RNA id: XM_036950922.1


Basic Information

Item Value
RNA id XM_036950922.1
length 4095
RNA type mRNA
GC content 0.43
exon number 9
gene id scamp2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 55841445 ~ 55857300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGCGCACTAAACTCCATTTCAGGAAGTTACCAGTGCGATAAAAAGGAGCATATCAAACGATAGGACGACTGTGTTTTGTTTATACTTTGAGGAGATCTATAAAACGCCATTAAAATGTCGGGATTTGACGATAACCCATTTGCAGATTCGTCCAATGTCAACCCTTTCCAAGATCCCTCAGTTACACAAGTGACCAACTCTGGTGTAGACCACATTGAGCAATTTAACCCTTTCCCAGACCATCAGACGGCTGGCCTATCAGGGCCCACCATTCCGGCTTCCACCACCCTTTCCCAGCCGGCCGTGCTCCAGCCGTCCACAGAGCCCGGCCCAAAGGCCACGGCGGCTGCAGCCCAGGCCAGCCTGCTGAGGCAGCAGGAggagctggagaggaaggctGCAGACCTGGATCGCAGAGAGCAGGCACTTCAGAGCAGGGGAGCCTCCACAGGCAAAGAAAACAACTGGCCACCTCTTCCCAAGATCTTTCCCATCAAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATTCCCGTGGAGTACCAGAAGGTCTGCAAGATGATTTACTATCTGTGGATGTtccacTGCGTGACTCTGTTCCTCAACCTGCTGGCATGTTTGGCCTACTTCACTGCGGATTCCGCGTACGGTGTGGACTTTGGCCTGTCCATCCTCTGGTTCATCCTGTTCGCCCCCTGCTCCTTCCTCTGCTGGTACAGACCCGTCTACAAGGCCTTCAAGACGGACAGCTCCTTCAgtttcttcttgttcttctttgTGTTCTTCTGCCAAGTGGTGTTGTTCGTCATCCAGTCTGTGGGCATCCCCAAGTGGGGAAACAGTGGTTGGATCGCCTCGTTCACCATCATCAGCACCAACAAGGCAGTGGGAGCCATCATGATCGTGGTGGCTTGCTTCTTCACCGTCTGCGCTGTGCTGTCAGTCATCCTACTGAAGATGGTGCACAGCCAGTACCGGCGTACCGGGGCCAGCTTCCAGAAGGCCCAGCAGGAGTTCTCCCAGGGCGTGCTCACCAACAAGTCCTTCCAGACGGCCGCCACCTCCGCAGCCTCCTCCGCCGCCTCCGGAGCTTTTCAGGGGAACAACTAGACCCAGGCCCGGGCTAACTTAACCCCCCAGATACGCCCTTCCCCTCTTCCATCCATCCCAACGCCCACCAACACACCACCTTTCTGGGATGGGGATGGATCCCCCACAACCTGCTGTCAGCAATCCCTTATAGGTCATACCATGGAGCCTCCGTCGAAGAAACCACCATTGACTTGACCAGCAGTCTGTCTGCCGGGGGTTTCCGTAAGGCCTGATCTGGGATCtgttctttttttaaatataagaGCTGTGGTCAcctgacagccccccccccccccccacacacaaaaaaagggcACTTGAGTAGGAAATTGTCCCCGCTGTGCTTTTTCCGAATGGAAAGTCGAATGATTGCGAAATCTTGCGATGTTTTTCAGTATGTGTGCACTTTTTCTTTTTTTGCAATGTCCTCTGTTCGTGTGTGTCGATGTTCtcttttaggtgtgtgtgtgtcctggtcgtgtcATAGAGAAGATGGCGTGTTTTGTTTGCTTTATGCATGTTGTCAATTCAGTCTTTGTGTATATACCTGCTCTCATGTCTGACTGTTGTTAAGTAACCACATGTTGGGACTCCAACGATGGTGGCTTTTCAGCATCCTTCAATTTCAACGTGCTAATGAAGAGAATGAGTGTTTGCGTTCAGTAGGGTGATACCTGAATGAAAAGCATCATGCATGAAGTTTAGTTTAGTGGGCACTCAGTCTAGAACTATGATAATCACCTAGGTTATTAGTTACCAGGGCTACTGTAATTATTAAATGCACATTTGCCATTATACTTGCGCATCACAATCTAATGTCCTTTTCAGATTTACACCATTTCGTTAGCCTTTTCAGACAGTTCTCGTCAAAACGAGGTACTTTGGTTTTCAATCTTTTCACATTGTAGAAAGTGCCTTCTGTGTTTGTCTGCTTATTGGCTTTGGCAATGAGAGACTGGTGTTGTGTAAGAATGGGTTGAATATATGTTGGTTTGTCAGTATATACTGTCCCATACAacttaaagggacagttcacccCGAAACCAAAGTTTTGTCATTTTCATATCCTCAAAGTGGTCTATTTCACAACGTCTGTGATATCACTACAAATGCATTCAAAGAAACTTTTCGGTCTCAATCCCAAACCAATGGGGATCTTAGTGCAGATGGCACGGAATAGACTCTGCTTACAATTTAAAGGCCCACTCTTTGATAGTCACACCTTTTACGGTATGGTGGCATCTGGCAAACTTGGATTTTGGCGTGGACTCTACCTTTAACCAAAGCTGTGACCTGTGCCTTGACCTGTGCCTTGACCAAAGCCTTGACCAATGCCTGTGTGAGGTGTCACCTATTGAGTTTGCCTCTGTTGCCATTGGTTCCTACGGTAACCAAGCCTTAACCTTTTTTTTATGGGGAAAATTACATGATTGAAGGAAGAATTGAAAGAGAATTGAGACAAATACCTTTTCGTAGTATCGTGTCGACCCGTGTCGTGTTTTCTTTTCACATTATTCTTTCCAGTACGGTTCAGTCAACTATGGAGGATGAGTAACCAGGCCAGTGCAGTACAGCTCAGCttagctcagtagtgtgaaaaaggTATCGGTTAGACTGACATTCCTAATCCTAACTACAAATGATTGCTTTGTTGTATTCTATGGATTTGCCACTAAGACTAAACGTGAACAATGCGAAATAGATTTTTGCTCcactttgattaaaaaaaaatatacttcAGGGGGAAGTGGTTGTCAGTCAAAGCTGGATAAGGTAGTGCTGagtggttaaaaaaaataaaagtaaagtATTTCTtaataaccaggtttccatccaactttTTGAATGAGTGTAAAGTAGAtgtttgatttttttatttaatttttttaaaatatcGACAGAACAAAAAACTCTAGGCAAGGTGGGCTCTTTTTATGGCAATGAAATGAATTACGCGAGCAATAGAGGTgaataataaccatcatatcgagagagagaaaaaaataaaaacttgggagtcatgttgtgtggtcctcccattaCTGCTCGTTGAGAAAACATGCAGTTTATtcggctacagatgaaataaattatgatgaacttcacagggtggtgaaagtgcaaggtgatgggcttgatgctcctttccaataaatattgagggtcttattttGGTGATttttggctgccgtttgacaaacatAATCTTGCtctttttgtccattttaatcATCTCATCGTGTAGTAGGttatacctgcactgtatctgcgagctgttggctagagcacacgtgCCAAAACCAGAATGGGCACATTCTCTGTGTAACGCAACGTTTGTTGTGACAAAaaatcagtagagttgaaaatacgatggaaacccattcctttttttttctttaaaaagaaaatgggaatttaaccgcaaaagttatttttatgtcCAATATGTCATCACGCCCAGCATTTTATCCACAAATCAATTTGATGGAAACGTAACTCCTGTGGGAAAATGTGTGTAGTATTGTTTTTGTGCGGATTTTTGAATATTCGGATGAAAATCTGTcgtcaattggatggaaacctagctactgtaacAGAATACATTTTCCCCTAAGTTTCCTAGAGGAAGACCAGCGCCTAAATTATTTGTGAATGGATTGATGTAAACTATCTATTTTGTCATTTTCATTTGTCACCTTCACAAGAGTATGTATTCATTGTCGGTTTAAATGTAACAATTGTCCGAGATCAACTAAGCAAATCAATAACTCTAATGAAGAATGTAATATTCAAGCTAATGGTTTACTAATGGGTAAATATTTAATTTTCTGAATCATTGTTACTTGATATTGAAATATATTTAGTTTTCTTAATATCTGTGTGAATATGACCATTTGCCTGCAATGTATTGGGAGTGGAGAATTATATATTGCCTTTTGTATTTCAATGTTAACTATTAACTTAGTGTCTATCTAATAAAAATGGTTGCTTTAATTGATA

Function

GO: NA

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183011 lncRNA upstream 11813 55827760 ~ 55829632 (+) False G160381
TU183012 lncRNA upstream 11813 55827760 ~ 55829632 (+) False G160381
TU183013 lncRNA upstream 11813 55827760 ~ 55829632 (+) False G160381
TU183015 lncRNA upstream 11813 55827760 ~ 55829632 (+) False G160381
TU183016 lncRNA upstream 11813 55827760 ~ 55829632 (+) True G160381
TU183234 lncRNA downstream 75827 55933127 ~ 55933810 (+) True G160589
TU183270 lncRNA downstream 143083 56000383 ~ 56001041 (+) True G160619
TU183286 lncRNA downstream 162042 56019342 ~ 56019605 (+) True G160635
TU184205 lncRNA downstream 174408 56031708 ~ 56031913 (+) True G161494
TU184276 lncRNA downstream 232519 56089819 ~ 56090069 (+) True G161559
XM_036950868.1 mRNA upstream 21927 55592661 ~ 55819518 (+) False myo9ab
XM_036950837.1 mRNA upstream 21927 55660232 ~ 55819518 (+) False myo9ab
XM_036950830.1 mRNA upstream 21927 55660233 ~ 55819518 (+) False myo9ab
XM_036950841.1 mRNA upstream 21927 55660233 ~ 55819518 (+) False myo9ab
XM_036950857.1 mRNA upstream 21927 55660233 ~ 55819518 (+) False myo9ab
XM_036950930.1 mRNA downstream 4122 55861422 ~ 55931584 (+) False LOC110491898
XM_036950939.1 mRNA downstream 4122 55861422 ~ 55931584 (+) False LOC110491898
XM_036950947.1 mRNA downstream 29240 55886540 ~ 55931584 (+) True LOC110491898
XM_021565842.2 mRNA downstream 175190 56032490 ~ 56056380 (+) False acanb
XM_036951010.1 mRNA downstream 175190 56032490 ~ 56056380 (+) False acanb
TU182462 other upstream 1112585 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1488057 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 1819541 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 4017263 51816510 ~ 51824182 (+) False G156000
TU177903 other upstream 4420323 51420847 ~ 51421122 (+) True G155541
TU183214 other downstream 88843 55946143 ~ 55947245 (+) True G160569
TU184425 other downstream 387744 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 1191014 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 2070850 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 2358377 58215677 ~ 58216383 (+) True G163660

Expression Profile