RNA id: XM_021617318.2


Basic Information

Item Value
RNA id XM_021617318.2
length 1366
RNA type mRNA
GC content 0.42
exon number 3
gene id cd59
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53969443 ~ 53971367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGAGGAGCTGTGATTGACAGAGAGCCTTTGTACTGGACAAAGAAGTCTTCATATTAGATAGATCAGCCTGACTGCTGCCGGTCATTTCATGCTGAACTTGGAGGAGGCATAACGCTAATCAATAGAGTAGGTCCCTTTGTATTCTTGAAGGGTATCTGGGAATGGTTAAAACTTTACATACTGACTGCTACAAGAAGGATACAGCTTGATGATTCATGTGTTTGATCTAGTTTGTCTGCAGATTTGACATTTTCCTAAAGAATACGGTCTTATATTTAGGGGACATTACAAGGCAGCAAAAATGAAGcgctcccttgaactttgcttGGTGGTCTGTTTTGGGATACTCGATTTGGgctGTGCACTTCGTTGCTTCAAGTGCTCCGATTACACAGGGCGCTGCGAAAATGTTCAAGACTGCACTTATGAAGATTCCTGTTTATCTCTGAGTGAAAGAGGTGGGAAGACAATTCGACAGTGTATCAGATACACAGACTGTGACAATTCTCGACTTTCCCAGATGTTCCCTGCCGTCTCCGGGTTCACGTACCGGTGTTGCAGCAGCAACCAGTGTAATAGTAGTACCACTATTGCCACGAGAGGGCCAGTTTTCGCTTTGATGGGGTCACTATTGGTCTTCTGGTGGTCCTCACTGTGAGCTCCAACTGCCATGCACAGCTGACGCAGAGCCCTCAATGGAGCTGGAGATTGCAGTCAGTAATATGattttatgttgttgttgataGTTACATGTGTTGTTTAAATTGTGGATGAACAATGTCCGACTTAGCTGCAGTCTTTTCTGTTTTCTCAAATGCTTTTTTTCCCCCAGTGAACTAACCTAGAGGAACACTCGAAATAGAAATCTACATGTTTATTGATTTTGGTTGTTGTAAATTGATACTTGACAGTTATGTGCATATTTGGGTTAGGCCATTCGCTTTAGAAGCATCAGGCTAAGACAACCTCGTTCATCCAATAATGAATAACCGGGAACATTGTACATGCTATCCATACTGTTGTCTGCAGGAGGGTTTCCTCCCACTTTATGTACACTTACTACAGCCTCATTATACCATGATGATTAATCCATTTCACTAGGAACGCAGACTAGTCGTGAAGATAGGCTGCACAGATGGGATGGGATATGCTAGTAGTCTATTCACCCACCTAGGCACCTACTCACCCAAGTCAAGACGGGAAAAAATGTAAGCTGAACATATATTTCCCCAGTGTTTTAAGTTGTGATAAGAAATATGTTTCaataacatttaaaaccatgttaaAGGTTGTGAAAATTGTCAATCAGTTTTATTCTCACTTTTAGAAGACTCACCCAAACCAATAAAATGACCTACCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181702 lncRNA downstream 34997 53930055 ~ 53934453 (-) False adpgk
TU181703 lncRNA downstream 34997 53930055 ~ 53934453 (-) True adpgk
TU181689 lncRNA downstream 46490 53914985 ~ 53922960 (-) True G159157
TU181677 lncRNA downstream 66550 53902694 ~ 53902900 (-) True G159146
TU181676 lncRNA downstream 68184 53900902 ~ 53901266 (-) True G159145
TU181735 lncRNA upstream 62013 54033380 ~ 54033628 (-) True G159196
TU181736 lncRNA upstream 62345 54033712 ~ 54033918 (-) True G159197
TU181742 lncRNA upstream 87051 54058418 ~ 54058682 (-) True G159201
TU181836 lncRNA upstream 213741 54185108 ~ 54186210 (-) True G159290
TU181838 lncRNA upstream 221476 54192843 ~ 54193563 (-) True G159292
XM_021565239.2 mRNA downstream 27209 53931329 ~ 53942241 (-) False adpgk
XM_021565221.2 mRNA downstream 27496 53931329 ~ 53941954 (-) False adpgk
XM_021565247.2 mRNA downstream 27496 53931329 ~ 53941954 (-) False adpgk
XM_021565229.2 mRNA downstream 27540 53931329 ~ 53941910 (-) False adpgk
XM_021565135.2 mRNA downstream 75602 53890909 ~ 53893848 (-) True ppib
XM_036950639.1 mRNA upstream 6561 53977928 ~ 53995359 (-) False prdm11
XM_021565282.2 mRNA upstream 6561 53977928 ~ 53995578 (-) False prdm11
XM_021565290.2 mRNA upstream 6561 53977928 ~ 53995578 (-) False prdm11
XM_021565298.2 mRNA upstream 6561 53977928 ~ 53995578 (-) False prdm11
XM_021565306.2 mRNA upstream 6561 53977928 ~ 53995578 (-) True prdm11
TU181650 other downstream 111898 53856686 ~ 53857552 (-) True G159120
TU180370 other downstream 857159 53032902 ~ 53112291 (-) True snx33
TU177982 other downstream 2552340 51412269 ~ 51417110 (-) False G155610
TU177680 other downstream 2919570 51039870 ~ 51049880 (-) False LOC110491241
TU181798 other upstream 286059 54257426 ~ 54268353 (-) True ambra1b
TU182463 other upstream 756932 54728299 ~ 54728860 (-) True G159890
TU184134 other upstream 1964304 55935671 ~ 55943565 (-) False LOC110491905
TU184572 other upstream 2329988 56301355 ~ 56302095 (-) True G161823
TU185501 other upstream 2855929 56827296 ~ 56830576 (-) False G162657

Expression Profile