RNA id: XM_036950596.1


Basic Information

Item Value
RNA id XM_036950596.1
length 2093
RNA type mRNA
GC content 0.49
exon number 6
gene id kcnj11l
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53941853 ~ 53969163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTCAGGTTACATTTGACATTCTGCAACAGCGCCAGTACAATGGACTGGGGACATACGTAGCTCTAAAATCATCTGGGTTATTTTGTTCAATTTATTTTCCAAAAGACTCACTGCCACTTATATCGAGCAATATGCTGGCCCGGAAGGGCCCACTACTACCGGATGGGTTCTTTCTGACCCGACTGGCAGAGAATGCCAAGCAGCCCAACCAGTTCAAAACCAATTCCCAACGGGCCAGGTTTATAACCAAGAATGGATCCTGTAATGTGGCCCACAAGAACATTCGCGAGCAgGGCAGATTCCTTCAGGATGTCTTCACGACTATGGTGGACCTAAAATGGCATTACTCCCTCCTCATCTTCACCTCGGCCTTCCTCTGCTCATGGATGCTCTTTGCCATGATGTGGTGGCTCATGGCCTTTGCCCACGGTGACTTGGAACCCCGTGACCCAAACGGGGAGCCCGGGCCCGTGCCCTGTGTCACTGCCATTAACTCCTTTACCTCtgccttcctcttctccatcgAAGTGCAGGTGACGATAGGTTTCGGGGGGCGAATGGTGACAGAGGAGTGTCCGCTGGCCATCATGGTGCTGATCGTCCAGAACATTCTCGGGCTGATTGTCAATGCTGTGATGCTTGGCTGTGTCTTCATGAAGACTGCTCAGGCTAACAGGCGAGCAGAGACCCTCATCTTCTCCCGGAACGCAGTGATCGCACCACGCCAAGGCCGGCCCACGTTCATGTTCCGCTTGGGTGACCTGCGGAAGAGCATGATCATCTCGGCCACTATTCAACTACAGGTGATCCGCCGGACGGTCACCACTGAGGGTGAGGTGATCCCTGTCTGCCAGCTGGATATCCAGGTGGAGAATCCCCTTAGGAGCAACGGCATCTTCCTGGTGTCCCCTCTCATCATTAGTCACACCATAGAACGTGGCAGCCCACTCTATGAGGTCTCCGCCCACTCCCTGGCCACAGAGGACATGGAGATCATTGTGATTCTTGAAGGTGTGGTGGAGACCACAGGTATCACCATGCAGGCGCGTACTTCCTACACCCCCGAGGAGATTCTGTGGGGCCGGCGTTTCGTTTCCATCATGACAGAGGAGGATGGCCGCTACTCAGTGGACTACTCGAAGTTCGGGAACACGGTCCCTGTGCGCATGCCCGCCCTCAGCGCCAAGGAGCTGGACCAGATACGAGGAGTGCAGGAGGGGGACGTGCCTGAAGGCCAGCTACAGGGCTGGGGATTGGTCAGGGCTGGCAGGGGAGGGTTCCGAAGAGGGGGACGGACTTGTGATAGCAGCTCAGCCTCCCGGCCCTGGTATGCAGCACAGCCAGAGAAAGAGGAGCATGTGAAAGCAAAGGAGAAGAATGGGCAGAAGAAAACAGTTCAGCTGGAAGAGATTGGTCGAAAGATTGAGGTGGAAGGTCTGGGAGACTTTAGTGACAGAGAATAGTAAAATTGATGCCAGAAAATAAGGTTCATGTATTGATATAATGCTCTAGTGAAATGATTACCTTTGTTTTCATTTTTATTTGTGTAAATAGTTGTTGACTTAGGACTTTATTCAGTCCACACCACGGAAGTTTAGTTTTACAGCTGATTGAAATTTAAAGATAATGTTCCTGCAtaagcggagactgcattcatggtaaacgtTGAATATGTTggctcaatcagaaattacctttacatttataTTGTGGGATCTGTAACGCCTCAGctttacagattgaatagaggccTTAGTCAACAGTATTGTCATCGTTATTTTACCTTAACATAAATGAAGTTAAATTGTAAGAAAGCAAAGTGTAGACTCAAGTAGCTTATTATAATGGAGAGGGTTCCCAGAACCCTTTTTAGATCCCACTGCATCCCACATAATGCCACGGGATGTTTttaatatatgtatttatttgtatttattgataACCAATTTTTTGATGTGAACATTAAATTATATTCCAAATGTTATGCAAACAACTAGTGTAATTTAATTTCGGGCACATTATTGGCTGGTCAACCATTCGCAGTGCTCCGGTGCATAGCAACTTTCCCTACCCACATCCGTCCCGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181245 lncRNA upstream 69922 53888904 ~ 53889239 (+) True G158732
TU181244 lncRNA upstream 70319 53888544 ~ 53888842 (+) True G158731
TU181218 lncRNA upstream 133438 53825402 ~ 53825723 (+) True G158707
TU181217 lncRNA upstream 134385 53824537 ~ 53824776 (+) True G158706
TU181126 lncRNA upstream 268758 53690202 ~ 53690403 (+) True G158618
TU181207 lncRNA downstream 291 53969454 ~ 53970875 (+) True G158696
TU181294 lncRNA downstream 46592 54015755 ~ 54016247 (+) True G158776
TU181299 lncRNA downstream 58495 54027658 ~ 54028060 (+) True G158781
TU181301 lncRNA downstream 60461 54029624 ~ 54029860 (+) True G158783
TU181303 lncRNA downstream 62652 54031815 ~ 54032061 (+) True G158785
XM_021565199.2 mRNA upstream 32338 53905934 ~ 53926823 (+) False bbs4
XM_021565183.2 mRNA upstream 32342 53905935 ~ 53926819 (+) False bbs4
XM_036950566.1 mRNA upstream 32346 53910366 ~ 53926815 (+) False bbs4
XM_021565207.2 mRNA upstream 32346 53910438 ~ 53926815 (+) True bbs4
XM_036950560.1 mRNA upstream 32348 53910092 ~ 53926813 (+) False bbs4
XM_021565393.2 mRNA downstream 131604 54100767 ~ 54191587 (+) False dgkzb
XM_036950707.1 mRNA downstream 142805 54111968 ~ 54191587 (+) False dgkzb
XM_021565401.2 mRNA downstream 145810 54114973 ~ 54191587 (+) False dgkzb
XM_021565383.2 mRNA downstream 148144 54117307 ~ 54191587 (+) False dgkzb
XM_036950710.1 mRNA downstream 163670 54132833 ~ 54191587 (+) False dgkzb
TU178397 other upstream 2134979 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2538039 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2542043 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2636728 51321796 ~ 51322433 (+) True LOC110501653
TU177155 other upstream 2791987 51165415 ~ 51167174 (+) True G154859
TU181296 other downstream 52445 54021608 ~ 54021904 (+) True G158778
TU181970 other downstream 383820 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 759133 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 1976980 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2275881 56245044 ~ 56252598 (+) True G161687

Expression Profile