RNA id: XM_021565703.2


Basic Information

Item Value
RNA id XM_021565703.2
length 3004
RNA type mRNA
GC content 0.47
exon number 8
gene id mpi
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55827756 ~ 55840888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacgcggcatagGATGAGCCCATGGCCATATAAAGACGTCAGAACTACAGTGATAGCCGACGTTGCAGCCATGGAGGAAGTAAGAGTATTCCCGCTATCCTGTGCAGTGCAGAACTATGCATGGGGGAAGGTCGGTCTGGACAGTGAGGTGGCCAAACTGGTTGTTGGTGGGGATACCTCGGCTGTCATTGAAGCTGACAAACATTATGCCGAGCTTTGGATGGGTGCTCACCCCAAAGGAGACGCCCTCATCAAGGACAACCGGATAGCCCAGAGGACGCTCGGTCAGTGGATTGCAGACTACCCAGCATGCTTGGGGTCAAAGGTCAAAGACACCTTCCAGGGCCAGCTTCCCTTCCTCTTCAAGGTCCTGTCGGTCAACACCGCTCTGTCAATACAGGCCCATCCGAACAGGGAGTTGGCTGGACGGCTCCATGCTCAGTTTCCAGAGCATTACCCTGACAACAACCACAAACCTGAGATGGCCGTCGCACTCACCCATTTTGAAGGCCTCTGTGGCTTCAGGCCCGTGGAAGAGATCATTGGCTTTCTCAAATCCGTGCCAGAATTCCACGCTCTTGTAGGGAGTGAGACGGCAGAGGAGCTGGTGAGCAGTAGAGGGGAGGCGGGTCGCACCTCGCTGGCCCTGAAGAAGTGCTTCACCCGCATGATGAACTGTGAGAAGAAAGTGTTTGTGGACCAGCTGAACATGCTGGTGAAAAGAGTCACTGAGGAAGCTGCTGCAGGGAAGGACACATCAGACAGTAACAGTGAACTGTTGCTCCGGCTCCACTCCCAGTATCCGGGTGACATCGGCTGTTTTTCCATCTACTTCCTAAACCGCATTGTGCTGGAGCCAGGCGACGCCATGTTTCTGGGTGCCAATGAACCGCACGCGTACCTCAATGGAGACTGCATCGAGTGCATGGCCTGCTCAGACAACACGGTGCGCGCCGGCCTGACGCCCAAGTTCATCGACGTCAACACCCTGTGTGAGATGCTGAACTACAGCCCCGCTCCAGCCAGCGCCAAGATCTTCCCCTCCATACAGGACCCCTCAGACCCCTTTGTCTACCTCTATGACCCCCCTGTTCCTGACTTCACTGTCATGAGGATACAGgtGCCAGACTCAGTCAGGCAGTACACGGTGGCCCCGGTGGACTGTGCGGGCATCCTGCTGGTGATTGAGGGCGAGGCCACCGGCACCTCCGCCGCTGCCCTCTCTGACATCACCCTGAGCCGGGGCACTGTCCTCTTCATCTCAGCCAATGAGAGCGTCTCCCTTCACATCACCTCCCCCTCCGGAATGACTATGTACCGGGCCTGCAGTCTCCTGTAGCCCCAGGCCTTCTGATAATGTCACCTACCAACATCAACCCAACCCGTGGTTCTCCCATTCGTCATGCCGGGGTGTCCCCTGACATAAGGCCAGTAGTGATAGACTGAAGATGGCCTACTAACAGTTTTAACCCCTCTTTAACTGTAGTCTATGTGCAGTTCCATTCATTTTTCTCAGACAATCGCCCTGACAGGTACAGGAACATgcacagcttgtgtgtgtgtgatacacgCCCTTGTGGTTTGTGTACTCGCTGTGGTCCTTTTTATTCGGCCCATGTTTCTGTGAAGGTTTACACAGTATCGGTGATTATGGAGTTTTCATTGGTACAGTATGCCTCAGCTCACATCTCGCTGTAAGTGTCACATACTCTGTCGTTGCTGATGGTTTTTTTAATTGAGCATGTTGTAATTAATTACCTCTaagctttttttttttcagtGGGGGAAATCTTCTGTTCAATAGTAGTGCTTTTAAGACAATGCATCATAACAAAAACAGAGTATTTTAAATATATCAGCTGTATTGGGAACATTTGGCGTTTTACAGTATGCTGAGATTCCTGTGCATGTTTGCGGAACAAAGGCACCTGCCCATTCACGCATGCATATTTGCGCGCCGCATACATAGTGTACTTACAACTAGAGCATAGAGTAAGAATGTATAGCTACTGTATGGGGAGGCCTTTTCTTCAGCTGGATCACCAACATTGAAGTTGGTTTAGTTGAAGAAAATGTATGCTGTAAGGCTTAAGCATCATGTGACCATGCAATTCAACAGAAATGCATTCAGCAGTAGTCTGGACTGAAGGTGAGCTGTACTGTGTCAATGGTAACACCTCACACTCTATTACAGGATACAAAGTTGGTGTTTGAGAGGGACTGCATTGCAGTTGGTGACTGTAGACTGCCGACTCATCTTGCatcctaaatgactactgattATAACTTGTATAGCAGACAGTCTGTAGTCGCAGACTGCAATGTAGTCTCTCAAACACTCAAAATAGCTTTCCCCAAAGGTCAAAAAAGTGAAATTTTGTATGTTTGTTCATTCATTTTGAATGAAGCTCTGTTGGGTCAGGCATGTCTCCTGGTTGGTGTTCATTAGAGCACATCGTAGCAAAAGGAAAATTAGTTTCTTATTGGAGAAGTACTGATTGTACCTCCCCGTTTCTGTTTTGTGCTTAATGAGCATGACCCTGGTGCTTTCAATTGAACAGCGATGATCTACTTACGATTTGTGAATGAAGGACGGGAACAGAACGATAACTTAAATAATTTGTTCTGAACTTGTTTGTATGCCAACTGGTGTTGTCCAGGATATTTTAAATTACATGAACGGTTTGCACtacaatagtttaaaaaaaatatatatatatattatatatatatatactagttTGCAATCAAACCTACAGTagtaggtgtctgtgtgtgtatgtgtatgtatgtatgtatatatatatatatatatatatatacacagacacCTACTACTGTAGGTTTGATTGCAAACTAGTCTATGGGTTAAAGGTATAACGGTTTTACTTATTTTTCAATAGGAGCTGGAATGAGAGCATGGTTTTGCATTTGACTATACTACAGTAGCATGGCTCTCTAGAGTGTCTGTATGTAAACCTAAATAAAACATTCTGTACTAGTG

Function

GO:

id name namespace
GO:0009298 GDP-mannose biosynthetic process biological_process
GO:0001889 liver development biological_process
GO:0090171 chondrocyte morphogenesis biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0004476 mannose-6-phosphate isomerase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01809 manA, MPI; mannose-6-phosphate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184096 lncRNA downstream 8323 55815892 ~ 55819433 (-) True G161396
TU183963 lncRNA downstream 129263 55676186 ~ 55698493 (-) True LOC110491875
TU183912 lncRNA downstream 212039 55615374 ~ 55615717 (-) True G161226
TU183859 lncRNA downstream 278270 55548531 ~ 55549486 (-) True G161178
TU183764 lncRNA downstream 401585 55423239 ~ 55426171 (-) True G161100
TU184111 lncRNA upstream 17468 55858356 ~ 55858644 (-) True G161411
TU184112 lncRNA upstream 18010 55858898 ~ 55859175 (-) True G161412
TU184139 lncRNA upstream 94783 55935671 ~ 55943565 (-) True LOC110491905
TU184195 lncRNA upstream 176575 56017463 ~ 56017842 (-) True G161484
TU184197 lncRNA upstream 183081 56023969 ~ 56024170 (-) True G161486
XR_002468918.2 mRNA downstream 129228 55676049 ~ 55698528 (-) False LOC110491875
XM_021565648.2 mRNA downstream 826722 54978917 ~ 55001034 (-) True si:ch211-284k5.2
XM_021565587.2 mRNA downstream 975612 54847592 ~ 54852144 (-) False ciao2a
XM_036950753.1 mRNA downstream 1302756 54521142 ~ 54525000 (-) False LOC110491804
XM_021565541.2 mRNA downstream 1364919 54458665 ~ 54462837 (-) True fem1b
XM_021565812.2 mRNA upstream 94761 55935649 ~ 56006744 (-) False LOC110491905
XM_021565783.2 mRNA upstream 94761 55935649 ~ 56006745 (-) False LOC110491905
XM_021565793.2 mRNA upstream 94761 55935649 ~ 56006745 (-) False LOC110491905
XM_021565804.2 mRNA upstream 94761 55935649 ~ 56006745 (-) False LOC110491905
XM_021565739.2 mRNA upstream 94761 55935649 ~ 56006746 (-) False LOC110491905
TU182463 other downstream 1098896 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 1559403 54257426 ~ 54268353 (-) True ambra1b
TU181691 other downstream 1856417 53969443 ~ 53971339 (-) False cd59
TU181692 other downstream 1856417 53969443 ~ 53971339 (-) True cd59
TU181650 other downstream 1970204 53856686 ~ 53857552 (-) True G159120
TU184134 other upstream 94783 55935671 ~ 55943565 (-) False LOC110491905
TU184572 other upstream 460467 56301355 ~ 56302095 (-) True G161823
TU185501 other upstream 986408 56827296 ~ 56830576 (-) False G162657
TU185596 other upstream 1273679 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 1399391 57240279 ~ 57241372 (-) True G162897

Expression Profile