RNA id: XM_021565528.2


Basic Information

Item Value
RNA id XM_021565528.2
length 4602
RNA type mRNA
GC content 0.51
exon number 29
gene id itga11b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54364918 ~ 54455954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGAATGGACTTTAAGTCCTTTACCGAGGTGAGCTTGTGGAAAGGAGCATGAATTAAATCCGTCTCCAGCTGGTTGTTTTTGTTGAACTATTAATGTGATCAATTATAATTTGTAAACCTAACAGTTTAAAAGCTGCTAGCTTAACTTTTAGTCGGGCGTCTTGGATGAGAGGGTTTGATCGTCAAGATGGCCGAGATTGAGTAACGTTCCAGGTCTTCTTACGGTTTCCAGACTGGAAGTCTTTCAGCCATGCGGAATATCTTGCGGTTCTTCCAGGATTGCAAAATATTTTGCTCTATGAAGTCACAGGCTACTAGTTGGAGCTCCCTTTGAAACCAGTGGCCAACACCAGACAGGCGATATATACAAATGCCCGATGGACACCAGTCCCAACACCAACTGCACTAGACTCAACCTAGGAAAGGTATCCCTGAACAACGTGTCAGAGCGCAAGGACAAAATGAGGCTGGGCATGACACTGACCTCCAACCCTAAGGACAACAGCTTTGTGACCTGTGGTCCTCTGTGGTCGTACGAATGTGGAAGCTCCTACTACAGCACAGGCATCTGCTCCAGGGTTAACGAAAGCTTCAAGTTTTCCAAAACCATCTCGCCGGCCTTTCAGAGGTGCGAGACCTACATGGACATAATGATTGTGCTGGACGGGTCCAACTCCATCTACCCCTGGTATGAGGTGCAGGACTTCCTCATCAACATTCTGCAGAAGTTCTACATTGGGCCAGGTCAGATCCAGGTTGGAGTGGTGCAGTATGGGTCAAGGGTGGTCCATGAGTTCACCCTGAATGACTTTCGCTCTGTGGAGGAGGTGGTAGAAGCAGCCAAGACCATCGACCAacggggaggggaggagacacgCACGGCCCTGGGCATCAATGTGGCACGGACGGAAGGATTTAAACGGGGAGGTCGGAAAGGGGCTAAGAAAGTGATGCTCGTGATCACGGATGGTGAATCCCACGACAGCCCTGACTTGCAGAAGGCCATGGAGGACACTGAGGCGGACAACATCACCATGTATGCCATCGCTGTATTGGGCTACTACAATCGGCGCGGGATAAACCCAGAGGCCTTCTTGAAAGAGATCAAGTATATCGCCAGCGATCCTGACGACAAACACTTCTTCAATGTGACTGATGAGTCGGCGCTAAAGGACATAGTGGACGCCCTGGGAGAGAGGATCTTCAGTCTCGAGGGAGTGAACCCTAATGGGACGGGGTTCGGTCTGCAGATGTCTCAGGCAGGCTTCTCATCACACATAGTGGAGGATGGCATATTGGTGGGGGCCGTGGGGGCCTATGACTGGAACGGGGCTGTTCTGAAAGAGACACGTCATGGGAAGGTAGTCCCACCCAAGTCCTCCTATCTGGAAGAGTTCCCAGAAGAACTGAAGAACCATGGGGCCTACTTGGGTTACACAGTAAATTCAGTGGTGTCAGCCAAAGGCAGGCAGCTCTATGTTGCTGGAGCCCCTCGCTTCAACCACACAGGCAAAGTCATCATCTTTACCCTGAGAAACAATGGCAACCTCACCATCCTACACTCACTCAAAGGCCAGCAGATTGGGTCATACTACGGGAGTGAGCTAGCTCCTCTGGACATCGATGGGGACGGTGTGACAGACTTCCTCCTGGTGGCAGCGCCCATGTTCTTCAGTAAGGGCTGGGAGAGGGGCAAGGTCTACATCTACAGGGTGACTCAGCAGAACCATTTCCTTTTGGAAGGGACACTTGAGGTCTCCGACCAGTCCCAGAACTCTCGTTTCGGTGGAGCGATGGCCCCTATCCCTGATATGAATGGTGACTCGTACAGTGAGGTAGTGGTGGGAGCTCCTCTAGAGGACGATCACCAGGGGGCCATCTACCTGTTCTACGGCCAGCTCAGTGGCATACAACACAAATACAGACAGAGAATTGGAGCAGCAGGCTTCTCTGCTGGTCTGCAGTATTTTGGCCGCAGTGTTCATGGGATGATGGATGTCAATGAAGACGGGTTGGTGGACTTGGCAGTGGGCGCATTGGGTGCAGCAGTACTGATCTGGTCTCGCAGTGTGGTGCGCATCCAAGGAAAAATCACTTTTGAACCGGAAAAGATCAACACCTTCAACAAGGACTGCCGCAGGGGAGGCAAGGACGTCACCTGCATGTCTGCCATCGTGTGTATCAGTCTGGATGCCAGGACTCGGATGCAGAGCCATGGAGTGGGTGTGTGGTACAGGGTGCTGATAGACGAGAGGAGGCACCCTCCCAGAGCATCGCTGGACGACAATGACAGACAGCAGCAGTCAAGGAATCTGACACTACAACATGGGGAGGAGTCCTGTGAACATGTCCACTTCTATGTTCAGGAAACTGCAGACTACGGCCATCCCATAGTGTTTGTGGTGAAGGTAGGTCTGCAGAGTCCAGACCAAGGCCCGGTGCTGGACCACGGCTGGCCCACTACCTTTAGGACTGAGATCCCCTTCTGGAATGGCTGCGAGGGGGATGACAGCTGTGTCCCTGACCTCATCCTGCACAGTCGGACAGACCTTCTAGACCGCAGGCAGTTCTGTAGGCCAAGGGAGCGGGCCGCATGGGCGCTGTGTCACCACCAGGGGGCCTCGGTGGCCTCGGAGCGAGTGGTGGAGGCATCACGCAGGAGGCTGGTGGTAGAAGCTCGTCTGGAGAACCAAGGAGAGAACGCCTATGGCACCACGCTCAACATCTCCCACTCCCACAACCTGCTCTTCTCCAGTCTCATAGTCAAGGACCACTCAGACATCCAGATTGAATGTCGtgctgaggacagggagaggaacgATAGGACCTGCAATGTCAGCTCACCCTTTATGAGGTCACTGACCCAGGTGTCTTTCCGGCTGGAGTTTGAGTTGAGTCACTCTGTCTTCCTGGACCATGTGAGGGTTGTCCTGCAGGCTGCCAGCGATGGGGAGGAGATGAGCCCAGAGGataacatcaacaacatattTCATCCTCTGAAGTACGAGGCAGACCTCCTGTTCACAAGGGACTCCAAGCCTCCTCGTTTTGAGATCAACTCAGACCACTACCGGAACAAACCCGGCAGCAGTGGTCCAATGTTTAACCTTACTTATCACATACAGAATCTGGGCTTCTTCCCAGTGACAGACTTGCAGTTCGCTGTTGACGTGTTTGCTGTTACAAAGAGTGGTAACCATCTCTTCCAGATTGCCAATATCGACACTGACCAGgcGGTTAGCTCTAACTGTGTCCTCCCACATCACATGACTCCAAACCATGTTTTCCCTGAAGATCTCTCACACGTCCCACAGCTGAATCACTCCAACAGCATGACGTTGCCAATGCAGTGCAGACTCAACCTGCCTGCGTACAGGGAGGTCAGAGTGACAGTCAGGGGGCGCCTGCACCTCCAAGCTCTCTTTGCTGTGAAGTTTAAAACTCTGGAGTTGGTGACAGCAGCCTCCATAGAACTGAGTCTGTCCAGTCCCGTGTTCCTGCATGAGGAGAGGCCAACACGACACATAATCCTGGAGATGAGAAAGGAGGAAGATTACAAAATTCCCATCTGGATTATAGTAGGGAGCACGCTGGGTGGTCTGCTGCTGCTAGCCTTGCTCATCCTGGCTCTATGGAAGCTGGGCTTCTTCAACAGGCAGAaacagagggaagaagaggaggagcaaGTAGCCAACGGGAAGATGCCAGAGGAGCGGTAACCATGGCAACAGTGCAGACCCGCATCAGCCCCATCACTCAGGGACCCCCAGCACACCCCCAGACAAGACTGTGGGCGTGACCTCGGTGTCCGTATTCCCCTTGGCTGAACAGCACCCGTCTTGCACTGCCGAGCCTTCTTACTCGCTGTCTTAGAACCCGACAGAAGCTCCCggcccacctgtctctctctcttatgacTGAGGAACTTCAACAGACTGACACCATCTGGACAAGTCAGCCTTTATGACCTATCATAATCATCACCACAAAGCCAAATGACAATCTTTCACCAGACCAATGACCACAGAATATTTTTCTAAGAAAGTGTGCCTGAATATAATAGAGTGAATGGAATAAGCCCATCATTAATATACAGCACAAGGCCAAAGAAAACCAGGCAGCCTGTTCAGAACACAAGATTACCTATAATGGCTGATGATTTTTTGGGCTTTTGCTATGGCGTTTCTCAAATATGCAACAGCAACGACCTACTCATTTATTTTGGAAGAGAACATGACGCAACTGAAATATTATATTGTATTTGCAAATGCCGTATTCTATAGCTGATGCACTTTTGTCGTATAACGATAAACTTGAATTGTGTACATATCCAACTGTGCCTTCGCAACTGAATTAAGTTGTCGATGACTGTTAAAGTGGCATTACTATACAACTACATAATATTAACTTAAGGCTATTGTGCAACAACGTTGTCAGATGTATGTACACCAATACGAGGCTGCTTTGCACCGTGGCGTACAACCTGTGGATTTATATATATGAACACAGATGACCTGGGGTCCTAGAAAGGATCTCAAGGAAGATGCAATGATGGCCATGTAGAAATCATTAAAGCATGCCAAGTGGTTTATAAAGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181972 lncRNA upstream 53327 54354056 ~ 54354331 (+) True G159417
TU181966 lncRNA upstream 55936 54346852 ~ 54351722 (+) True G159412
TU181961 lncRNA upstream 63283 54344009 ~ 54344375 (+) True G159407
TU181959 lncRNA upstream 63710 54343670 ~ 54343948 (+) True G159405
TU181469 lncRNA upstream 113247 54294176 ~ 54294411 (+) True G158946
TU182025 lncRNA downstream 32825 54488779 ~ 54489407 (+) True G159466
TU182066 lncRNA downstream 74831 54530785 ~ 54530990 (+) True G159507
TU182262 lncRNA downstream 138306 54594260 ~ 54594503 (+) True G159697
TU182475 lncRNA downstream 279846 54735800 ~ 54736001 (+) True G159896
TU182502 lncRNA downstream 296213 54752167 ~ 54752497 (+) True G159923
XM_021565401.2 mRNA upstream 216071 54114973 ~ 54191587 (+) False dgkzb
XM_021579388.2 mRNA downstream 18069 54474023 ~ 54486909 (+) True cln6b
XM_021565562.2 mRNA downstream 35771 54491725 ~ 54504596 (+) False calml4b
XM_021565556.2 mRNA downstream 35792 54491746 ~ 54504596 (+) True calml4b
XM_021565598.2 mRNA downstream 396858 54852812 ~ 54944780 (+) False spg11
XM_021565607.2 mRNA downstream 396858 54852812 ~ 54944780 (+) False spg11
TU181970 other upstream 54270 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 385754 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 2583476 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 2986536 51420847 ~ 51421122 (+) True G155541
TU177846 other upstream 2990540 51412266 ~ 51417118 (+) True rl28
TU182462 other downstream 272342 54728296 ~ 54728860 (+) True G159889
TU183214 other downstream 1490189 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 1789090 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 2592360 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 3472196 57928150 ~ 57931991 (+) True G163513

Expression Profile