RNA id: XR_002468918.2



Basic Information


Item Value
RNA id XR_002468918.2
length 795
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110491875
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55676049 ~ 55698528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGGGAAGTGAGGTATGTTGAAAGCTTGTGGAGCAGAGCTTTGTAAACAAGAAGGGAGTAATGAAGTGATCTACATTCTGATACAGGATGCAGTAcatcagtagaacacACTGGACTCTCCTCCGCCAATCATagaaggagaatggtctaattcctcccatcaaaaagagagctggcccaagcaagcaCAGGTTACACCTAAAGCATGAGGAGCGTGACCTTCATCAACGACTACGCAGAGGATAATGCAATAGTATTATCAGGACGCCACCTAGGACAAAAACACTTGGTGGAAAGCTGCTGATGCCATGTGACAAAAGCAGCTCTACAAGAAATCAATGACAAACCTTGcttcgatgctctggagcctggtgtcGTCATCACCAAGCGTTCAGACTCAgtcgggaccaggtttcagctgctgcgcaacgctgacatcatagatggtctgcctgtaGAAGCACCgcctggactggacacagcttGACAAACGTATATTTTTGAGAAGATCGGGGAGTTTTGCGACgaagaggctatggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtggttcggaaggaccagtcatcagcactatctgcagtgcctctattcacATGACTCTCTCCATATGTTGctttttatttattatatattttatttacccctgattgtatgcatatCTGCCTCATCTATCatttgtttcatgagctgaaataaaaagatcacagaaatgttcaatACGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU183912 lncRNA downstream 60332 55615374 ~ 55615717 (-) True G161226
TU183859 lncRNA downstream 126563 55548531 ~ 55549486 (-) True G161178
TU183764 lncRNA downstream 249878 55423239 ~ 55426171 (-) True G161100
TU183444 lncRNA downstream 699932 54967731 ~ 54976117 (-) True G160787
TU183399 lncRNA downstream 774600 54901133 ~ 54901449 (-) True G160745
TU184096 lncRNA upstream 117364 55815892 ~ 55819433 (-) True G161396
TU184067 lncRNA upstream 133604 55832132 ~ 55857297 (-) True G161371
TU184111 lncRNA upstream 159828 55858356 ~ 55858644 (-) True G161411
TU184112 lncRNA upstream 160370 55858898 ~ 55859175 (-) True G161412
TU184139 lncRNA upstream 237143 55935671 ~ 55943565 (-) True LOC110491905
XM_021565648.2 mRNA downstream 675015 54978917 ~ 55001034 (-) True si:ch211-284k5.2
XM_021565587.2 mRNA downstream 823905 54847592 ~ 54852144 (-) False ciao2a
XM_036950753.1 mRNA downstream 1151049 54521142 ~ 54525000 (-) False LOC110491804
XM_021565541.2 mRNA downstream 1213212 54458665 ~ 54462837 (-) True fem1b
XM_021565490.2 mRNA downstream 1336214 54303365 ~ 54339835 (-) True coro2bb
XM_021565703.2 mRNA upstream 129228 55827756 ~ 55840888 (-) True mpi
XM_021565812.2 mRNA upstream 237121 55935649 ~ 56006744 (-) False LOC110491905
XM_021565783.2 mRNA upstream 237121 55935649 ~ 56006745 (-) False LOC110491905
XM_021565793.2 mRNA upstream 237121 55935649 ~ 56006745 (-) False LOC110491905
XM_021565804.2 mRNA upstream 237121 55935649 ~ 56006745 (-) False LOC110491905
TU182463 other downstream 947189 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 1407696 54257426 ~ 54268353 (-) True ambra1b
TU181691 other downstream 1704710 53969443 ~ 53971339 (-) False cd59
TU181692 other downstream 1704710 53969443 ~ 53971339 (-) True cd59
TU181650 other downstream 1818497 53856686 ~ 53857552 (-) True G159120
TU184134 other upstream 237143 55935671 ~ 55943565 (-) False LOC110491905
TU184572 other upstream 602827 56301355 ~ 56302095 (-) True G161823
TU185501 other upstream 1128768 56827296 ~ 56830576 (-) False G162657
TU185596 other upstream 1416039 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 1541751 57240279 ~ 57241372 (-) True G162897

Expression Profile