RNA id: XM_021565607.2


Basic Information

Item Value
RNA id XM_021565607.2
length 7647
RNA type mRNA
GC content 0.57
exon number 40
gene id spg11
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54852812 ~ 54944780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGAGAACCCATGTCATGTGATTTGTGTCAGGATGTAGGTAAGAATGTTTACGTGAAAGAGGAACACACGTCCACGAAAAGAAAACGATAATGTCCAAATTCTGTTTTAATTGTTCTCTCATTTGACGACAAGTCGACAGCTGACTATATGCAACTGCAAATAGATAAATTACATATGAGATCGTATCAGTTGTAAGGCATCTGCATCAAATTCGACATGATTATGATAAATATGTTGCACAGATCTGAAACTCGAGATAACTGTGCATTAGAAGTCGCTCTCATCCCGGAGAGCAACCTCTGTGAAAATGTTGTGGACACAGCAAAAGCTAAAATGGCCCAAGGCTGCTCCTTGCTCTGTTGCTTGAGTGGTGCTGGGGGGCTGACAGTCGGCGACATTTCAGAGAGCAAGGCACCGGGGAGAACGGTGGATGGCACATATACAGACTTTGCCTGGGAGGAGGTGacagtttacaatggagcccgtGGCAACCCTAGACTTCTGGCTGTGAGCTCTGAGTGTGAGTTGACACTGTATGAACTGGAAGCAGAGGGCCCTACCTCTGGCCCTCTTGTCTCTGCCTCTGAGTTCACAGCAGAGAAGCTACTGCAGCTGGTCAAGGAGAAAGCCCAGAGTGTGGCTGAGGTGGTGTCCTTGAGGCTGCTGTCCTTTGTGGATGCCAGAAGCTTTCTCCTGCTCAACTCCAGTGTTGTGGTACAGCTGCAGTGGCAGCAGGGGGCTGAACCGGAGACCCTGTCCTGCTGCAGCATCGTTCTGCCCCCAAAGGCCCCCCTGGACACATGCACTGACTACCAGCTCTGCAGAGGCATACTCTTTGTGTTGACCACAGCTGGAGTCATATATGTGTTTGACAGTGCTGAGGGGAGGAAGCTGGCCAGTGTAGACCTGCCCTCGTACCACACTGCTGGGCTGGGGGAAGATGAGCTGGCCCCCTACCTGGACTCCTTCTGTCTCCTCCAGGTGTCTCCTGACCTGGGTACTGCTGTTGCTGCCACTCAGTCTAACACTGCCTTTGCTGTCGACCTCAACCACTACTTCAGGATGTACCCAGAGCATCTGATGTGTCGAGTGGTCCCCAGTCGCCCTCCCCTCAGGCCCCAGGGTCCCTGTGACGAGGACAGCCTCTCCAGCTCCATCTACAGCCACACTGTGCTGGGCACCTCCTTCAGCACTGACCGGTCCTGGGAAGCTAGGCTGACTTCTCTGTACAACAAGGCCAAGgctacccctccctcttctcctcagaCTCTGGGGGCTCCTTGGTTTAAGGATTTCCCCCACATCGAGTGTGGGCGGGCAGCTATCGCTGCCAAGCTCTCCCAGAGCAGAGTCCCATCAGGGGGAGCCACCATGCAGTTCTCTGTGCCCGACACAACTGCCCCAgtgctgctctctgtctctgaattCTCCACTGTGTTGACCTTTGGCTCCCCTGGTAACAGCGAGACAACTGTGGCCTTCTGGGATCTGCAGTCCCAGAGTGTTACCTACCACCGGCCCACCTCGCCCACCGTGCCTATCCAGCGTACCGCAGAGGAGCAGCTCAGCCTGCTTCTGAAGACGTCAGGCCTGTCCCTGGTGCTGTTTGCTGTGTCACAGGAGGAGCTGCTCAACAGACTAATGGTATTTGGCAGTGCTGGCACAGTGGACTCTCTGTGCCACCTTAATGAATGGGGCCGCTGCGCCATCCCCATTCACGCCTTGCAGGCTGGTCTAAAGAACCACCAGTTGGACACAGTGGACTTCTTCCTGAAGAGCAAAAAGAACGTCCTGACTCCACCCTCTGGGTATATtctagctgaccaatcagctacCATCTCAACCCAGAGCCAGCTGAAGAATGTCCAGGATCTGTGTCCGGCTCTGGACCTTCTGCGTTGTGCCATCAGAGACAATCATACTGAGGCCCAGAGCCGACAATTTTCAGAACAGCTGCTCAGCATCACCCTGGCCTTCCTCAACACACAAGTCAGGGCCGTCCTCTCCGCCACAGAGGAGCTGGATGAGAACCTGCAGGAGTGTGTGGAGATCTTGGATAGTTACGTCTCGGATCTGCGTACCTTCATGAAGAGGTTTCCCTGGCCAACAGGTGGCGACACTTCCACCCTTGTCCCATCCCCCATACCTGTACCTGAGGAGGTGGAGAATGATGACTGGAGTTCCCTCTCTTCTGAGGAGGTGGTCGAGCGGGCAGTGCTGACCAAGCAGATTCCCCGGGCCCAGGCCTACCTGAGGAGCCAGAACAGGCCAGATCAGCGGCTGGAGGAGTTGAGGAGTACGGGGCTGCGTCTGGCCTTCAACTGCCTGACACACAAAGACCTGGAGCAGGCCACTGCACTGCTCAGGAACATGGGTTTCAACGTAAAGAAGCAACTGCATAACATATGCCTCTACACAGATGACCGGGACCTAAGGGACTTTGTGGTGGAGGAGTTGTCAAAGCAGAGCTATTTGTCTGATGAAGAGACACAGAGGGTGGAATTCATCAAACAGATTGAGGCTTTGTGTGCGGTGCCTGAGACGCGCTGCACAGACCCTGTGGGCAGACAACGGGTTCCTCAGATGTCCCAGACAGACCCAGGGTCTAAGAGTCTGCTGGAGGAGCTGGTAGACCAGAGAGGCTCCCAGTCAGAACAGACACTGTGGAGCTCGCTGCGTCTGGACTGGGTCAGACATTGGGACCACAACACCCAGCGAGCCATCCTGCTGTCACGCCTACAAGACTCGGCTGTCAGTTCCTGTGACCCGGGGGTCCTGTGGTCATACCTCACCTCCCACCACGACCAGCGGAGGGTCACCGAGTGGATTGAGAGCCTAGCCGCCCAGAATGGTGACCCTTCCAGCGCCCCCCAGTGGCCCGCCCTCACGGCAGAGGTGGTCAACAACAACACCCGGTGCAGCACCCACATGAGGAACCACATCCTCTACATGTTGGCCAGGAGAGGAGTGTTCATCCAGGCCGAGATGGCTGATTTTGAGCAGCTGTTGTGGAGGCTGGGCCAGGCAGGTGGGGTGATGCAGGCCAGCCCACCCATTCCCCAGTACCGCTCCCCTCAAGGACACGACTTACACACACGCTTCATCCACCACTGCCTGGACAATGGCCTTCGCTACCTGCTCTACACCTACCTGGAGCACAACAGGTTGACACCCAGGAATTGCCCTGCTCTAGCTGATAATGGTCTATATGAAAGTCACCCGTGGTTTGAAATGCTGGTGAAAATGCAAGAGATTACCAGAGACCTCTCAGatcCAGAACGTGTGTTCCAGGCCAGTCTGACCAGTGCCCAGGTCCTCATCCCAGGCAGCCAGGCCATGATTAGCAGCATGCTCCTGGAAGGACACAGTCTTCTGGCCCTCGCTACCATCATGTTTGCCCCGGGTGGCATCGACCAGGTGGTGAGTCAGGGGGAGAGGGCTGGGAGCTCTGTGTCTAGGGTGGACCCCCAGCTACTGAAGATGGCCCTGAGCCCCTACCCCAAGCTCAAGGCAGCGCTCTTCCCTGTGAGCGGAACACGAGGGACCACCGCCACCACATCCGATATCTCCGTCTACCACCTCATGCAGTCTTTACATCCATTGGATCCATCTCGACTGTTCGGGTGGCAGTCTGCCAATACACTAGGCTCCACCGAGACCTCAGTGGAGCTGCCCCATTTCTCTAGTCCTCACCTCGTCAGTAAATACGCCCTAATTGAGAACCTCGACTTCCTCTACTATCTGCGTCACGGACGACCATCGTTCGCCTACGGAACGTTTCTCGTCCAACAGCTAGCCAACTCCAACGAAGTGAAGTCACAGCTCAGTCATGCGGCGCAGCAGGCCTACAGCCTGGCCATGCTGCATTTCAGCGTTCCCTCTGTGGcagctgcatgtgtgtgtttctgcgagCTCCTGGGTGTGTGTAGCCTAAAGCTGCGGGTGGACCTCAAAGCCCTCAGTCTGATCCTCCGACTCCGGACCCAGAGGCCTGGTGGGACCAGCACATTCTCCCTTAAAGACTTACTGGCTGCTAAAGGCAGTAAgctggtggaggtggagagggagacagcGGAAGAGCTGCTCTTTGACTTGGAGGAAGCTGTGAAGGACAGTTTGGAGAGGAAGGGCACCAGCAGGTCATCCTATGAGGCAGGTCAGGAGTGGGCTCTGCCCATACAGTTTTGCCAGCTACATGCCCTGCCCCTGAGCAGTGTGTACCCGCAGGACTGTGCAGCCGACAGCCAGTGGCTACACTTCCTGCTCTTTGTCCAGCTGCACACCTACCCCCCTCAGCAGGTGAGGTCCCTGGCGACCCAGTTCAGCCCAGCCCTGCAGGCCCACCTGACCTTGGCCTTCCAGAACCTGCAGCTCAGCTCTcagtggagggtgggggaggtGGAAGACAGGGAGGCCCAGGGTCAAGTCACCCTGCCCAGCGAGGAAGCCTCCGACCCCCCCAAGGAGCTGTTCCAGGTGCTGCTGCAGAGCCAGGAGCAGGCCAGTCCCTGGAGACACCTCCTGGGGGAGGCCCTGGCACAGCACTGCCCCACGCTCACCATACTAGCTGCCTGTCATCAGGAAGCCGACCTGCTCCAGTGCCTCTGCGTCTGGGTCCTGACCTCTGTGGATGAGGTCATTGCCACAGAGGCTACCGCccacctggaagagagcccgcAACGTCATGAGTGGAACCTCCACGACCTGTCAATCATCTGGAAGACACTGCTGAGGAAATGCAGGATCAGGCCTCTCATACGAGGCTTCCAGCTCTTCCAGAGGgactCTCCCCTGATCCATGTGCTGCTCATGTACGAGCTGTGCTACGACTACAAAAACTACCCTGAAGCCAAGAAGAAACTCATTGAGTTCCAGAAATGCCTGATCACGctGAGGAGCAGTGGTGCTCATGCGCCAGCGGGCATCCCTCTCCAGTGGGTGGAGTGCCAGGCCTCAGTCCTCCTGTTGACCATGATGCAACAGTGCTCCACACAATACGAGCTGCGCAGACTACTGCAGCTGCTCGCAGACATGGAGCGCCTGCTCAAGTCTAACGGCCCGGACTTCAAGAAGCTCAGCTTCCTCAGCCAGGTTCTCCAGGACacctcggtgtctctctctcccaggctgcTTGAGAGCTATTCCCCTGACATCCTGCAGGGAGAGTGCCAGAACATGTTGGAGAAGCTGCAAGACAGCGGGCTGTTCCACAAGGCCCGCCAGGTGGCCGAGCTGGCAGGGCTGCCCATTGACAGCCTGGTCATCAACGAGTTACTCCAAGACCTCGGTGCCCTGAAGGCCAAGCGGcactgggagaggagggagacccGGGTGTCCTTCTGGAGAAAATGCCACGAGCAGTTCAGGACTAACagcactggtcctggggctgccTCGGAGTTCTTCCTGGCCCAAGCAGGTGCCTCTGAGCCTCCCCGGGGCTCCGTGGCCGGGACAGAGCTGCTGTGTGTCCAGGAGAGGTGCCTTCTCCTCAGCCTGGCCGGCCACTGGCTGTCCTGGCTCGCCCAAGCTCCCCTGGCACGTCTCGAGGACCTGGAAAAGCAGCTGTGGAAAAACCGAGTGCGCCAGCAAGTCCTGCTCAccgccatggagaaggagagcatGTTCGCCCTCCCGGCGCCCACCATAGCCCCCGAGGAAAACTCCTACGAGGCCCTGATCAGGGAGTTCTCCTTCTCCAAGATGGCAGTGCTCAACGAGCCCAGGTACCTAAGCTTGGACGGCCTGCCCAGCTTCTCCCCTAAGGAAGAGGGTGGGGAGAAGACTGGGTCGGAGGAGCAGGGTGCTCTGGCTATCCTGGTGGGGCAGCTGTTGGACGAAGGGTGTATCCACGAAGCGAGCCGTGTGTGCCGCTACTTCTCCTTCTGCTCCCGGGACATGTGGGTAGTGCTGCACTGCCGAGGCCTGGCCTCAGGCGAGCTCCAGGCTGGCCTGCAGGACATGCTCACCTTCGAGGGCCTGCCCAAGAAGAGCATACCCAGCTCAACCAGTTTTAGCAGCCTGTCCTCCTTTGTGATGGTGCCCTCCCCAGAGGATCAAACAGTGACTCAGCTCCAGATGCTGGTGGACGAATGTCGCCACGGAAAGAGCTACTGCAAGCAGGTCCTGAGTCTCTACGAGCTCTCCAAGGAGCTGCAGTGTTCATACAGTGAGATCTCAGCTGAGGAGCCTCAGGCGGTGCTGTGTAAGGTGCTACTGTCCCAGCAGCCGGAGCGCTATAAGAAGGCCCAGGCCTTCATCAGTGTGCAGGGCCTGCAGCCTGACACCGTGGCCCAGCTTGTATCCAACGCCGTGGTCCAGGGCCTGTTGGCCTCTGCACAGGACGGAGAGACTGCAGAGAAGCAGATGTTCAGtccagaggaagggagagagtccTTCTTGCAGCTGGCCAAGCTGTGTGGGGACCCCAACCTGGTGGGCATCAAACTGCTGGACCACATCCCCACTGTGCCACTGGGAGAGCTCGGCTGCACGGTGGAGCTGTTGATCCTGGCCCACGACTGCTTCAGTCTGACCTGTAACATGGAGGGCATAGTGAGGGTGCTGCAGGCTGCCCGCCACCTCAGCCACGCACACCTGGCCCACAGCGAACACTACGGCCTGCTGGTGCGTCTCCTAACTGGCATCGGAAGATACAATGACATGACCTACATCTTCGACCTGCTCAACCAGAACCACCGCTTCGAGATGCTGCTCAGGAAAAAAGTAGAGTCTaacTTCCGGCTGAAGACGGCCCTGCTGGACTACATCAAGCGGTGTTTGCCGGGGGACAGTGAGAAGTACAACATGGTGGCCCTGTGCTTCAGCATGtgcagagagataggagagaaccACGAGGGAGCCGCCCGCACCCAACTCAAACTGATCGAGTCCCAGCCTTGGGCAGTGACCCCTGAACTCAGAAGTGCCTTGATAAAGGTTCTTACTCTCCTGAAGGATGCTGCAGAGAGCTATTCTAAGGACTCGTGTGTACGCCAGGCAGCACGTTGTGTCAAAATGGCAAAGCTGACCACACTCCAGCTCCACTTCCTGAACCACGGTCAAGACCAACGTGTCATCAACCTGCGCCAATCAGATCTCCTTGGTGCCATAGTGGCACTGCCCCGCTGTTACCAGGCTTTTGTGTTGTCGGAGGCCTACGACTACAGTCCAGACTGGGCGGAGGTGCTCTACCAGAAGGTCATCCTCAGTGGAGACTTTTCTTACCTAGAGGAGTTCCGACTTCACAGGCCACTCCCCGCCTGCCTGTTTGAAGACATATCCCAAAAATTGACTCACAACACGCCTCCGAGCAGTGCGGGCCAGAACCTGAAGAGACTATTGCAACACTGTGATGACGTTTACACCTACTACAAGCTTGCGTATGAACACAAGTTCTTCGACGTGGCCAACATGTTACTTCAGGACTCCAAAACAAGCAGTTACCTAAACGACAGGCTAGGTACTAGGTAGCTGATTCGAAACGGCACTGCCCCTGTCAAATACCTCCAAATATGCACGTGGAATTTTTTACAAACTCTTTTCTATAACATCTTTCATGGAGATGAATAGTTTCACGaaataatgttttattttctCCATGCAAAATCACTGACTAACTGAATAAATCTCGCATTGGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182532 lncRNA upstream 4844 54768824 ~ 54847968 (+) True G159949
TU182519 lncRNA upstream 91255 54761331 ~ 54761557 (+) True G159940
TU182502 lncRNA upstream 100315 54752167 ~ 54752497 (+) True G159923
TU182475 lncRNA upstream 116811 54735800 ~ 54736001 (+) True G159896
TU182262 lncRNA upstream 258309 54594260 ~ 54594503 (+) True G159697
TU182648 lncRNA downstream 34130 54978910 ~ 54982484 (+) True G160061
TU182673 lncRNA downstream 65429 55010209 ~ 55077415 (+) True G160082
TU182721 lncRNA downstream 128749 55073529 ~ 55074103 (+) True G160127
TU182778 lncRNA downstream 240810 55185590 ~ 55205725 (+) True G160184
TU182814 lncRNA downstream 479456 55424236 ~ 55425453 (+) True znf609a
XM_021565562.2 mRNA upstream 348216 54491725 ~ 54504596 (+) False calml4b
XM_021565556.2 mRNA upstream 348216 54491746 ~ 54504596 (+) True calml4b
XM_021579388.2 mRNA upstream 365903 54474023 ~ 54486909 (+) True cln6b
XM_021565519.2 mRNA upstream 396858 54364918 ~ 54455954 (+) False itga11b
XM_021565626.2 mRNA downstream 7121 54951901 ~ 54976149 (+) True LOC110491832
XR_005037089.1 mRNA downstream 55659 55000439 ~ 55024185 (+) True LOC118940499
XM_036950793.1 mRNA downstream 296620 55241400 ~ 55426308 (+) False znf609a
XM_036950801.1 mRNA downstream 422176 55366956 ~ 55426308 (+) False znf609a
XM_036950795.1 mRNA downstream 444951 55389731 ~ 55426308 (+) False znf609a
TU182462 other upstream 123952 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 499424 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 830908 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 3028630 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 3431690 51420847 ~ 51421122 (+) True G155541
TU183214 other downstream 1001363 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 1300264 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 2103534 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 2983370 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 3270897 58215677 ~ 58216383 (+) True G163660

Expression Profile