RNA id: XM_021565090.2


Basic Information

Item Value
RNA id XM_021565090.2
length 2921
RNA type mRNA
GC content 0.46
exon number 13
gene id sv2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53823772 ~ 53851668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGGTTCAGTTcactcagagaggaagaggcgaagcaagaGGGGTAACTTAGCCCAAAATCTGTCTACTCCGGCATGTGGCGTTTTTCTGCTCACCAAGTGAttagtttttgtatggaggtcaattagagtgtcgaatttggttaaCAAAAAGTTGAATGGTTTATTTGCTACATGTGACTTATTTGATATAATCGAAGTTTTGTAATGCGTGTAGGCGTGTACTGATATACGTAGGACATGTGACAttccggcaactttgagaaaaaacaccTCATATCGGAGTTGTGGGTGTTGTTTCATTCACGTTTAGCCCTcccattggctagaatggtcccatgATCTTGCCTCCTCCGTCTgccttcctttttttttttaagacatTTATTTTCATAGTTAGAGCGGCCACTAGAGTATCTGTTCAATATAATGGATAATTTTTTGGTTCACTCCATAACTGTGTGGATAAATATGTGGTTCTCTGGTAATACAGTTACTATGCATCAAGAAAGTCTCCACTGACATGTAGTCTCTACAAAACAAGAGGTCGTACTGGTGCTTTAGCTTGATGAAACAGCCGGCTATGTCTCGACATATCCATATAGAGGCGTCCGGCGATGATGCAGCACGAGTGCCACTTCTCACTAGCCACCTGGAGCTAGCTAGCCTCGACTCGGATGAAGgtGAAGTTATTTTTGAGAGGTGTATTGGAGATAATGCAAATGATGTTCAGAGAAGTACACAAAGAAAACGAACATGAGGAAGCTGTTGAGGAAGCAGGTTTTGGTTTGTTCCATGGGCTCCTGTTGGTGGTGTGTGGATGGGCCAATGCCAGTGATGCGGTGGAGATCCTGTGTGTTTCCTTTCTGCTGCCTACGGCCCGCTGTGACCTCCATCTCAGCTCCTCAGACATGGGGTTACTGACGGCCAACATTTTCCTCGGAATGATGATAGGTGGGTACATGTGGGGTTACCTGGCTGACCAGAGGGGGCGCCAGAAGGTCTTGGTGATGTCCCTGACAGTGAACGGAGTGTTTGGAGCGCTGGCCAGCTTTGCCCCAAGGTTCTGGCTCTTCCTTCTACTACGGTTCATCAGCGGTGTAGGGGTGGGAGGTTCAATCCCGGTCATCTTCTCCTACTTTTCTGAGTTTCAGCCCCGGCTGAAGAGGGGGGCAATGATAAGTGCTCTGGCCACCTTCTGGATGGCAGGGAATATTCTGGCAGCAGGCCTGGCGTGGTTGGTCATTCCCCGGACCTGGGTCCGCTTTTCTCTGGGTGGGCTGGACTTCCAGAGCTGGAGGCTGTTTGTGGTGCTGTGCTCTGTCCCCAGCCTCACATCGGCACTCATCTTCAGTCTGGCCATGCCTGAGAGCCCCCGGTTCCTCATGGAGGCTGGCCGTGAGACAGAAGCCCTACGTGTCTTCTGCAGGATGTTTGCAATAAACCACAGAGGCAGTCTCAAGACCTTCTCGATTTGTGGGCTGCATATCCCTTctgagaagaaagagagggagactagGAGAGGTGGAACACACACTCTGCGCTTTGTCAACCTCAAACAGTGCCTGGCACCAATAAGACAGCTGTTTGTTGGAGAGTTGGCCTCTAGAAGTGTATGTCTGGTCATCATATTCTACTGCATCTCATTTGGatacTATGGGCTGTGGATGTGGTTCCCAGAGCTTTTCAAGAGAGCAGAGGATGGAGGCTCACCCTGTGCCAATGTGTCTCGCTTACAAAGCCATGACAACCAAAGCTGCTACCCAGTCAAAACGGCAGTATACATGGAGGGCTTTGTCACTGCAGCCTCAAACCTACCAGGGAACATCTTCACCGTTCTCCTAATGGACGTCATTGGAGGAAAGGCCCTGCTTTGTTGCAGCCTATTGttgtccagtgtgagtgtgttcCTCATCTACGAGGTGAAGACGAAAGCACAGAGTCTGCTCATCTCCTGTGTTTTTAGTGGAGTGTCTGTGGTGGCCTGGAATTCCTTGGACGTGTTGGGCACTGAGCTCTACCCCACCCAGCTACGGTCCTCCGCTCTGGGCTTCTTCACAGGAATAGGCAGAGTGGCAGCCATCATGGGTAACATAGTCTTTGGCCAGCTGGTGGATACCAACTGTGCGATACCAGTTCTACTTGTGTCTGCTTTGCTGCTGACAGGGGGGATCACTGCCTTGCGCCTTCCACGCACTAAACAGGCAGAGCTCACCTGAGGCCTCTGTGAAATGAAGTCCAGAAGACACACTTTTTTTCCCTGCTCATAGTCCTCGCCAAGGGTTATTCCCTGAATCTAGTCTACCTAGAGATGCCTTTTTCCTATCATGACCAAAGATTGACGTAGAAAAGATTTTATAAAACGGATGTTGTGAAATGCTGGATTGCACAAGTGCACTTTGAGAAACCGTGTACCTTAATGGTTTCTCAATGATTAACAAGTCATTGACCAGAGCTAATACAGTGAGCTACAAAAGTAtggggacagtgacacatttttttgttgtgtaagtagtcaaaagttgagtatttgatcacatattcctagcatgcaataaTTACATAAAGCTTCTGAATCTACAaagttgttggatgcatttgctgttttggTGGTTTCATTCCTATTGGTCACAAAATAAtcaatggtaaataatgtattgtcattttggatGAACTTTTattgtgaataagaatatgtttctaaacacttctacattaatgtgaatTAGTGTTGGCATGGTATACCGGTACCACAGTAATATCACGGTACCAAAACATCATGATACCAACATTTATAGATTATCGTTTCATACTATCACATTTTTCAGTCCTACCGATCTAAGGCACCGGCGCCTTTTATAAAAATGTGTATCAAGTCAGTTTTGTTTATAAattctgtaaaaaaataaataaatgcaactA

Function

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181543 lncRNA downstream 143031 53690544 ~ 53690992 (-) True G159018
TU181475 lncRNA downstream 207939 53566391 ~ 53626084 (-) True G158952
TU181022 lncRNA downstream 272872 53560850 ~ 53561151 (-) True G158523
TU181010 lncRNA downstream 280264 53553289 ~ 53553759 (-) True G158511
TU181008 lncRNA downstream 280872 53552920 ~ 53553151 (-) True G158509
TU181652 lncRNA upstream 10991 53862659 ~ 53864812 (-) True G159122
TU181668 lncRNA upstream 32470 53884138 ~ 53885912 (-) True G159137
TU181669 lncRNA upstream 37002 53888670 ~ 53889204 (-) True G159138
TU181675 lncRNA upstream 48608 53900276 ~ 53900475 (-) True G159144
TU181676 lncRNA upstream 49234 53900902 ~ 53901266 (-) True G159145
XM_036950407.1 mRNA downstream 343618 53468272 ~ 53490405 (-) True oaz2a
XM_036950373.1 mRNA downstream 437915 53373232 ~ 53396108 (-) True slc25a44a
XM_021564848.2 mRNA downstream 437916 53373232 ~ 53396107 (-) False slc25a44a
XM_021564834.2 mRNA downstream 490461 53312021 ~ 53343562 (-) True crabp1a
XR_005037027.1 mRNA downstream 645155 53182598 ~ 53188868 (-) True LOC118940482
XM_021565135.2 mRNA upstream 39241 53890909 ~ 53893848 (-) True ppib
XM_021565229.2 mRNA upstream 79661 53931329 ~ 53941910 (-) False adpgk
XM_021565221.2 mRNA upstream 79661 53931329 ~ 53941954 (-) False adpgk
XM_021565247.2 mRNA upstream 79661 53931329 ~ 53941954 (-) False adpgk
XM_021565239.2 mRNA upstream 79661 53931329 ~ 53942241 (-) False adpgk
TU180370 other downstream 721732 53032902 ~ 53112291 (-) True snx33
TU177982 other downstream 2416913 51412269 ~ 51417110 (-) False G155610
TU177680 other downstream 2784143 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other downstream 2784143 51039870 ~ 51049880 (-) True LOC110491241
TU177629 other downstream 2862088 50971076 ~ 50971935 (-) True G155281
TU181650 other upstream 5018 53856686 ~ 53857552 (-) True G159120
TU181691 other upstream 117775 53969443 ~ 53971339 (-) False cd59
TU181692 other upstream 117775 53969443 ~ 53971339 (-) True cd59
TU181798 other upstream 405758 54257426 ~ 54268353 (-) True ambra1b
TU182463 other upstream 876631 54728299 ~ 54728860 (-) True G159890

Expression Profile