791 ~ 53438769 (+) True ireb2
XM_021564892.2 mRNA downstream 73668 53444048 ~ 53466316 (+) False psma4
XM_021564901.2 mRNA downstream 79270 53449650 ~ 53466316 (+) False psma4
XM_021564909.2 mRNA downstream 79878 53450258 ~ 53466316 (+) False psma4
TU178397 other upstream 1526918 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 1929978 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 1933982 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2028667 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2183926 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 651228 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 982603 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 1357916 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2575763 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2874664 56245044 ~ 56252598 (+) True G161687

Expression Profile