RNA id: XM_021565043.2


Basic Information

Item Value
RNA id XM_021565043.2
length 5595
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC110491473
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53699818 ~ 53797088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGCCTTTAAGAGGTGCCCTGACCGCCGCACTAAATCTCCATCATTGTGTTCCAAAGAAGCTGCTGAAATGTCTGCTAGCTCCGCTTTCAATGATGAAAAAGGGGGCTCCTCGAATGTCGGGGAGCCCGAATATGGCCACGACCCGGCCAGCGGAGGGATTTTCTCCTCCGACTACAAAAGACATGATGACTTGAAAGAGATGCTGGACAGCAACAAAGACTCCCTGAAACTGGAAGCTATGAAGAGGATTGTGGCTATGATCGCCAGAGGGAAGAATGCCTCTGACCTCTTCCCAGCAGTGGTGAAGAATGTGGCCTGCAAGAACATCGAGgtgaagaagctggtCTATGTGTACCTGGTGCGCTATGCTGAGGAGCAGCAGGATCTGGCTCTGCTCTCCATTTCAACCTTTCAGAGAGGCCTGAAGgACCCTAACCAGTTGATCCGGGCCAGTGCTCTGCGTGTGCTCTCCAGCATCAGAGTCACCATTATTGTCCCTATCATGATGCTGGCCATCAAAGAGGCTGCCTCCGACATGTCCCCCTATGTGAGGAAGACGGCAGCTCACGCCATCCCCAAACTCTACAGCTTGGACCCAGAACAGAAGGACTGTCTGATTGAGGTCATTGAGAAGCTCCTTGCTGATAAAACCACACTAGTGGCAGGTAGTGTTGTCATGGCCTTTGAGGAGGTGTGTCCTGAGCGCATAGACCTGATCCATAAGAACTACCGTAAACTGTGTAACCTGCTAATCGACGTGGAGGAGTGGGGTCAGGTGGTCATCATCAACATGCTCACTCGCTACGCCCGGACGCAGTTCCTCAACCCCAACATGAACgaATCCCTGttggaggagggtggtggagagaAGGCCTTCTATGGCTCTGATAATGATGATGACACCGATGATGAGGAAgacaaagaggagaaggagaagaagaagactgaGGCGACTGCCATTGTCAAGAGGAAGCCTTACGTCATGGACCCAGACCACCGGCTACTGCTGAGGAATACCAAGCCCCTACTGCAGAGTCGAAACGCAGCAgtGGTGATGGCTGTGGCTCAGCTATATTTCCACCTGGCACCCAAAGCGGAGGTAGGCGTCATTGCCAAGGCTCTGGTGCGCCTCATGAGGAGTCACAGTGAAGTGCAATATGTCGTCCTTCAGAATGTGGCAACAATGTCCATCAAGAGAAGGGGGATGTTTGAGCCCTATCTGAAGAGTTTCTACATCCGCTCCACAGACCCAACCCAGATTAAAGTCCTCAAGCTGGAGGTTTTGACCAATTTGGCCAACGAGACAAATATATCCACCATCCTGAGAGAATTTCAGACGTACATTAAAAGCAATGATAAGGACTTTGTGGCAGCAACCATCCAGGCCATCGGCCGCTGTGCCACCAACATTGGGGAGGTGAGGGACACCTGTCTCAACGGCCTGGTGCAGCTGCTCTCCAACCGCGATGAGTTAGTAGTGGCCGAGTCGGTGGTGGTGATTAAGAAGCTGCTGCAGATGCAGCCCGAGCAGCACAGTGACATCATCAAGCACATGGCCAAACTCACCGACAACATCCAGGTGCCCATGGCGCGGGCCAGTATCCTGTGGCTGATCGGGGAGTACTGCGAGCACGTTCCCAAGATCGCTCCGGATGTCCTGAGGAAGATGGCCAAGACCTTCACCAACGAGGAAGACATCGTCAAGCTGCAGATCATCAACCTGGCTGCCAAACTCTACCTGACCAACTCCAAACAGACAAAACTGCTCACTCAGTACGTGCTGAACCTGGCCAAGTACGACCAGAACTATGACATTCGCGACCGGGCACGCTTCATCCGCCAGCTCATCGTGCCCACTGACAAGAGTGGTGCCCTCAGCAAGTATGCCAAGAAGCTGTTCCTGGCCCTTAAGCCTGCGCCCGTCCTCGAATCTCCATTTAAAGaTCGAGACCACTTCCAGCTGGGCTCGTTGTCCCACCTACTGAATGCCAAGGCCGGCGGCTACCAGGTGCTGCCTGACTGGCCCGAGGCCGCCCCAGACCCCTCTGTGCGCAACGTGGAGGTGCCGGAGTGGACCAAGTGCAGCAGCCGTGAGAAAAGGAAAGAAAAGAAGGCGGACAAGCCATTCTACTCTGACTCGGAGGGCGAGTCTGGCCCGACCGAGTCTGCTGACAGTGCCTCAGACACAGCCAGCGGCTCAGAGAGTGGCAGTGGCAGTGAGGAGAGCGGCTCTGGATCCGAGAGTGAGGAGAgcaacgaggactctgagtctgcaagcgaggaggatgaggaggaagaggggaagaagaaaaagaagaatgtGGAGAAGATCAAAGCAAGGAAACCTGTTCCAGAAAGTGAAAGTGAGCCgagcagtggagaggaggtgAAGAAAAGCGAGAAGAAGAGCAAACCGCGGATTGGTAGCTCCGAGTCAGAATCCGAGGAGGACGAAGATAGTGAGTCAGAGAGCAGCGAgtcagaggaggaggagtctgAAGAGGAGTCAGAGGAGGAGACCAAGAAGAAAAAGAAGACCACAGCATCTAAACCTCCATCCAAACCACCCAAAAAAGAGAACAAGAAGGAAAAGAAAGAAATGTCTCTGCTTGATTTTGATGACTTTGACCCCGCTCCATCTCCGTCTCAAGTCACGCCCCTCAACAACTTCCTGTCCAGCAGCCTAGTGACAGATCTGGAGGGCTTGTCCCTGACCGACAACGTTCTGTCCCCTACGACCATCGTCCCATCCGGCAATCTGAAGACCTACGAGCTGCTCCACCGTATCACCGGCGAGGGCCTGTCAGTGGAGTACTGCTTCAGCCGCCAGCCGTTCAGCCCCGACCCGCACATGGTGGCAGTCAAAATCCAGTTCACCAACAGCGCCACCTCCGAGGCCAAGAGCCTGCACGTGGAGGACGCCAAGTTGCAATCAGGCATGAGGATCAAAGAGTTCCCTGAGATCGAGGTGTTACCTGCGGGCGAGACTGTCAGCGTGGTGATGGGCATCGATTTCTGTGATTCCACACAGGCAGCCAACTTCCAGCTCTGCACTCACACCAGGAAGTTCTTTGTGTCGATCCAGCCACCGGTTGGAGAGCTGATGATGCCAATCTTTATGACAGAAAATGAGTTCAAAAAGGAGCAAGGTCAGTTGATGGGCATGAATGAGATCACAGAGAAGCTGACCCTGGAGGAGAAGTGTCAGGGCGAGCACGCTGTCGTTCAAAGGGTTACCACTGCCGCCAACCTCAGCCGAGTGCCCTGTGGCTCAGACAAGGAGTGCAGGTTCGCTGGGAAGACGGTGACCAGTGGCAGCCTTGTACTGGTCAGTGTGGTCACCAAAGAGGACGGGGCCGCCCAGCTGACGGTCAACTGTGAGAAAATGGTGATTGGCACGATGCTGGTCAAGGACATCCTTCAGGCCCTCACCCAGTGATGACCCCTAACTCTTGAcccctgacctttgaccccagcaatttccttcctctcctacaGCTCGGTTCTGTCTCCCTTTGCTCACTCACATACATACAACCACACATTCATCCACTCTCATTCCAAATACCCCAATACTTAgagtcctctttctcttccttaagATACTGGTAGTCTGATAAGAATATGTAGAAGACAGGTTTGATCCATCGCTCAATTGATATTCTCCATGTAATGCAGGTTTCAAACAAATTATGATGATTTTTTACTTATACGAGAGATGCAAATCTGGGGGAAATAATAGGCCCCACTTTGACTTTTAAAATCACTTCCTACGAACCGTCGTAACAAATTACAGAATGGCATTACTGTACACGATTTGTAAAGACAATAAGTCATTAAGAATCATCCCACTGATCAAATAAAATCTGTGACgatgttgaatcaacatggaaaactgattggatttgcaaaaagtaatcaacataagggaattttttttttttcacacaaCTTTTAACCTATATttgtttgttgatttcacattgaattcatgttaactcaaaaatgttttaatcaaaactagacattgaactgaggtcagtgcccagtgggatgtttaTCCTAACCAAAAATCCTTCTTATCATTTGTGATGACTGCTGTAAAGGTTTGACATGCTCTCTTTAGCCATATCTACGAATGGCTCATGATGTATAGTACATTATTGTCTGAACTAAAGACTGCGAGTCCTCACCTATACTCTTGCTATATTTGTTTCGGCCAAGCGCAAATGTACTATGTAGAAAACACcatgcctttttaaaaatgtagtgTGGTACCATTACCAACATTACTTAGGTACAGTAACAGGGTATATCATCAAAAAAGTGGTCACTCCTCAATTTACTTTGGTCTGTTGAATGTTCAATGAAGTCCCCTTTTGAATAGTGTAGTTCTCTATTCTCAATCTCTACCGCCTGGCCCGCTAAATGTCATACACATAGAATAGATGTTATTGAGTGGGAGTCCTGCAGTTGAAAATGATATACAGTAAACGTGATTGAATGCATTGCAATATTTAATACAAAATCTAAggtctgtgttagtgtgtgtctgtgtctgtgtctgtgtgtatgaatGATTTCCAAACATGACAATGTTAAATCATCATGGCCCAAGGCAAACTGTTCTGTAATCAGCAGCTATCTGTGTTTTCCTGCCTTTCCATTGACTTTTGCATATACTTACTGTATTTCCAGTATAGGTTAACCATGCTATATTTAAAAGTGGTTTCTATCATGCTATAAACCCACTGATGTTGTCATAATGAGACCTACGGAAATGGGATCCTAAGGAAACTGCACTATGCTGTCTTGGGCGCCAATGGGTCACACCAGGTAAAGGGCCTTGCTCTGTATCGGGGAGACACGTGATATGATATAACATAACCCACCTGCATATCTGCGAGCTGCCTTCGTGACATAAgtgatgttatttatttatttgtttagattttttttgccatAGGAACATGTATTTGTATCGTCACACCAAAGGAGTTCAATACAGCAAGCATCAATAACAGTTATCATAGAAAGTGAAAGAAAAGGGAAAATGACAGCAGTTTTTTACTCCTTGAAATTTGAATTGTTTTATTTGTTCAGTATCGCACTGGTAAATCTTTCAAGCTTGTGAACTTAATTCACAGGTTTGTGGAGTCATGACACCGTCAAAGAACAAATCATTTAAGTTGAATATACATGTAATTTCAAATTCATTTTACTACTGGTATGCAGACAATTTGAGAACATAATTTGCTTAACTCATACCATTGACCTTATGAAAAGTACCTTATTGAAAGTACTGTTAAACGTGGCAGTGGTCTATTATTTCCTCCCCTAAAATACAAAGCTATATATAACTTTGAATGGTTAAACCTTTCTCTCAAAATGAAAACTTTGCAATTAATTTAAGATAATAGTGGATGGAGCAATCCTTCAAAGggtattgttattttaatgcacACTCGCTTTCTCTTTCTGATGTCATGATTATGGTCTACCATATCTTCTGTGTGGTTATGAAATAATGTGATgtttaagcttttatttattattcaaatgaaaataatgaaataaaacGGATGAAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181126 lncRNA upstream 9420 53690202 ~ 53690403 (+) True G158618
TU181125 lncRNA upstream 10227 53689174 ~ 53689596 (+) True G158617
TU181124 lncRNA upstream 10843 53688680 ~ 53688980 (+) True G158616
TU181121 lncRNA upstream 13012 53686038 ~ 53686811 (+) True G158613
TU181120 lncRNA upstream 13842 53685776 ~ 53685981 (+) True G158612
TU181217 lncRNA downstream 27449 53824537 ~ 53824776 (+) True G158706
TU181218 lncRNA downstream 28314 53825402 ~ 53825723 (+) True G158707
TU181244 lncRNA downstream 91456 53888544 ~ 53888842 (+) True G158731
TU181245 lncRNA downstream 91816 53888904 ~ 53889239 (+) True G158732
TU181260 lncRNA downstream 117886 53914974 ~ 54010809 (+) True G158742
XM_021564940.2 mRNA upstream 47969 53637305 ~ 53651854 (+) False rbpms2a
XM_036950411.1 mRNA upstream 47969 53637305 ~ 53651854 (+) False rbpms2a
XR_005037045.1 mRNA upstream 47969 53637305 ~ 53651854 (+) False rbpms2a
XR_005037046.1 mRNA upstream 47969 53637305 ~ 53651854 (+) True rbpms2a
XM_021564909.2 mRNA upstream 233507 53450258 ~ 53466316 (+) False psma4
XM_021565070.2 mRNA downstream 138 53797226 ~ 53823634 (+) False cpeb1a
XM_036950481.1 mRNA downstream 138 53797226 ~ 53823634 (+) False cpeb1a
XM_021565056.2 mRNA downstream 139 53797227 ~ 53823634 (+) False cpeb1a
XM_021565063.2 mRNA downstream 140 53797228 ~ 53823634 (+) False cpeb1a
XM_021565078.2 mRNA downstream 140 53797228 ~ 53823634 (+) True cpeb1a
TU178397 other upstream 1875641 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2278701 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2282705 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2377390 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2532649 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 224520 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 555895 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 931208 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2149055 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2447956 56245044 ~ 56252598 (+) True G161687

Expression Profile