RNA id: XR_005037046.1


Basic Information

Item Value
RNA id XR_005037046.1
length 2100
RNA type mRNA
GC content 0.44
exon number 9
gene id rbpms2a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53637305 ~ 53651854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGAAGTAGCTGTGATTGACCGTGGTGGAGTGGGTTGGGCTTTGTTGGACAAGCTGAGAGCTATCAGAGATGAGTGCAAGTCATTCGCTTTGGCTTTTAATGTAATTGATGAGCAAATTGCAAAGCAGAGGACGAGGGACAACGGCGTGGACACCTCACGTTAAAGATTTTCCTAGGTCGATTTTTTTAAATTCTTTATTTCATTTTGACGTAAACGAGCTTGATGTGAGCAAGGGGGAAACAAGAGCACTTGTTTTTTTAACCTTTCTCTCACCTTCACAGTGCACCTATCCACTATTTCACCTTTAGTTTAACTTATTTTGTGGTTCCTTGGATACTTTTGGCTTTCCAGCACGGCTTCACCTGGTCACCCTTTTACTGCAGTCTCACGAAACGGCACCAAGATTTCTTCCGCAACTTTAAAGCACTTCAGAGAAATCTACCAACAGGGAAAACATACTTTTGTCTTATACAAAGAAGCGCAAAAGTCACATAATGAGTCTCAAATCTGATTCTGAGCCGAACAACAATGTTGTATCCTTGGAAGAGGAGGTACGAACTCTCTTTGTCAGCGGCCTTCCAGTTGATATCAAGCCACGGGAACTCTACCTGCTCTTCAGACCATTCAAGGGTTATGAAGGATCCCTTATTAAGTTGACTTCAAAGCAGCCTGTCGGGTTTGTTACCTTTGACAACCGGACAGGTGCTGAAGCTGCGAAGAACGCATTAAATGGGATCCGTTTTGACCCCGAGAGTCCCCAGACCCTGCGCTTAGAGTTCGCTAAAGCCAACACGAAGATGGCAAAGAGTAAGCTGATGGCCACACCGAACCCCTCAAATATCCACCCAGCTCTAGGAGCACACTTCATTGCACGGGACCCATATGACCTAACAGGGGCAGCACTGATCCCGGCCTCTCCCGAGGCGTGGGCCCCTTACCCACTGTACACCACGGAGCTTCCCCCTGGGCTCCCCCATGCTGCCTTCACCTACCCGGCCGCTGCCGCTGCTGCCGCAGCCCTCCACGCCCAGATGCGTTGGTACCCGTCCCCATCTGAAACCTCACAACCAGGATGGAAATCCCGTCAGTTCTGTTAAGTGTTTAATCCCATTCAGTACCTGAAGGTTTTTGTTTTTCCCCTCAGAGCAGAGTAAAGAAAAATGGAGAGGAGGATTTTGAGACTGTGGAAACATGTTGCGGACGACAATCTGAAGCAGAAGACAATCTGACTTTTTGGCCTTTGACggtacagcccccccccccccccccccaaaaaaaagtgtGCGCAGTCTTTTCTCGAAGTGGACCTAACTCTGTGCTGAAACTATCAAGCTGCTCTCTATTGGATGTGGGTGGGACTCAACAATCAATCCATGTTGAGGTATTCGGCATGAATTAGAAATCCAAACATTTTGTCATTTCGTATTGCTTATGTTGCCATAATAGCGAGAGGTCTCGGCGGACCCCTACAGTATGTTTTCATTATTCTTAGTCTCGCTTCTTTGAAGATTACCTTGGATTGAGTTGCTTACGATGTTACCTGCGAAGTAGATGCAGACATCTTGTTACTTGtaatttttgtttttttctttgttcaGAATGGATAATGTATGCACTGGGTTTTCTTTTTCTTCCTCTGATCTTTAACTGTAAACCTGTCCAAGAATGCTGATGCTGTCTGTAACCTTGGACCTTTTGAATGCAACCTCTAATGACCCAGTTTTGCCAAAATATCTATCTGTTTAGATTATATTTGAACAAAAAAGTGAGTACAAGTATTTTTGTACATTTGTGTAATGAGTATTTATGCATTTTTTTTGTGCAATTTAAAGAAGTAATCTGTATAAGTTGATGTTTAGTCTGCCCTTGTGGGTTTCTTTGGTGTTATTTTTGATGGATGTTGAATCCTGTCTATAATATCCTGTTTTGAAGTAGAACAAAAGTGCAATTTTCTTTGGCTTGGTGTTAAATACTGAAATATTCTGACCGTGGCAGTCAGAACTGCTACTGTACATGGACTGCTAACATGAGATTGCTGTAAAACAAAATGCTGATCATTCAGAATGTGAAACTGGATAATAAATGGATTGATCTGAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25091 RBPMS; RNA-binding protein with multiple splicing

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181013 lncRNA upstream 82682 53554358 ~ 53554623 (+) True G158514
TU180995 lncRNA upstream 91210 53545871 ~ 53546095 (+) True G158496
TU180994 lncRNA upstream 91532 53545571 ~ 53545773 (+) True G158495
TU180991 lncRNA upstream 92555 53544529 ~ 53544750 (+) True G158492
TU180989 lncRNA upstream 93319 53543361 ~ 53543986 (+) True G158490
TU181115 lncRNA downstream 25115 53676969 ~ 53677266 (+) True G158607
TU181089 lncRNA downstream 30788 53682642 ~ 53682859 (+) True G158584
TU181088 lncRNA downstream 31078 53682932 ~ 53685702 (+) True G158583
TU181120 lncRNA downstream 33922 53685776 ~ 53685981 (+) True G158612
TU181121 lncRNA downstream 34184 53686038 ~ 53686811 (+) True G158613
XM_021564892.2 mRNA upstream 170989 53444048 ~ 53466316 (+) False psma4
XM_021564901.2 mRNA upstream 170989 53449650 ~ 53466316 (+) False psma4
XM_021564909.2 mRNA upstream 170989 53450258 ~ 53466316 (+) False psma4
XM_021564872.2 mRNA upstream 198536 53416113 ~ 53438769 (+) False ireb2
XM_021565010.2 mRNA downstream 47964 53699818 ~ 53794946 (+) False LOC110491473
XM_021565019.2 mRNA downstream 47964 53699818 ~ 53794946 (+) False LOC110491473
XM_021565027.2 mRNA downstream 47965 53699819 ~ 53794946 (+) False LOC110491473
XM_021565036.2 mRNA downstream 47969 53699823 ~ 53797088 (+) False LOC110491473
XM_021565043.2 mRNA downstream 47969 53699823 ~ 53797088 (+) False LOC110491473
TU178397 other upstream 1813123 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2216183 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2220187 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2314872 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2470131 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 369754 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 701129 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 1076442 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2294289 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2593190 56245044 ~ 56252598 (+) True G161687

Expression Profile