RNA id: XR_005037089.1


Basic Information

Item Value
RNA id XR_005037089.1
length 2375
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118940499
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55000439 ~ 55024185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGTGTCTTGATGTACTGCCTTATGTTAGTGTCGTGTTCTTGGTGTTGATGTTTTACTAAAACGTTTCACCTGCATCCGACTCACCGCCCCATCATTACACCATTGTAACCAGTGTGTGCGTCCACTGACCTGGAGTTTCTTGAGTTTCAGCTGAACATGTGCAGGTGTTCTAATGCCTTTAGTGTCCACAATGGGCCTGGCCGTACTCAGCTGGAGGTGATGGTGGCGGCATCTGGCGCCAACAGGTGCTTGGAGACCATCAGCAAGGCTTGAGAAGAAAGCTGGAGGCATATGCTGCAGACAAAGCGGGggacctcctctccccctccctctcagtgTGCTGTCCCTGTGTtgatcagcagagagagactaaTGATGGGCAGGTTATCCCCCCACGTGTGAAGACCCAGGATTCAAAGGTCATAtcctcccccacccccccaccccccaagcCACCGAACTCTGCCATACCTCTGCCGATATTGAAAACCAATCAGGGCCTTCCTTCAGGCAATTTGTCGTGGTGGTCAGAAGGGGTGGAAGGGGGAGTATAAGTGGGATAGGAATAGGAAACAGGCTGAGAGGGAAGGTGTTTGTGTGTAGGGGGGGTTTGGGTGGTGGGTGGCAGTGGGGAGTGGGATACTGATGATTCTCCATCTGTCCGACAAGGACCTTAGGGAGGCAATCTGTTATTTTTGAAAAGCCCTTGTCGATGGTGAGAAGTTATAGAGGCTCTATCCGGCCATTTACTGCTTGATGTTGTTCATTTATAAACATGAAAAGACCCCTTTCCCCGGGTAAACAGTTTGACCCTGCGGACGGCAGGTCACTGTTATTATGTGATAGAGATTTGAGAAGGTGATGTGTAGTCTACCTCACTCAGCAGTTTGGTGTCAGTGCTGGATCATGCTACGGcagggctttttttttttttttacacgaaACGTTAAAAAAAAagctgaaacagggagggacttcCTAGATTtgtcaaattaaaaaaataaaaaaataaaaaaaagttttctgTTTTAAGACATTTGCCATTGCGTTCCCTAACATGAACCAGGCATCACAGCCTTCTCAATCTAAggcagtgattcccaaacctctCCTTGAGTACACCCAGCCATTCCACTTATTTCAATGTATTCCAGTTCTAGCACACCTCGTTAAATTGATCAACTAAACACAGAGCCCTTCATTGGTTGAAATCAGGTATGCCAGCACTGGAACACATCAAATACGTGGAATGTGGGGGTACACCAGGGgaggtttgggaaacactgatctaCAGAACGACCTGTGATGATGTTTTTGACACTACTAACTAGTCACCTTTTGCATAATATTAGCTGCCTGTTGTGTGGTACACTATGCCATTGATACTGACACAGTTTTGAGGCATCGGTAGAGATTGTGATAAACAGTTCAAATTAGATGACAATGGTATGTACGTATCTCTGTAGcacaagacacacacattcacacactgaaAAGTAGAGTCATCCCTGTGGTCTGTTACCTGAGAGATCCTGGGGCGGAGGAGTCTAATAcaggtgtgatgtcattgtgctaaacacacacacacacacacacacatacagtatacacacacacacatacagtacacacacacaccatctatttTTGTGAAAGGTCTGGCAGTCATCGTCTCTCGCCGATAAAGTCTGTTATTTCCTTATGTGGCAATGTGGGTATTTATATGTAGAGAAGATATCcaccaccgagagagagaggaacagtgagagagagagaggctactgcCTCTACAGGTTTGAGGCCACAGACAACTCTGTTTCCTCCCCCcgccctctctcctttcctctatcccccgGCCTTGCTtcatccttctctcatcctcctctctctcgtagacattagctaggtttccatgaACTTTTCcagcaattttttttttgggggggacattTAGAAAGTTCACATAGAAAACAGATGTGACAATTGCCTGCTacaatgtgtttccattgaacTATCTTGTGTCGATAaaacagctggatgtaatgaagtcacacctaaaaaaaaaaaaaaagaactttCTTTCGCAAGAAAGAACAGTGTCGGCTAAAAATGAACttgaagtgtttccattaccCATTTAGGCAAAATGCTCATTAATAAATTGGCGACAGCCTATATGCCATCCCAcctttctgtttcatgtctcaggtagcccgcATAGAGACAATGCAAGAATTTACTAATATTTGCCATATTCTAATCATTCTCATGTGCCAATGTATCGCCACAGTCTGTGTCAtggtgatttattttttatttttttagggggtggatcagctttaatatcgAGAATaaattgttgcttccatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182648 lncRNA upstream 17955 54978910 ~ 54982484 (+) True G160061
TU182632 lncRNA upstream 58758 54941100 ~ 54941681 (+) True G160045
TU182532 lncRNA upstream 152471 54768824 ~ 54847968 (+) True G159949
TU182519 lncRNA upstream 238882 54761331 ~ 54761557 (+) True G159940
TU182502 lncRNA upstream 247942 54752167 ~ 54752497 (+) True G159923
TU182721 lncRNA downstream 49344 55073529 ~ 55074103 (+) True G160127
TU182778 lncRNA downstream 161405 55185590 ~ 55205725 (+) True G160184
TU182814 lncRNA downstream 400051 55424236 ~ 55425453 (+) True znf609a
TU183151 lncRNA downstream 746182 55770367 ~ 55770752 (+) True G160508
TU183011 lncRNA downstream 803575 55827760 ~ 55829632 (+) False G160381
XM_021565626.2 mRNA upstream 24290 54951901 ~ 54976149 (+) True LOC110491832
XM_021565598.2 mRNA upstream 55659 54852812 ~ 54944780 (+) False spg11
XM_021565607.2 mRNA upstream 55659 54852812 ~ 54944780 (+) False spg11
XM_021565615.2 mRNA upstream 55659 54852812 ~ 54944780 (+) True spg11
XM_021565562.2 mRNA upstream 495843 54491725 ~ 54504596 (+) False calml4b
XM_036950793.1 mRNA downstream 217215 55241400 ~ 55426308 (+) False znf609a
XM_036950801.1 mRNA downstream 342771 55366956 ~ 55426308 (+) False znf609a
XM_036950795.1 mRNA downstream 365546 55389731 ~ 55426308 (+) False znf609a
XM_036950807.1 mRNA downstream 367082 55391267 ~ 55426308 (+) False znf609a
XM_021565661.2 mRNA downstream 454362 55478547 ~ 55535685 (+) False LOC110491849
TU182462 other upstream 271579 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 647051 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 978535 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 3176257 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 3579317 51420847 ~ 51421122 (+) True G155541
TU183214 other downstream 921958 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 1220859 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 2024129 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 2903965 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 3191492 58215677 ~ 58216383 (+) True G163660

Expression Profile