RNA id: XM_021565019.2


Basic Information

Item Value
RNA id XM_021565019.2
length 3527
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC110491473
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53699818 ~ 53797088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTAGTGTGCCTTTAAGAGGTGCCCTGACCGCCGCACTAAATCTCCATCATTGTGTTCCAAAGAAGCTGCTGAAATGTCTGCTAGCTCCGCTTTCAATGATGAAAAAGGGGGCTCCTCGAATGTCGGGGAGCCCGAATATGGCCACGACCCGGCCAGCGGAGGGATTTTCTCCTCCGACTACAAAAGACATGATGACTTGAAAGAGATGCTGGACAGCAACAAAGACTCCCTGAAACTGGAAGCTATGAAGAGGATTGTGGCTATGATCGCCAGAGGGAAGAATGCCTCTGACCTCTTCCCAGCAGTGGTGAAGAATGTGGCCTGCAAGAACATCGAGgtgaagaagctggtCTATGTGTACCTGGTGCGCTATGCTGAGGAGCAGCAGGATCTGGCTCTGCTCTCCATTTCAACCTTTCAGAGAGGCCTGAAGgACCCTAACCAGTTGATCCGGGCCAGTGCTCTGCGTGTGCTCTCCAGCATCAGAGTCACCATTATTGTCCCTATCATGATGCTGGCCATCAAAGAGGCTGCCTCCGACATGTCCCCCTATGTGAGGAAGACGGCAGCTCACGCCATCCCCAAACTCTACAGCTTGGACCCAGAACAGAAGGACTGTCTGATTGAGGTCATTGAGAAGCTCCTTGCTGATAAAACCACACTAGTGGCAGGTAGTGTTGTCATGGCCTTTGAGGAGGTGTGTCCTGAGCGCATAGACCTGATCCATAAGAACTACCGTAAACTGTGTAACCTGCTAATCGACGTGGAGGAGTGGGGTCAGGTGGTCATCATCAACATGCTCACTCGCTACGCCCGGACGCAGTTCCTCAACCCCAACATGAACgaATCCCTGttggaggagggtggtggagagaAGGCCTTCTATGGCTCTGATAATGATGATGACACCGATGATGAGGAAgacaaagaggagaaggagaagaagaagactgaGGCGACTGCCATTGTCAAGAGGAAGCCTTACGTCATGGACCCAGACCACCGGCTACTGCTGAGGAATACCAAGCCCCTACTGCAGAGTCGAAACGCAGCAgtGGTGATGGCTGTGGCTCAGCTATATTTCCACCTGGCACCCAAAGCGGAGGTAGGCGTCATTGCCAAGGCTCTGGTGCGCCTCATGAGGAGTCACAGTGAAGTGCAATATGTCGTCCTTCAGAATGTGGCAACAATGTCCATCAAGAGAAGGGGGATGTTTGAGCCCTATCTGAAGAGTTTCTACATCCGCTCCACAGACCCAACCCAGATTAAAGTCCTCAAGCTGGAGGTTTTGACCAATTTGGCCAACGAGACAAATATATCCACCATCCTGAGAGAATTTCAGACGTACATTAAAAGCAATGATAAGGACTTTGTGGCAGCAACCATCCAGGCCATCGGCCGCTGTGCCACCAACATTGGGGAGGTGAGGGACACCTGTCTCAACGGCCTGGTGCAGCTGCTCTCCAACCGCGATGAGTTAGTAGTGGCCGAGTCGGTGGTGGTGATTAAGAAGCTGCTGCAGATGCAGCCCGAGCAGCACAGTGACATCATCAAGCACATGGCCAAACTCACCGACAACATCCAGGTGCCCATGGCGCGGGCCAGTATCCTGTGGCTGATCGGGGAGTACTGCGAGCACGTTCCCAAGATCGCTCCGGATGTCCTGAGGAAGATGGCCAAGACCTTCACCAACGAGGAAGACATCGTCAAGCTGCAGATCATCAACCTGGCTGCCAAACTCTACCTGACCAACTCCAAACAGACAAAACTGCTCACTCAGTACGTGCTGAACCTGGCCAAGTACGACCAGAACTATGACATTCGCGACCGGGCACGCTTCATCCGCCAGCTCATCGTGCCCACTGACAAGAGTGGTGCCCTCAGCAAGTATGCCAAGAAGCTGTTCCTGGCCCTTAAGCCTGCGCCCGTCCTCGAATCTCCATTTAAAGaTCGAGACCACTTCCAGCTGGGCTCGTTGTCCCACCTACTGAATGCCAAGGCCGGCGGCTACCAGGTGCTGCCTGACTGGCCCGAGGCCGCCCCAGACCCCTCTGTGCGCAACGTGGAGGTGAAGGAGTCTGTGCCGGAGTGGACCAAGTGCAGCAGCCGTGAGAAAAGGAAAGAAAAGAAGGCGGACAAGCCATTCTACTCTGACTCGGAGGGCGAGTCTGGCCCGACCGAGTCTGCTGACAGTGCCTCAGACACAGCCAGCGGCTCAGAGAGTGGCAGTGGCAGTGAGGAGAGCGGCTCTGGATCCGAGAGTGAGGAGAgcaacgaggactctgagtctgcaagcgaggaggatgaggaggaagaggggaagaagaaaaagaagaatgtGGAGAAGATCAAAGCAAGGAAACCTGTTCCAGAAAGTGAAAGTGAGCCgagcagtggagaggaggtgAAGAAAAGCGAGAAGAAGAGCAAACCGCGGATTGGTAGCTCCGAGTCAGAATCCGAGGAGGACGAAGATAGTGAGTCAGAGAGCAGCGAgtcagaggaggaggagtctgAAGAGGAGTCAGAGGAGGAGACCAAGAAGAAAAAGAAGACCACAGCATCTAAACCTCCATCCAAACCACCCAAAAAAGAGAACAAGAAGGAAAAGAAAGAAATGTCTCTGCTTGATTTTGATGACTTTGACCCCGCTCCATCTCCGTCTCAAGTCACGCCCCTCAACAACTTCCTGTCCAGCAGCCTAGTGACAGATCTGGAGGGCTTGTCCCTGACCGACAACGTTCTGTCCCCTACGACCATCGTCCCATCCGGCAATCTGAAGACCTACGAGCTGCTCCACCGTATCACCGGCGAGGGCCTGTCAGTGGAGTACTGCTTCAGCCGCCAGCCGTTCAGCCCCGACCCGCACATGGTGGCAGTCAAAATCCAGTTCACCAACAGCGCCACCTCCGAGGCCAAGAGCCTGCACGTGGAGGACGCCAAGTTGCAATCAGGCATGAGGATCAAAGAGTTCCCTGAGATCGAGGTGTTACCTGCGGGCGAGACTGTCAGCGTGGTGATGGGCATCGATTTCTGTGATTCCACACAGGCAGCCAACTTCCAGCTCTGCACTCACACCAGGAAGTTCTTTGTGTCGATCCAGCCACCGGTTGGAGAGCTGATGATGCCAATCTTTATGACAGAAAATGAGTTCAAAAAGGAGCAAGAGACGCTATTACAAAGTCTAGGTCAGTTGATGGGCATGAATGAGATCACAGAGAAGCTGACCCTGGAGGAGAAGTGTCAGGGCGAGCACGCTGTCGTTCAAAGGGTTACCACTGCCGCCAACCTCAGCCGAGTGCCCTGTGGCTCAGACAAGGAGTGCAGCCCTCCTGTACCTCCTCCCCCGTTTCCGATTCACAGGTTCGCTGGGAAGACGGTGACCAGTGGCAGCCTTGTACTGGTCAGTGTGGTCACCAAAGAGGACGGGGCCGCCCAGCTGACGGTCAACTGTGAGAAAATGGTGATTGGCACGATGCTGGTCAAGGACATCCTTCAGGCCCTCACCCAGTGATGACCCCTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181126 lncRNA upstream 9415 53690202 ~ 53690403 (+) True G158618
TU181125 lncRNA upstream 10222 53689174 ~ 53689596 (+) True G158617
TU181124 lncRNA upstream 10838 53688680 ~ 53688980 (+) True G158616
TU181121 lncRNA upstream 13007 53686038 ~ 53686811 (+) True G158613
TU181120 lncRNA upstream 13837 53685776 ~ 53685981 (+) True G158612
TU181217 lncRNA downstream 29591 53824537 ~ 53824776 (+) True G158706
TU181218 lncRNA downstream 30456 53825402 ~ 53825723 (+) True G158707
TU181244 lncRNA downstream 93598 53888544 ~ 53888842 (+) True G158731
TU181245 lncRNA downstream 93958 53888904 ~ 53889239 (+) True G158732
TU181260 lncRNA downstream 120028 53914974 ~ 54010809 (+) True G158742
XM_021564940.2 mRNA upstream 47964 53637305 ~ 53651854 (+) False rbpms2a
XM_036950411.1 mRNA upstream 47964 53637305 ~ 53651854 (+) False rbpms2a
XR_005037045.1 mRNA upstream 47964 53637305 ~ 53651854 (+) False rbpms2a
XR_005037046.1 mRNA upstream 47964 53637305 ~ 53651854 (+) True rbpms2a
XM_021564909.2 mRNA upstream 233502 53450258 ~ 53466316 (+) False psma4
XM_021565070.2 mRNA downstream 2280 53797226 ~ 53823634 (+) False cpeb1a
XM_036950481.1 mRNA downstream 2280 53797226 ~ 53823634 (+) False cpeb1a
XM_021565056.2 mRNA downstream 2281 53797227 ~ 53823634 (+) False cpeb1a
XM_021565063.2 mRNA downstream 2282 53797228 ~ 53823634 (+) False cpeb1a
XM_021565078.2 mRNA downstream 2282 53797228 ~ 53823634 (+) True cpeb1a
TU178397 other upstream 1875636 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2278696 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2282700 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2377385 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2532644 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 226662 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 558037 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 933350 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2151197 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2450098 56245044 ~ 56252598 (+) True G161687

Expression Profile