RNA id: XM_021565393.2


Basic Information

Item Value
RNA id XM_021565393.2
length 5003
RNA type mRNA
GC content 0.47
exon number 33
gene id dgkzb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54100767 ~ 54191587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACATTTGGACGAGCTCCCTCTGCGGTGGACGTGTCTACGAGAGTGCGTGTGCCGCTTTGGGAATCGTATTTGCTTTTTTTTCAAAGATGTGTCACTCCAGTCAGCCTCCACACATTGACCAGATGGCGACCACGAGGTTAGAAGAGATGATCGATGAGGAGGATATTTTCCCTGAACAACAAAAGCCAAATTAGTATTTTATATAGGAACTACATAGAGTTTTGTGGAAAAGGCGTCCGGGAAAGTACGGAAGGGAGCTGTCAAAAATGACAACGGAAAACCAGCTGGACGAGTTCATGCACCTCGCGCTAAGAAAACGGCTATCCTACAGgAAAGCTATCGCTAAGTCAGGCCTCCAACACTTGGCAGCCCAGCCCAGCGCCTCAGCCCCAGGCAAGACTGACCCACTTCGAGAGAACTGCAACACTGTCGACTGGAGTGATAATGCCCAGTTTGGGGACCATatctggtttgagaccagtgtcTCAGGAGACGTCTGTTACGTTGGAGAGCAGTACTGCGTCACAAAGACAATGCAAAAGTCCGTGGCGAGGAAGAAATGTGCTGGCTGCAAAATAGCAGTCCACACCATGTGTATCGAGCAGCTAGAAAAGATCAATTTTAGATGTAAGCCATCGTTTAGGGAACCCGGATCTCGAAATGTTCGAGAGCCCAACGTTGTCCGTCACCATTGGGTCCACAGGAGGCGCCAGACTGGGAAGTGTCGACAGTGTGGGAAGGGTTTTCAACAGAAGTTCTCATTCCATAGTAAAGAGATTGTTGCAATCAGCTGTTCTTGGTGCAAACAGGCATATCACAACAAGGTGACGTGCTTCATGCTACAGCAGATCGAGGAGCCTTGCTCGCTGGGAGCTCACGCCTCCGTCATAGTGCCGCCCACCTGGATCATCCGGGTCCGCAAACCACAGACATCATTAAAATCAAGTAAAAAGAAGAAACGCACATCTCTGAAAGGGAAGCCAAGTAAGAAGGTAGTAGAGGATGGTCGATGGAAGCCCTTCATAGTAAAGCCTGTTCCCTCGCAACTCATGAAACCTCTGCTGGTGTTCGTCAACCCCAAAAGTGGAGGCAACCAGGGAGCCAAGATCATCCAGTCGTTCATGTGGTACCTCAACCCCCGACAGGTGTTTGACCTCACCCAGGGAGGGCCCAAGGAGGGGTTAGAAATGTATTCCAAAGTGCCCAACCTGCGGATTTTGGCGTGTGGAGGGGATGGAACAGTGGGTTGGATCCTGTCTGTCCTGGACCAGCTCCAGTTGAACCCTGCGCCTGCCGTGGCTGTCCTGCCCTTGGGGACGGGGAACGACCTGGCCAGGACTCTCAACTGGGGAGGGGGTTACACTGATGAGCCAGTGTCTAAGATCCTGTCTCATGTGGAGGATGGGAACGTGGTGCAGTTGGATCGCTGGAACCTCCTGGTGGAGCCCAACCCAGAGGCCGTTCAGGAGGAGAAGGACGAGCACCAGACAGACAAGCTCCCAATTGATGTCTTCAACAACTACTTCAGCCTCGGCTTCGACGCTCACGTCACACTGGGGTTCCACGAGTCCAGAGagGCCAACCCAGAGAAATTCAACAGCCGTTTGCGGAATAAAATGTTCTATGCAGGGACGGCCTTCTCTGACTTTCTGAGTGGCAGCTCCAAAGACCTTGCCAAACACATTAAAGTTGTGTGTGACGGCACAGACCTCACCTCCAAAGTCCAGGACTTGAAGTTGCAATGTCTTGTGTTCCTCAACATTCCCAGTTACTGTGCTGGCACCAAGCCGTGGGGTCACCCCAGTGAGCACCTTGATTTTGAGCCGCAAAGACACGACGACGGCTGTATCGAGGTCATCGGATTCACCATGACCTCTCTGGCCACTCTGCAGGTGGGCGGTCACGGCGAGAGGTTGAACCAGTGTAAGGAAGTGACCCTGACCACCTACAAGTCCATCCCCATGCAGGTAGATGGCGAGCCCTGTAAGCTGGCCCCTTCCGTCATCTACATCAACCTGAGGAACCAGGCCAACATGGTGCAGAAGACCAAGAGGAGGATCTCCATGCCCCAGCTCAATGAtcagcaGCCGGTTCCTGAGAAGCTGCAGATCAGAGTGAGCAGGATCAGCATGCACGCCTATGAGGCCCTGCACTATGACAAGGACAAGCTCAAAGAGGCCTCTATTCCACTGGGCATCATCACGGTCCCAGGAGACAGCGATCTGGAGAACTGCCGTTCACACATTGAGAGTCTACAGGATAGTCTGGAAGAGGAAAGTGATGCTGTGAAATCAGCGAGGCTGTCGTCACAAAAGCTTTCCCCCAAATGGTGCTTCCTTGACTGCACAACTGCTGATCGATTCTATAGGATAGACCGTGCTCAGGAGCACCTCAACTACGTGACGGAGATCTCCCAGGATGACCTCTACATCCTGGACCCGGAGCTGGTCATCAAGGAGACGGTGGGCACCTCGCCGGGCATGCCCGACCTGGTAGACTCGTACGGGGAGTGCAAAACGCCAGAATCTCGCCAGTTTACcttcccatcctcctcctcctctcccacctcctccccaGGACCCAGTATCAGGGAGTCCCAGAGGAAGAGGGTGTCCAGTGACAGCTCGGTGACAGAGGCCCTAGCTCACAGCAGCGACTCTCAGGCCTCCTCCAAGACCGGCCAGTGCAGGAGAGGCACTAAAATTGTGAATGTTCATCGGCCCCATACAAGTATTGCTGATTTCAGACCCATGCTTAGTTCTGGAAGTGCTCTGTCGTGTGATGCTGAAAAAGTAACTGAGTTAATTGAGTGTGTGAAGACGGAAGATCTCGAAAGGCTCACAGAGCTCCACAAACAGGGGGCAGATATTTTCGCGCAGGATACTTTGGGCTGCACCTTACTCCATTACGCGGTGGAGGTGGGCTGCAAGGAGATTGTTAAGTACATCATAGACAACGCACCTACCACTCTCCTGGATGTCACAGAAAAAGAGACAGGGGAGACGGCTCTCCATAAAGCTGCGTTCACGCGTCAGAGGACCATCTGCCACTACCTGGTGGAGGCCGGGGCTTCCCTCATGAAGACTGACCTTCAGGGTGAGACGCCGAAGCGACGTGCGGAGAAGGCCAATGACCAGGAGCTGGCGGAGTACTTGGAAAACCGCCAGCACTACCAGATGATCCAGCGAGAGGACCAGGAGACTGCCGTTTGATGGTCCCACTATTTACCGCAACCTGCAccacgctctctctttctccctctccgttTGCCATACCTAACAGTAGGAAGTTCTGTACTGGGTTCAAGGGGGGGGTGGTGGTAGGTGTCTTCCCGCTCTAACAGACCAGGCTAATTACACCATCGAAATAGGATGACTTTTTCTATGAGCTACACTCCCAGTATGGGTCGAAGTCTAGAGAGCCAGTGGAGGCAGGTCTTCCTTTCATCCGCTTGCTAGTGATGCTTCAGTTTGACTAGAGTGCTATGTGAAAAGAGTGCATGAATGAACACCGCTTTTCTTCTATTGCGAATGGGTCCAAGTCCGCTACGACACAGCAAGCGATTGTAAATGAAAGGGCAAATGAAAAAACAACAGCTTTTTGGGGTATTTTCAGGGCTGGAGTAACTGTATCTGAATGTGGCTTTCTGAACCTCGTATCTTTCTCCATATGCAATGGCTAGGTATCTATAGGAATGTGTAGCGTTTGAGTGAGTCATTGAAATGGATGGAGGTTGTTTTTAACCAGGGATACTGTTTATGTAAGTGTGGGCTTGAGATATGATAGATGCTTTGCCATATTGTATGAAGGCTCATTACTTTCCTTTTTGAATTCTCGTGACCTCTGGATGTGCTTGTTTACTCGAATGGCAGTATGTTTGCTCTGCTATTGGATATGTAACTTCTAACTTATGTCGATCACTGATAAACCGCTATATTTAAGAAATGCTGTACTATTTATAGAGAGAGCTGTTTGCGTTTTTGCTTATGATCAAATATTTTAAAAGCAGGCATCCTAAATAACTCATTATTAAAAGCTGGTTTTGCACTGCCActgttattacaaaaaaaaatgctttgtATTTCTCTATGTGGCTTGAAATTCCTCTTGGTGCATTACATATAACAGTTCTTAGATATTTATATACCACAGCTTTTAGATATTTTTATGCACTGTGTCCATGTTTGTTACATACAATGTAAATTTGATGTATTTTTTCCAAATGTGTACTTTGCAATGTATAGTTTTTCTGTGTATAGGTGAAACGTTCTTATTTACGACATGCTACACAAGTGCAGTAAGAATTCCACACAAAACAGCTAACAGATTCCCCAAAATGATCACAAATCACAAATAAACTTCTGTGTCCCATTCTTTAATGCCACATCATTACTACTTTAGTCAACTCTTTGTATATTTCATATATTAGCCAGTTTATGAAGAGGAGAATGTGAGGAGAATGTTCAGTTCACTTGATTAGCCTTAATCAGTAATTTGTCTCGCGTTCCGTTGTCTCAATGAAACTTAATTAAACACTATTTATTGTATGTGCAACCTGACTGCTGAGTCAAGTATCTTACATCAGTTTCTTTTTCTCTTTACAACTTATACAAGTATTATCAGAAACATGGCTTGATTATTGTGAAATATAGATTGCTTTTATCAATACTTAGAAATCTTTGCAAGAACTGCCTATTATTGGTTTGCTTTTAAGGGGTTATGAAAAGTATACGTGTGTGTTATCAATGCTTTGTTTTGAGTTGCTGTGCAATTCAGGGTTAGAGAATTAGCATCAAGCAATTAAGAATGACTACTGCTGAACTGTCCATTGTAACTACAGAGATTTCAAAAGATCATTAATTTTGTAATTTTGAACAGCGATCAGAGTAATGGACAGACCTGTATGAAATGTATTCAAAAATATTAGTTGTACTGTATATTTGCTCATCAAGCCTGTTTGTTACTGTTTGTTTGGAGAAAAATAAAACTTTAAACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181347 lncRNA upstream 13976 54086475 ~ 54086791 (+) True G158829
TU181336 lncRNA upstream 25584 54074964 ~ 54075183 (+) True G158818
TU181303 lncRNA upstream 68706 54031815 ~ 54032061 (+) True G158785
TU181301 lncRNA upstream 70907 54029624 ~ 54029860 (+) True G158783
TU181299 lncRNA upstream 72707 54027658 ~ 54028060 (+) True G158781
TU181362 lncRNA downstream 255 54191842 ~ 54192170 (+) True G158839
TU181364 lncRNA downstream 1023 54192610 ~ 54192886 (+) True G158841
TU181410 lncRNA downstream 22025 54213612 ~ 54216497 (+) True G158887
TU181462 lncRNA downstream 98511 54290098 ~ 54290351 (+) True G158939
TU181465 lncRNA downstream 100387 54291974 ~ 54292241 (+) True G158942
XM_036950596.1 mRNA upstream 131604 53959161 ~ 53969163 (+) False kcnj11l
XM_021565260.2 mRNA upstream 131710 53959138 ~ 53969057 (+) False kcnj11l
XM_036950598.1 mRNA upstream 132231 53941853 ~ 53968536 (+) False kcnj11l
XM_036950616.1 mRNA upstream 132231 53941853 ~ 53968536 (+) False kcnj11l
XM_036950628.1 mRNA upstream 132231 53941853 ~ 53968536 (+) False kcnj11l
XM_021565510.2 mRNA downstream 173331 54364918 ~ 54455954 (+) False itga11b
XM_021565519.2 mRNA downstream 173331 54364918 ~ 54455954 (+) False itga11b
XM_021565528.2 mRNA downstream 216071 54407658 ~ 54455954 (+) True itga11b
XM_021579388.2 mRNA downstream 282436 54474023 ~ 54486909 (+) True cln6b
XM_021565562.2 mRNA downstream 300138 54491725 ~ 54504596 (+) False calml4b
TU181296 other upstream 78863 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 2276585 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2679645 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2683649 51412266 ~ 51417118 (+) True rl28
TU177860 other upstream 2778334 51321796 ~ 51322433 (+) True LOC110501653
TU181970 other downstream 161396 54352983 ~ 54353388 (+) True G159415
TU182462 other downstream 536709 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 1754556 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 2053457 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 2856727 57048314 ~ 57053642 (+) True G162130

Expression Profile