RNA id: XM_021565183.2


Basic Information

Item Value
RNA id XM_021565183.2
length 2343
RNA type mRNA
GC content 0.46
exon number 16
gene id bbs4
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53905934 ~ 53926823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtagatctgtaccagtacagagggattgGCAAACAAgtgatatatgtttcagtaaaattggatttttagcatttatagaaatagttatcaactgtactgtagGGATGGAACATAAATCGCAAAAAATTGAGGTTtttggtggcagctgcagagaggtatttgggtgtgcgagacttgacatcagaagagttacagggtttGGTGGTGTCCTATCCTTTCAAGttgttggcctgaggtaggactaaatagattaaaatagtggagtagggtggcgTTACATTTTATAATTAAAAAAATTGTGAGTGcagtgttagatggtagggtatttgtttgtttattttttcaaCGAAAGTATAAGGGAGatgtactccagtctagtagctggcggtaatgcaacattttaATGGACGCCAACTGCCGTTAAACCTCATCAAAGAAGAAGAATCCGACCATAGAAGTAAACATGGCAGACGACAATCCCGTAGCGGATGTTCAACTGCCTCCAGCTTCTGAAATCAGGAAGCCTCGTCCTAAAAAAGCGCCTGAGCTCCCTATTTTGGAGAGAAGAAACTGGCTCATCCACCTTCACTACATCCGTAAAGACTATGAGACCTGTAAGTCAATCATCAAAGAGCAGCTACAAGAAACCGGGGGGATGTGTGAATATGCCGTCTATGTACAAGcTTTAATCCTTCGCTTGGAAGGGAAAATCCAGCAGTCACTGGACCTGTTCCAGAGCTGTGCAATACTCAACCCTGGCAGCTCGGATAACCTCAAACAAGTGGCCAGATCCCTATTTCTCCTTGGTAAGCATAAGGCTGCCATAGAGGTTTACAATGAGGCTTCACAGCTCAATGAGAAAGACTGGGAGATCAGCCACAACTTAGGTGTGTGCTACATCTATACCAAAGACTTCAACCATGCAGAAGAGCAGTTGAACATCGCCCTGGAGTTGAGCAAGCACGACCTGACCTACATGATGCTGGGAAAGATTCACCTGCTGGAAGGGGACACTGACAAAGCCATCGACGTGTACAGAAGGGCTGTTGAGTTTTCTCCTGAAAACACGGATCTTCTCACCACTCTTGGCCTGCTATACATGCAACAAGGCAAATATCAGAAAGCCTTTGAACACCTTGGGAATGCCCTGACGTATGACCCCAACAACTTTAAGGCCATCCTGGCAGCCGGCAGCATGATGCAGACGCATGGGGACTATGATGTTGCCATGAATAAGTACCGCGTGGCAGCTTATGCTGTACCTGAGAGCTCACCCCTCTGGAATAACATTGGCATGTGCTTCTTCGGAAGCAAGAAATATGTGGCGGCCATCAGCTGTCTGAAGAGGGCCAACTACCTGTCTCCGTTTGACTGGAAAATCCTGTACAACCTGGGCCTGGTGCATCTCACCATGCAGCAGTATGCCTCAGCCTTCCACTTCCTCAGTGCTGCCGTCAACCTGCAGCCAAAGATGGCAGAGCTCTATATGCTGCTGGCAGTTGCACTTACTAATATGGATGACGGGGAGAATGCCAAGCGATCATACGAGCAAGCAGTGTTGTTGGATGACTGTAACCCCTTGATCAATCTGAATTTCGCAGTCCTGTTGTACAATCAAGGAGACAAAAAAGGAGCCACAGATCAGTACCTGGAGATGGAGAGTAAAGTGATGGAAAGCAGCCATAATGCAGAATTCGACccagagCTCATTGAGATGGCCCAGAAGTTGGCATCTGCTCTCCAGGTGGGAGAGACCTCGGTGTGGACCAAGCCAGGTAAGGACTCCAAAGTCAGTCAGCGCTCCAAGACCACGTCCCTGCAGCCCCTGGGCACCAACCAGGCCCTTGGGCAGGCCATGTCTTCAGCTGCCAGCAAAAGCATCCAGCtagctgcagGCTCTAAGGCTCCACCCAAGTCCACCTCCACGCCGCTAGTTGAAGAGCATGATGTGGAGAATGCCCCTTCCCCTCCCCTAGGGGACCCTGAGTCAGAGGATCCCAAAGCCAAAGAGAAGAAGAGCAAGTCTAAACCTGTGGCTGAGTAGGGTCCATGATCCACTGCTATGTGAAGCGAAGCAATGTATAGTTGAATAGCACATTACAGTTGAATAGTATGTACTGTATTGGGGTTGGATTGTTAAttgcaggtttaaaatgttttgaATAAAAGTAGGGGGAGATGTTACAGTGcatacagaaagtattcagaccccttgactttttccacattttgttaggttacagccttattctaaaatgtattaaatcgttttttccctcatcaatctacacacgataccccataatgacaaagcaaaaacagtttttattttattttagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181245 lncRNA upstream 16696 53888904 ~ 53889239 (+) True G158732
TU181244 lncRNA upstream 17093 53888544 ~ 53888842 (+) True G158731
TU181218 lncRNA upstream 80212 53825402 ~ 53825723 (+) True G158707
TU181217 lncRNA upstream 81159 53824537 ~ 53824776 (+) True G158706
TU181126 lncRNA upstream 215532 53690202 ~ 53690403 (+) True G158618
TU181207 lncRNA downstream 42635 53969454 ~ 53970875 (+) True G158696
TU181294 lncRNA downstream 88936 54015755 ~ 54016247 (+) True G158776
TU181299 lncRNA downstream 100839 54027658 ~ 54028060 (+) True G158781
TU181301 lncRNA downstream 102805 54029624 ~ 54029860 (+) True G158783
TU181303 lncRNA downstream 104996 54031815 ~ 54032061 (+) True G158785
XR_005037059.1 mRNA upstream 7744 53894146 ~ 53898191 (+) False LOC110491599
XR_002468855.2 mRNA upstream 9529 53894134 ~ 53896406 (+) False LOC110491599
XR_002468853.2 mRNA upstream 9529 53894173 ~ 53896406 (+) True LOC110491599
XM_036950532.1 mRNA upstream 15197 53867516 ~ 53890738 (+) False snx22
XM_021565156.2 mRNA upstream 15197 53872926 ~ 53890738 (+) True snx22
XM_036950598.1 mRNA downstream 15034 53941853 ~ 53968536 (+) False kcnj11l
XM_036950616.1 mRNA downstream 15034 53941853 ~ 53968536 (+) False kcnj11l
XM_036950628.1 mRNA downstream 15034 53941853 ~ 53968536 (+) False kcnj11l
XM_036950603.1 mRNA downstream 23906 53950725 ~ 53968536 (+) False kcnj11l
XM_036950612.1 mRNA downstream 31550 53958369 ~ 53968536 (+) False kcnj11l
TU178397 other upstream 2081753 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2484813 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2488817 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2583502 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2738761 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 94789 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 426164 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 801477 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 2019324 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2318225 56245044 ~ 56252598 (+) True G161687

Expression Profile