RNA id: XM_036950807.1


Basic Information

Item Value
RNA id XM_036950807.1
length 9381
RNA type mRNA
GC content 0.53
exon number 8
gene id znf609a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55241400 ~ 55426308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACTATTTTGCTTGTTATGCCATCGGTAGAAAAGCTTTTCCCTCCCCGCTGTCTCTGGTCATATTACACCCAGTAGTCCGGGCTGTGTTCTCAGGGAACACAAACACTTCTCAGTGTGtctactcgctctctctctcttgtactctgtcctccctccctttctcagaTTCTGTTTTCACGCATGGGCTCAAAAGCAAAGAGGCATCGGAGGTGGAGCTGGCAGCGATCCATCAATGCTGAAACTAGGGCGAGCAAAGGGAAATGTAACCTAAACGGCAGGCTAAACCAAAGAGCACAGCCTCTCAATGGAGTCTCTGGTCTCCACACCcagccctccacccctccatctcctgGCACCGGTGGGCAACCGCAACGAAAGCATCGCCTCGCCCTGTGAGCAGATCATGGTGCGCACTCGCTCAGTGGCGTCCAACACGACGGACGTGGCCCTGGCCACTGATCCCGAGTGCCTGGGGCCCTGCGAGCCCGGGACCAGCGTCAACCTGGAGGGCATTGTCTGGCAGGAGACCGAGGACGgtaTGCTGGTGGTAAACGTGACCTGGAGAAACAAGACCTATGTGGGAACCCTCCTTGACTGCACAAGGCACGACTGGGCCCCGCCAAGGTTCTGTGAGTCCCCCACCAGCGACTTGGAGATGAGGAACGGCCGTGGCCGGGGGAAGAGGATGAGGCCTAACGGCAACACGCCTGTCAACGAGAACAGCAACTCCTCAGACAACAAGGGCAGCGGCACCAGCAAGACACGCGCCGCCAATAACAGCAGCAAGAGCCGGCGGGGCAGCCAGACGTCGTCGGAGCGCCGCACACCGCCCAACAGCAACACGGAGGATGTCAAGGCCAGCTCGTCGTCGGCCAACAAGCGCAAGAACAAGCCCGCCTCGGACATGGAGCCAAACTCCAGCTCTGAGGACACCAAGGGCAGCAAGCGCATGCGCACCAACTCCAACAGCGGCCCCAGAGGAGTGCCCCACACCGTCCTCCCCAGCATTCCCACCATTAAGGCAGAGCCCCTTCCCCCGCCACAACTGGACCGCAACTGCCCTTCGCCAGTGCTCATCGACTGCCCGCACCCCAACTGCAACAAGAAATACAAGCACATTAACGGCCTCAAGTACCACCAGGCCCGCGCCCACAACGACGATGACATGAAGTTGGACATGGATGGGGACAGTGAGTACGGAGAGGACTCCACTCTCCACCCGGATCCGGGCAGCTGCAACGGTGCCTCCATCTCTCAGAAGGGCTGCTTGTCCCCGGCCCGCTCAGTAACACCCAAGGGCAGGGGCTTCGAGGCCCAGACTCCATCGCCCTCCTCTGGGAAATTTGGCTCCAAGCAGAGTAAAAAGAAGCCCTGCGAGGCCGACCCGGAGGCAGTTGGTATGGCCATAGACGGCTGTGAAGACGGGCCCTGCCTAACAGATGAGGCCAGCAATGACGGCATGGACGACAAGAAAGACAGGGCCAAGAAGACGGGTAACGGCTCCAAGGTGGACAAGCTGGCCCAGAAGGGCATGAAGTCAGCGCGGCCCATCGCCACTGCCATACCACCTCAGCAGCTGTACTCCCTACAGACGGCCGGTGGCTTCCCTGCAGCCAGCCCCGGCTCCACCCCTGCCTTGGGCTCAGTGGTTCAGTCCATTCCCAAGAGTCCGCAGCTGAAAGCCATCCAGCCCAAGCCCTCGGCCCCGGGAGACCCCTCGTCTGTGAACCCAGCTCTGAGCGGCTCGAAGGACAAGAAGAAGAAAgacaagaagaagaaagaggcGGGAAAGGAGGGAGACAGCCCCAAAGGGCTAGGGAAAGGGGGGAAGCCGGAAGAAGGCAAGAGCCCATACTCTGAATCCTCGGACCCGGGGAGCAAAGGTGATGGACTCCTGAATGGCTCATCGGACCCCCACCAGAGCCGGCTGGCCAGCATCAAGGCAGAGGCGGACAAGATCTACAGCTTCACTGACAACGCCCCCAGTCCATCCATCGGTGTGGCCAGCAGGATAGAGGCTGGAGGCATGGCCCAACCCCTCACCCCGCTCCACGTGGTCACGCAGAACGGAGCCGACAATTCCTCAGTGAAGACCAATAGCCCGGCCTACTCGGACATCTCAGACGCGGGCGAGGACGGCGAAGGTCGGGTGGAGGGCGCCAAAGGCATCAAGTCCGAGGAGCAGGCTATCCGAGAGGGTGCCAAGAAGGCCCTGTTCCCCGCCCAAACGCCCAGCAAGGAGTCCCCCTACTACCCCGGCTACGAGACCTACTACTCCCCGAACTTCGCCAATCCCAACCCCAGCCCGGGGGTGTCTGTCACGGGGGCCACACTGCAGGAGGGGGCCCAGGTCAAGGTAAAgaaagaggagcaggaggagccagGCGATGAGGACCGTAAGGTCAAGCAGGAGCTGCAGGAGGACCGTAAGCCCGAGATGGGTGCCTCTGGACCGGGGCAACAGCAGCAGGCCTCAGTCATCCAGCAGCGCTCCAACATGTACATGCAGCCTCTCTACTACAACCAGTATGCCTACGTTCCCCCGTACACCTACCACCCGGACCAGGCCTACCACAACCACCTGATGAACACCAACCCAGCCTACCGGCAGCAGTACGACGAGAGGCAGCGGCAGGCAGCAGCAGAGCAGCACCGCAACGCCGAGAAGAAATCGGACGCTGCTGGAAAGGACAGGGATCGAGAGGGCTCCTCGGGGAAGGAGCAGAGTGAGGAATGGAAGCAGAAGGCTTCGGTGCCCCCCACCCTCTCCAAGGCCCCCAGTCTCACAGATTTGGGCAAAGGAGGGCCACACCAGGGCAAGCTGTCCAAAGATCCCTCGTCTTCTTTGGAGCAGGCCAAGTCATCGGTCATCATGCCCAAGGGTGAGGATGCCAAGGCGCCGGCCCAGCAGGCCGAGGGGCTGAAGATGAAGCTGAGCGAGGGAGGGCACCATGGGAAGAGGGAGGAGCTCAAGGCGGGCATGGAGTCGGGCAGGCCCTCGGCAATGGAGCAGGGCATGTGGTACAGACAGGAGCCTGACTCGAGGCTGTGGCCTTACGTTTACCCCAGCAAGTACCCTGAGGCCCAGAAACCACAGGACGAGGAGCGGTGGAAAGAGGAACGCGACAGGGAACGGGAAAGAGACCGAGATCGAGCAGAccgagagagggacagggaccgAGACAGGGAACGGGACCGAGACAGAGACCGAAAGGGCAAGGAGGGCAGGGATGAGAGGGCTCGGTCCAAAGACGCCACCCCCAAGGAGGAGAGCAAAGAGGGGGCTGAGCCCCGGTCGTCGTTGGCGGCCTCTGAGGAGCACCGGGGGATGGTGAAGGACCCGAGGGCCACTGCTGCCCACATtcagttctcctctcccctggccCAGCACCAGGGCTACATTCCCTACATGCACGGAGCCTACGGCTACAGCCAGGGCTATGACCCCAGCCACCCGGGCTACCGCGGGATGCCCTCGGTCATGATGCAGAACTACCCTGGTTCctacttctccttctctccctacgGCAGTAAAATGGGGCCAGGCGAAGAGGGCGGTGAGAAGGCGTCGCGCGCCAGCCCCACGGTCAGCGGCAAGTCCGCCTCAGAGGCCAAGGCCCTGGACATCCTTCACCAGCATGCCAGCCAGTACAAGAGCAAGTCGCCGACAGTCAGCGACAAGACCCCCTTGCACGAACGGGAACGGGAGCGCGCCGCTTCCGAACGAGACCGAGACATAGACCGGCCGCGCTCCTCACCCTCGCAGCGCATCCTGCCTTCCCATCACCACCTGGGCTACCCGCTTCTCTCGGGGCAGTACGACCTGTCCTATGCCACAGGTCTCTCCTCATCAGCCATTGTTGCCAGTCAGCAAGCCTCCGCCCCCTCCATGTACCCCCCTGCACGGAGGTGAGAATGGGAGACCTGATTGGCTGACCTCAACCTTGCCTGGAGCCATGTGACTGGATCACATAAGGAAGCGTGCTGCGGCGCTCGTTTTTTAAACATCAGTTCAATGGTGTTTGTTGTACTTTTAGTTGATTTTGCCTGGTTGTTCCGGCTGATCTGGTTCCTCCTCCCTCAGCTTCATTGATGGCCACCTCCACAGCAAGGCTTCCTGTGGCTTGGTTGAGGGCTCACCGAGCCCACCTCCTCTGGTACCGCAcggccaaccaaccaaccaaccagccagccagtccatTGACTCCTTTGCACTGCTGAGACATTCACAGGAAGGACTAAAAGGCCCGGAAAAAGGCCTGATGAGACTGGCACGTTCTGATGGGGTGAGGCCCATCGACAGCCATTTTGGAACTAGAGAGTGCAAAAGGGAGAGGAGGTTGATCAGAAACAAACTGGATTAAGTTTGAAATCACTACATGGAAATATGGACTTAATGGATTGTTCACGGAACCTGGGCCTTAGCGTAGTAGAGTTGCAGCTTAACTTGAGGAAGTGGGGTGTTTCGTCCATCCACCAACCTACCCACTGACCCTGAGGACATCTTGAGACCTTCATTGCAATGGACCCATTTCTTTTTCGGTTGTGTcttttattgggggggggggttgttgtttGGGCCAGAGGAGGGACCTACTGGTGTCCCCATCCCTCTCCACCACTCTGGGCTTTCTATGCAAGCCGAAGCTGCTCATCTCCATACACTGACAGAAAcagtcctcctctctgtctgttcagtttCAGGGGGAGGAACTTTCAAGTTcacaatgtttttgtttttttgtgaaaAGTCATCATCCGCCTACTTGAGTTTGTTCAGAGCGTAAACAATATCCGTGTTAGTTTTtttttgtgcttttttttttGTATGAGGCTTTTGTGCGGCGTTCGTTCCACGTCTTGGCTTGACTACCTTGTTTCCATCTCACTCTGACCCAGTAAGGAAACTCCCTTGGCTGTTTGCCGCTGCTTCGAACACTACTGGCCTCTCTCAGTGGCGTCGGAGGCGGCAGCTGTGTCGCGGTTTTCCTTTTCCAAAGGGTCATCCAGTTTACAAAGCAGCACCAATGCATCCGCTACGGCTACAGCTCCCAGCTGCTCAGCGAGGGCCCCGCCTTAGAGGGAGAGGACATATCTGTGCCAGAAGGTATTTTggctcagagagagaagaggaacggagggggaggagaggagtacagATGCACCATTCAGGGGCTCTCCAAGCTCTGTGACCCggaaagggaaggagaaagatGCACTGATCGGAAAGGCCGTCTGGATACTTCAGATGCGACCTCTGGTTCTATAGAACCATCTATCCAAGCCATCCATCCTCACTGGACACTGCAGAGgctggaagaggagagagggtccATAGAGCCATCCATCCAGCTCTTACAGTACATATGGCATTTGTTTTGGCTGTTGTGGGCCCCAAGTGTCAGTTTGTGGACATGGAAGCTGTCTGGGACCCACAGGACTTTGTATGTGAACAGTTGGCAACTGTCTGCAAGCCACAATCTGGCTACTGCTGCTAGTCTCTCACCAAACTGCATCATGGGATGGCTGCAGTCCTCCCTCATCAGTGGACATCGAAGAACACAGAGGGAGGCTCTCTCCAGAGCTGTCAATGGATGCTCAGTGGATATGGCAGCTGCTGCACTCGCTCTCCCTCTGATCTAGTGTGTAGTGCTGGAGAGACGGGCAGCTCACTCCTGTATATTTATTAGAGTACTCATAGTCATGGAGTGCTGTGTTACTGGGAGTTGGCACATGCCCCTGTACTATATTTGGTGAATGAAAGCAATTGCAAAATGGAACCTCTCCTGCGGGCCTACATCCCCTCCCATCATATCTCGCTCTCCTTTCCAACTAtctctgtcgtgtgtgtgtgcctgcatggtGTAAGACGGCACTGTAACGCGTTAGCCCAACACATAGTCCTTCCCAGCGGAGCGAGCCGTGTGCACGTTTGCTTTGGGACACTTCCTATCAGCTCCTTcccgcccttctctctctctcgctctctttttccccACACGCACTCACTATTGTGGTTTTCTGTATATAGTGTACAGAGGAATTATTTTAAAAAGGTTTGTTCGATGCTATTGAAAAAatgtccttttttcttttttttttggtctGTTAGCCTTCTCTTTTTTTCCCTAACATTCTTGATATAATATGACAAACTGTAGCTGACGTAACAGCTTTAGAATTGAAGTGTTGTGATcatttctttccctccctccctggaccTCACCCCTTCAGAAGCTTGTTGTCCCCCCTCGAAGCCCACGACGCCATTTTAGTCCCTTCTTCGCGCACGTTCCCAAGCCGCCTCAAGGAAAACAATGTCACATGTCAACATGTCATTGTAACCTTCACTCCTTTGTTGTCGTTGTTTTTTCGGGTTCCACGAGATGCCGATCGTGGATGCAGTTTGTTGGCTGGGGAAGTTGGCACATGATTACTTTCTGCCGCGACAGACAAAGTAGAGGACGGGAGCGAGACAGGCTGAGAGCAGAGCTGCTGTCCAGAAGGTTTGATAGAGAGGTAAAAACACAGCAGATTCTCCCACCCGGTCCACCCCTCTCTCGTTTAATGGTGCCCATCGATCCCAACACCGCCGCACAGCGCCCGCCCCCGCCCGCTAAAAACAGTCAATCTGATTTGCTCTGATGCTTTTATTACCCTTCATGGATCCGGCTTGCTCAGGAGCGCAGCACAGAAAGTCTGAAATAATCCATTTGATTAGtggtttttgtattgtttttttttactaggcACAGGGGAGGGTATTTTACATTCACCATTTAGCAGGTTTTACTATATCATTTCTTCCATCCTAGCCAATTGTCCTCATCTGCTTGCATGCTCCTCCCCtatatcaaggtgttttggtacttcTTTTATACACTATGTTTTTCCATGTGCTAACTTCCTACTGTACCACAGGTCGGTATAGTCTAATAGTAGATCCTTCCCTCTATtcaccattcatagtgacaatagtggtaggtggattgtttgtccagatctgcaataggTTAACTAGCAATCATACCACACCAAAAAAATCATTCAGAGCTGCACCAATTTTCTATATAAATCCACAAGAACATAGAGGAATAGCTGATAGGCAGTGGAGAGGCCAGATGTGTCATTGCGCATGAAAGAACCGTGAGCACATGAAGCTCCCCTATAGATCTTGTTTAGGAACAATACAATGATTCtaccctagactagcctacaacaccacaatgcatTGAATAATTGCATTCATGTTTTCAAGTGACTACAACATTCTACTCTAGGCTGTAAACTGTAGTGGAAGTGTCATTTCAATAACAGCGCAAAATCTCTGTTTATACGAATGTTTTCATtccatttggatcagttgtggATCTAGAAAagcacagtagcaggccagtctaGCTATATTTTTTCCGTCTGATACCGAATGGGCTGTCTGTTGCggatcatcattctcccaagtGGTCCTATAATAATGTAGCCACATAGGCctatgctcccagcaggcccagtgaTTCCGGAAAGATTAACCTGCGTTCTGCCTCCTCTCTGATCCGAACGGCTATTCCTCGTGCAACTAGAGCCATAGCGCttcaatatagcctaaatatttgTCATTTCATTTTTATGTatggcatgaacacaaccagtcacaacGTTTTAATCTGATTAGGCTACATCAAAGGTCTCCCGTAGGCTGCCTTTGCACGTCGGTCCACTCTGATATAATTCCGGCATCCGAACTGTGCACTggctattttttatttaattgaaccttttctttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctacccccgaACCGGATGATgcctggccaattgtgcgccgccccattggactctcaatcacggccggttgtgatacaccctggaatcgaaccagggtctgtagtgacccctgcgccactcaggagcccatttGAGGACTAGAAAGAgccatctgttacaaaacaccaaaatgTTTAATAACATTGGgagattgtcaagccaagcctTCAATACTGGGTACAACGTAGGGAGGGATGTGTTTTCCGTTTGCCGAGATCGACATAATCCATTTAATTTTGGTGttgaaaacacaaaacatgatgtTGAAGGGCCCGAAATTGGTCATCCGTGTGCAGTTATGCTTTGCttattggttgtgtggtgcattggcacagaaacctgttgtTGGAAAATTAGTTGCATATATTTTCTATAAATATagcatcaaaatgttgaaaatctgatttCCCCCGAGCTGATCATTGTCTGCCGGACTCTGATTGTAGTGTAATGAGACCGGCAGGGAGAATCTCGTCCGTGGTGGTCGGAAATCCCTGaaccttctggcccgtagccctgACTGTGACGCAAACGTGGTGAAGTCTCCCCGTTTATAAAGACGGGTCGCTacagttattattatttgtgGTTGTAATCTTTTAATGGGGGTGTTATTTCAAGGGTGTGCGCATTTTTTTCTAAAGTACAAGGTGAGTGTcgtgaaaagtttttttttttttttttttttacgttgggggagggggggggtagcATTATTTTCTCACCACATGACTGTTAATGCTCAGCCATGATTGGATACTGGCACAGATTAATACTGGCACAGATTTTTCTGTTGTTGACATGTGTCCATAATACAATGGGGGAGGAGTTAGTGTTTTGGTTTTAATCAGTCTGTACAGAGTGAGACGGACGTTGGGTGAGGTCATATAGTAATAATGTCATTTTCTGCTGTTCTACGTCTCATTGTTAAACCAGATAGATACCCTGTGCTGGTGGCAGGCTGTTAAAAATGATGAGGGGAAGGGGAAAAAAGCACTTGATTTTATTTTTCGAGAATCTAGTTTTGCGGATCTTTTTTTTTAGTACGTTGACACCCGCCAGCCAGAGAAATGACTTGTTGATCATACTCCCACGGGCAGCCATGGTTGAGGCGTCGTCTCAAATGGTGCTTGGGTAGTCGATCCTTGTGTTCCTCCCGCCGGGGGAGGAGGGAATGTTCTTGTGTGGGATGTCCTCTTCCTGTTCTCTATTCATAACCCTGCCCCCTAAACCTCCCCTGCCCTATCACACTCAGCCCCGCCCCCAGAGCAGTGGCTCGGTATCAGTCATCGGTACTTGAAAGAAAGATGTTTACagcttcttctttttttattGCTAGGTTTTGTTTTGGTTCATCCcccacctcttctcctcccccgcTGTCCTTTCCCCAAGGGTTTCTCTCTTATGTAAAGTGTACATTGCcacatttcgttttttttttatatacaataCTGTAACTTGCCTTTGTACATTTAGGCAAAAAATAAACCTTTCTATGAGACAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182778 lncRNA upstream 185542 55185590 ~ 55205725 (+) True G160184
TU182673 lncRNA upstream 313852 55010209 ~ 55077415 (+) True G160082
TU182721 lncRNA upstream 317164 55073529 ~ 55074103 (+) True G160127
TU182648 lncRNA upstream 408783 54978910 ~ 54982484 (+) True G160061
TU182632 lncRNA upstream 449586 54941100 ~ 54941681 (+) True G160045
TU183151 lncRNA downstream 344059 55770367 ~ 55770752 (+) True G160508
TU183011 lncRNA downstream 401452 55827760 ~ 55829632 (+) False G160381
TU183012 lncRNA downstream 401452 55827760 ~ 55829632 (+) False G160381
TU183013 lncRNA downstream 401452 55827760 ~ 55829632 (+) False G160381
TU183015 lncRNA downstream 401452 55827760 ~ 55829632 (+) False G160381
XR_005037089.1 mRNA upstream 367082 55000439 ~ 55024185 (+) True LOC118940499
XM_021565626.2 mRNA upstream 415118 54951901 ~ 54976149 (+) True LOC110491832
XM_021565598.2 mRNA upstream 446487 54852812 ~ 54944780 (+) False spg11
XM_021565661.2 mRNA downstream 52239 55478547 ~ 55535685 (+) False LOC110491849
XM_021565670.2 mRNA downstream 54318 55480626 ~ 55535685 (+) True LOC110491849
XM_036950868.1 mRNA downstream 166353 55592661 ~ 55819518 (+) False myo9ab
XM_036950837.1 mRNA downstream 233924 55660232 ~ 55819518 (+) False myo9ab
XM_036950830.1 mRNA downstream 233925 55660233 ~ 55819518 (+) False myo9ab
TU182462 other upstream 662407 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1037879 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 1369363 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 3567085 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 3970145 51420847 ~ 51421122 (+) True G155541
TU183214 other downstream 519835 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 818736 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 1622006 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 2501842 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 2789369 58215677 ~ 58216383 (+) True G163660

Expression Profile