RNA id: XM_021565626.2


Basic Information

Item Value
RNA id XM_021565626.2
length 3211
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110491832
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54951901 ~ 54976149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTTTTAATTACCGGTGACTGTATAACAGTGATCTCGGAACTGTCACATAGTCTAGGCTATCATAGGACGCACATTTGGTCTGTCATGCAATGGAGGCTCGGATTTTTACCCTTTATTTACTTACCATCGTCTGCTTGTTTCACGTGTCTCTACAGGGAGAGCACCAGCGCAGACTGTACAAGGACCTGATGCGAAACTACAACCCTCTGGAGCGTCCCGTGTTCAATGACTCCCACTCGCTCACCGTACACTTCAGCTTCAGCCTCATGCAGATCATGGATGTGGATGAGAAGAACCAGGTCCTGACGACCAACATCTGGTTACAGCTGTACTGGACTGACTACTACCTGCAGTGGAACACCACAGACTACCCTGGAGTTACCAATGTCAGGTTCCCTGACACCCAGATATGGAGGCCTGACATTCTCCTCTACAACAGCGCTGACGAGAGGTTTGACGCCACCTTCCACACCAACGTCCTAGTCAACTCCACTGGCTACTGCCAGTATCTCCCCCCAGGAATCTTCAAGAGCACATGCTACATCGACGTGCGCTGGTTTCCCTTCGATGTCCAGCGCTGTGACCTCAAGTTTGGCTCGTGGACATACGGGGGCTGGTCTTTAGACCTGCAGATGATAGAGGCGGATGTGACTGGATACATTGCTAATGGAGAGTGGGACCTTGTGGAGGTCCCCGGACGGCGGAACGAGCGTTTCTATGACTGCTGTAAAGAGCCTTACCCTGACGTGACCTTCACGGTGGTGATGCGTAGACGCACCCTCTACTACGGCCTCAACCTGCTCATCCCCTGTGTCCTCATCTCCACCCTGGCCCTGCTCGTTTTCCTGCTGCCCGCGGACTCTGGAGAGAAGATCTCACTGGGTATCACTGTGCTGCtctctctaactgtcttcatgcTCTTGGTAGCCGAGATCATGCCGGCCACCTCCGACTCTGTTCCTCTCATAGCCCAGTACTTTGCCACCACCATGGTCATCGTGGGCCTGTCCGTCATCGCCACCgtcctggtcctccagtaccaccaTCATGACCCGGATGGAGCCAAAATGCCAAAGTGGACACGCGTGGTGCTCCTGAACTGGTGCGCCTGGTTCCTGCGTATGAAGCGGCCCGGCGAGGAGCGTGTGCGTCTGGCCTGCCACAACAAGCATCCGCGCAATAGCCTCTCCAGTGTGGAGCTCAGTATGAGCCAGGGGACCCTCCAGCCCACCAATGGCAACATGCTCTACATTGGCTTCCGGGGCATGGAGGGCATGCACTACACCACCACCCCCGACTCTGGCGTCATCTGCTCCAGGCTGGTGGGGGCAGGGGATGAGGAGGTGCTGCTACCCGGGGCCGGGCTGCCCAACTTGGGCAGCATGGCAGGCGGCACCGGGGTGGGGGTGGCGAGCCCCGTGGACTCCGACATGTCCAAGATCCTGGAAGAGGTGCGCTACATCGCCAAGCGCTTCCGGGGCCAGGACGAGGACGAGTCGCTGTGCAATGAGTGGAAGTTTGCGGCGTCTGTGATTGACCGGCTGTGCCTGATGGCGTTCTCTGTGTTCACCATCCTCTGCACCATCGGCATCCTCATGTCAGCGCCAAACTTCGTGGAGGCCATCTCCAAAGACTTCTTCACCTGAGCGGGCTGTTTGTGTTGGAGGATGAGAGGGAtggggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgtttgtttgtttgtttgtttgtttgtgtgggggggggggtgtacataTATACACTCACAaaagcacacacacgtacagtctcacacacaatctcacatatacacacacacattcccacttGCACTCACATGCATTTAATGTATACTGTTTATATCCCAAACACATCTTTACCTATGACTTATATCAGCTGACTACCCCACTCTTCAGTATTTTCACATACGTTACTGTATTTAGAGTGGCTGTTATAATGGCACAACTTATAGCAATACAAATGTGTTCATCATATGTGGTGTGAATCTGTGATCAATTGAGGTCTTCATCAACAATGACTGTGTATATTAAGTAGCACTTTGGGGATGTTCCAGAAAGCAGGATCATTGAGTTAACCAGCTAGCTTACTGAAATCCATATTTTTGAGAAATATACACTTGACATTGGCATAGTATATATTAATCAACAATCAGAAACGCATATTCAAGCTGAGCTAAATTAACCAAAAAAATTCAAGAGATATATATGATTGTTAATATGTTAGCTAGATAACTTAAGGATTTATTTGATTTTATCACAGGCTATTGGAAGTATACATGGGTGAAAATGTTTGTTCCAAAAAAGATTGGTGTTTTGTAATGTTCATTCgtgtacagtacatgtaaaaaTGGAAAAAGTAGTTTCCCTTGTTTATGCCTTTCAAAGGAAGTCTCTGTAAAGTTTCATGCTGAGTTTCTCTCAATCTAAAGCTCGTTTCATAGATTTGCTCGAGTGAATTGAAGAGACTGCCCCAATTGCAAAATGTAGATCATTTCTGTTTTCTTTCCTTCTGCATTAGAAGTTCAATTCCCAAGAGAACAGCCATGCCAATAATAATTGTAACAGTGtttttggacttgtggtttttgTGCTATTTATTCTTTGTTTCACTGCTTTGTGCCACTGACCCATTTGACATGCATGGAACCTATGACATTTGACATAAGTGTTTGGACGAAAAGCGTACAATGAGGGAGTTCAGGTGCAGTGGAGTGCAGTGATCCCTAGTGTCACCCTGGAATGAAGGACAAGTTCTGCTCGAATACTTCAGGTGTGTATTCACCAGGATCCAAACGGGAAGGATCTAACTAaatgtgtccaatagaaactctttttttttttggtaaacGTTTTTCCATTTCCAAACGTTTTGCAGCAGTTTGCTACGTTGTGcagtaatgaatacacccccagGTGATAGCTCAATCTGTTTGAAAATGGTTTCATACCTTCTGAATATGACCTTGGCTTGGGTTTTCCATCGCCCTCGGTTCTCCTCAACTGTTCCTCTGTACTGTAAAAGCTGTATGGGAGCCTACCGCTCTTCCCGTCCACCTTTATCAATTAACCTTTAACCCTTAAACGTTTGTCATTTATGTGAACTTGCATCCATGCCCAGAATACATTTTGATCCATgcacaaaaataaatgtatttttctaGATGTCA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04809 CHRNA7; nicotinic acetylcholine receptor alpha-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182632 lncRNA upstream 10220 54941100 ~ 54941681 (+) True G160045
TU182532 lncRNA upstream 103933 54768824 ~ 54847968 (+) True G159949
TU182519 lncRNA upstream 190344 54761331 ~ 54761557 (+) True G159940
TU182502 lncRNA upstream 199404 54752167 ~ 54752497 (+) True G159923
TU182475 lncRNA upstream 215900 54735800 ~ 54736001 (+) True G159896
TU182648 lncRNA downstream 2761 54978910 ~ 54982484 (+) True G160061
TU182673 lncRNA downstream 34060 55010209 ~ 55077415 (+) True G160082
TU182721 lncRNA downstream 97380 55073529 ~ 55074103 (+) True G160127
TU182778 lncRNA downstream 209441 55185590 ~ 55205725 (+) True G160184
TU182814 lncRNA downstream 448087 55424236 ~ 55425453 (+) True znf609a
XM_021565598.2 mRNA upstream 7121 54852812 ~ 54944780 (+) False spg11
XM_021565607.2 mRNA upstream 7121 54852812 ~ 54944780 (+) False spg11
XM_021565615.2 mRNA upstream 7121 54852812 ~ 54944780 (+) True spg11
XM_021565562.2 mRNA upstream 447305 54491725 ~ 54504596 (+) False calml4b
XM_021565556.2 mRNA upstream 447305 54491746 ~ 54504596 (+) True calml4b
XR_005037089.1 mRNA downstream 24290 55000439 ~ 55024185 (+) True LOC118940499
XM_036950793.1 mRNA downstream 265251 55241400 ~ 55426308 (+) False znf609a
XM_036950801.1 mRNA downstream 390807 55366956 ~ 55426308 (+) False znf609a
XM_036950795.1 mRNA downstream 413582 55389731 ~ 55426308 (+) False znf609a
XM_036950807.1 mRNA downstream 415118 55391267 ~ 55426308 (+) False znf609a
TU182462 other upstream 223041 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 598513 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 929997 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 3127719 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 3530779 51420847 ~ 51421122 (+) True G155541
TU183214 other downstream 969994 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 1268895 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 2072165 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 2952001 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 3239528 58215677 ~ 58216383 (+) True G163660

Expression Profile