RNA id: XM_021565070.2


Basic Information

Item Value
RNA id XM_021565070.2
length 3361
RNA type mRNA
GC content 0.50
exon number 12
gene id cpeb1a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53797226 ~ 53823634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATATGACGTCATGTCTGGAAGCAACTGACCCTAGGGCCCATGAGCAGACAGTGTGATTTCCCTCCGCGTGCTGAACCTTAAAATAGCTCAATAGGTGCCTCAAAATCCGTTTTCAGAGGTTAACAGGAGGCAATGAAATACTGGAAGTTATAGTACTGAAACTACGACGTGATGTACCACATTTTAATTTAGTTAAAATTTGATTTGTAGGTCTGTGCATCTTCAGTCTACTTCAGTGGTGCCGCTTCAGCCATTTCAAATGAATTACCCCGCATGCCGTTAACAGATAAGTTGACGCACATTTTCCTAATCATGACACCTGAGTATTGAAAGTAGTCTTCAAGTAGTGTTtcgaggcaggcagacagatattTGACACATCCACGCGGGTTCCTGTCCAATAATATGGCCTTTTCTCTGAAAGAAGACCTGAGGCTCCATGACCACTGGCATACAGGCTCTCAAGCCCTGCCTACATGCAGTAATGGTGATATCTTCCGCCGAATTAACAATATGTTGGGCAACTCTCTGGACCTCACTGGGGTGTGCACTACACCCACAAACCACAAGGGGGAGGGTGTCCATCACCTGTCAGATGGGGATTTTGCAGTGATGGGTAGCCCTATAGGCAGCAAGGTTCCTTGCCCCTCCAGAGCCCAGGGCTCTACGCTCTGTGGTGGTGGCCTGTCTGATCTCACTCAGCTGGGCCTGGGGCTGCAGTCGCTCAGCCTAGCCTGCTGGGAGCAGCCCTCCGCTACCATGGAGCCTCCGTCACACACCAACTCGCCCTCCATGCTAGGCATGCTGGGTAGCCCAATGGGCCAGGCTCTGGAACCTCTGGGCACCACAGATCTGCTGGCGATGTTCCCTGGGCTGAGTCATGGTGGAAATCCCCGCGTGGAGGGGCGCTCCTTCCTGGACTCGCGCTGCAGCAGCCCGGCTGACTCTGAAACCAGTGGCTTTAGCTCCGGATCGGACCACCTCTCTGAGCTGCTGTCTTCTCTGCGGATCTCCCCGCCCCTGCCATTCATGATGCCGGGGGTACAACAGAGGGACCCCCACATTCTAGGCACAGCCGTTGGCTGTTCTCGCCTGGACCTCCACAACGACAACTCTGCTCTCAGCCCTGAGCCCCCCACTCTAAAGGGCCAAAGCCGCTGTGGGGTGCCCCTGGCCAAGCGCTTGCCCCAGGCCTCAGTGTGGCCCAGCTGGGACTTGCTGGAGGAGCCCCAGAAGCCCTTCAACATCGAGAGGGAGGCTCGCCTGCACAGACAGGCTGCAGCTGTGAACGATGCCACCTTCACATGGAGCGGCCAGCTGCCTCCCAGGAACTACAAGAACCAAGTGTACTCATGTAAAGTGTTCCTGGGCGGTGTGCCATGGGATGTGACTGCAGCCAGCCTGGTCGGCACGTTCAGCGTGTACGGACCTCTGAGTGTGGAGTGGCCGGGTAAGGATGGGAGGCACCCACGCTGCCCACCCAAAGGCTATGTGTATCTGGTGTTTGAGAGTGAGCGGTCTGTCCATGGGCTGCTGCAAGCTTGCACCCAGGACCTGCTCCACAAGGATGACTATAGGGAGTATTACTACAAGATGTCTAGCCGAAGGATGCGCTGCAAGGACGTGCAGGTAATCCCTTGGGTGCTGGTTGACAGTAACTTTGTGCGCTGCCCGTCCCAGCGGCTGGTCCCCAGTAAGACTGTGTTTGTAGGCGCGCTGCATGGCATGCTCAACGCAGAGGCCCTGGCCTTCATCATGAACAACCTCTTTGGAGGGGTCATGTACTCTGGCATCGACACGGACAAACACAAGTACCCCATAGGGTCGGGACGTGTGACCTTCAACAACCAGAGGAGCTACCTGAAGGCTGTGAGCGCCGCCTTTGTGGAGATCAAGACTCCAAAGTTCACCAAAAAGGGCTGGATCAATGCATTGATTTGTCTACTCAGGTTCAGATCGACCCCTACTTGGAGGACTCCACGTGCCAAGTGTGTAACCGACAACCAGGGCCCTTCTTCTGCAGAGACCTGGCCTGCTTCAAGTACTTCTGCCGCTCTTGCTGGCACTGGCAGCACTCCATGGACGTGCTCCGCAGCCACAGGCCTCTCATGAGAAACCAGAAGCGCCTGGACTGCAGCTAAGCTGCCTGTCATGGCAACACTCCAGGAGGCTCCAGAGATCCCCCACAGGAGCTGGAGCCAGGATAAGGGAGAGGCTAACCACAGGAGCCCCAGAGCCTGTTATCCCCCTCAACAGGGCCCAGGGGAAGAACCACTAGGAATATTCACTACTGCACTGTGCTCTCTTTTTGCCGTTTACTCGTTTTCACTAATGGCACTTATGCACAGTAAAGGGTTGGAGTTATTGAGACAACTATTATAATTCAGGGCAGGACATTAAAAGGCATCCATAGATGTTCCTCTCCCTAGATTTCTGAGTTGATTTTGTTGTTGATCCTTAACTTTATATATTTCAGGTCCCATTGTTCTTCATTGCAGATGCCAGACTgtgcctttttttttatttttttgaccaTCCCACCACATCTACCAAAATTCCTCAGAGGTAGATGTTTTTGTTGGGGGGGTGAGGAGTTTGGGAATCAGTTGTCCAGTAGCGTACCTTGATATTTTTTACGCAGGTATTTTACACATTTTTACTCATGGTTTTAAGTCCTAACATGGTAACTTAATATAATATCTACTTGACTGCTTTTTAATTTCTTTTTGCCCGATTTTAGTTTTTGCCCCTTCAAAGTAATTACCTGGGGCTGTCGGTTTGTACATTTTAGTTTTTTTACAAATATGAAGTGGTTGAAGCCTTTGCTCTGCCTAGCTGTCGGTGCTCCAGCATTTTTAGCCATCCATTGCCAGATGCTGACCAGTCAAACCAACAGGCTTTCAACTAATGATCAGATAATATGGAAATAACACTGGAACGAACCTTGATCTCGACTGTACATAGTTTTAATCAACTTACTGTTGTACTTTTTGATTTGCATTTGAGAAAAGGTTTGACTTGTTTTTTTAATCACCTGTTATCTTTTTTCAGCAGGACAGATGTCATCGGAAGTGTTTTTCTTAGCTGCTTGGTTCCTGTTGAATTTAGAACCAACTTTGTTAGTATGATGCGACCAAACATAGCTTACCTCCCCATACCCTTCTCCCACCCCTTTTGTTGTCATTGGAGGCTCTTCCAAAGACCTATTGTCAtccctttttctttcttttttttttatcaagttTCTTGTGCTGCTTTTTAGGGTTTGAAAGTCTACCTCATTGGTTTGCTAATGTTGCTGCTGTTGCCTACAGGTGTGGAGGGTGTTCTGATTGCACAATAAAGGTGTTGAAGCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181126 lncRNA upstream 106823 53690202 ~ 53690403 (+) True G158618
TU181125 lncRNA upstream 107630 53689174 ~ 53689596 (+) True G158617
TU181124 lncRNA upstream 108246 53688680 ~ 53688980 (+) True G158616
TU181121 lncRNA upstream 110415 53686038 ~ 53686811 (+) True G158613
TU181120 lncRNA upstream 111245 53685776 ~ 53685981 (+) True G158612
TU181217 lncRNA downstream 903 53824537 ~ 53824776 (+) True G158706
TU181218 lncRNA downstream 1768 53825402 ~ 53825723 (+) True G158707
TU181244 lncRNA downstream 64910 53888544 ~ 53888842 (+) True G158731
TU181245 lncRNA downstream 65270 53888904 ~ 53889239 (+) True G158732
TU181260 lncRNA downstream 91340 53914974 ~ 54010809 (+) True G158742
XM_021565036.2 mRNA upstream 138 53699823 ~ 53797088 (+) False LOC110491473
XM_021565043.2 mRNA upstream 138 53699823 ~ 53797088 (+) False LOC110491473
XM_021564951.2 mRNA upstream 138 53718776 ~ 53797088 (+) False LOC110491473
XM_021564976.2 mRNA upstream 1883 53718778 ~ 53795343 (+) False LOC110491473
XM_021565001.2 mRNA upstream 2197 53718779 ~ 53795029 (+) False LOC110491473
XM_036950502.1 mRNA downstream 29194 53852828 ~ 53867057 (+) False snx1a
XM_036950517.1 mRNA downstream 29194 53852828 ~ 53867057 (+) False snx1a
XM_036950519.1 mRNA downstream 29194 53852828 ~ 53867057 (+) False snx1a
XM_036950499.1 mRNA downstream 29194 53852828 ~ 53868273 (+) False snx1a
XM_036950509.1 mRNA downstream 32609 53856243 ~ 53868273 (+) True snx1a
TU178397 other upstream 1973044 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2376104 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2380108 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2474793 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2630052 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 197974 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 529349 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 904662 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2122509 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2421410 56245044 ~ 56252598 (+) True G161687

Expression Profile