RNA id: XM_021565907.2


Basic Information

Item Value
RNA id XM_021565907.2
length 4555
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110491985
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56091212 ~ 56136350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CtcactctgacaccgcctatctTTCAATCTCACCAACCAACGCAGCAGCACCACACGGAGCAGCTGTGTTTTTGTCCCAAGAGttcaaagagagagtgaaagaagccACAATGAAGACCCAAATTCGTTTCGCGTTCTCCATACCACTCTTTGTAGTTTGTTTTCTGGTTGGTGCCCTTTCCACAGTGAATGgtGACTACTGTGAGGTTAACGTCTGCGGTAACGGAGGGATCTGTGTGACCGGGGCCGGAGCCCCCTTCATCTGTATCTGCCCCGACGGATACACCGGGGACACCTGCAACGACACAGAGGCTGGGCCCTGCAACCCCAACCCCTGCAAGAACGATGCCATCTGTGAGGTGACTGGCCAGTCACGCCGAGGGGACGTCTTCAGCGAGTACATCTGCACGTGCCAAGATGGCTTTGACGGAGTCCACTGCCAGAACAATGTGAATGACTGTGTCGGCCAGCCGTGCAAGAATGGTGGCTCCTGCAGGGACCTAAATGGAGACTTCAACTGCCGCTGTCCGTCCCCCTACGTGGGCAAGCACTGCCAACTGCggTGTATCTCTCTGTTGGGCATGGAGGGCGGAGGCATTGCAGAGTCTCAGATCTCGGCCTCGTCGGTGCACTACGGCATCCTGGGCCTGCAGCGCTGGGGGCCCGAGCTGGCCCGTCTCCACAATAAAGGCCTGGTAAACGCCTGGACCTCTGCCTCCCATGATAGGAACCCCTGGATAGAGATTAACATGCAGAGGAAGATGCGTTTCACGGGCATTGTGACGCAGGGCGCCAGCCGCATGGGGTCAGCAGAGTTCATCAAGGCCTTCAAAGTGGCGTCGAGTCTGGATGGGAGGACCTACACCGTGTACCGCCTGGATGGGCAGAAGAAGGACAATGTGTTTGTGGGGAACGTGGACAACGACAGCACCAAGACCAACCTGTTTGACCCTCCCATCATTGGCCAGTACTTCCGCATCATCCCTGTGGTCTGTCGCAAGGCCTGCACCCTGCGCATGGAACTGGTGGGCTGTGAGCTCaatgGTTGCTCTGAGCCCATGGGCATGAAGTCGCGCCTGCTCTCCGACCGCCAGATCTCGGCCTCAAGTGTCCACCGCACCTGGGGAATTGAGGCGTTCACCTGGCAGTCCTACTACGCCCGGCTGGACAAGCAGGGCAAGACTAACGCCTGGACAGCGGCCACCACCAACCGCTCCGAGTGGTTGCAGGTGGACCTGGAGTCCCCCAAGAGGATCACAGGCATCATTACCCAGGGGGCCAAGGACTTTGGAGCAGTCCAGTTTGTTTCTGCCTTCAAGGTGGCCTACAGCGACGACGGCCAGTCCTGGAGCATAGTCAAGGACGACGTCACCAGCACAGACAAGATCTTCCCGGGTAACAGCGACAACAACGTCCACAAAAATAATGTGTTCGAGCCTCCCTTCTATGCCCGATTGGTCCGCATCCTGCCGTGGGCGTGGCACGAGCGCATCACCTTGCGAATGGAGTTGTTGGGCTGCGATGAGTAGCCCCGTCCCCGGCCAAATCCCCTCCACTTTCCCTGCCCTTCCTCATCTTTCTCCTCCTTTCCAAAACCTCCTGAGCCACGCCTGCACTGCCTTGCTCACACCCGTAGAGGGCAGCAAAACACCAcgaccaccaccacaaccctgGAGAAGGTACAAAATTGACCCTAACCACTGATCTAGGGTCGGATAATGGTTACCACTGATCTAGCCCACCTAATGGTTACGGGTAAGATTAGGTaggggtaatctgatcctaggtCGGGTGCTGAAGGTCAACTTGTACGTCGAGCGCACAGACTACTGCTGTGTCAGCCGGAACTACATGGACTCTGAACCTGTCCTTCCTAGATCAGGGCCTTATTCAGAGttttagagtaggagtgctgatctaggatctggttCCCcctattattaattattattatttagaggcaaaactgatcttagatcagcactgctactgtgagacgctttatgaatctGGGCACAGAAGACTGAACCCGAGACCCATCGCTAGTGATGTACAATACAGTAGTAGCTAACTTGGCTGTGATGTTTTTCCAACTGGGAATTTTCACCTGACCATCCTGAGACACTGAAGTGCGTAGTAGTATTATCGAACACCCTCGTGTAGTCTTATCGCCTAGCCGTTTCCTTGATTCTGCAGTGCTCTGGAAGAGATGTTTTTGCGGGAgttcttgtttgtgttttatttCGTTGGGCTTCTTAACCAGGGAAAGACCCGTCGTGTGACTATAGGATTTATAAGATTGATTTGTATTTTTTGAAAAAGAAAAGGTATACCAAATGAATTTCACTTTGTTGACAAATTGATGGTGTTCGTTGACTAGTTGTGAATGCATTATGATTTATTAGCCATGTTTTTACTAAATGCAGTTTTCAAATAAGTAGCAGACCTAAGAAAAAAAATAGAAAGCATGTATAAAAAGCTGGAGAGAGACTCTTATTCTGTAATCTTGTGACATTGAGTGATATTCAAATCCCCAAATAGTTCAATGCAATCTTAGTTTATAATTCTTTGCTAAAGGGTATGTAAAAGTGCAGTAATACTCCTACAGTATGTGGTGTTGTTCTATAACTCAATCTGCTCTGATTGTGATGTCTGTCCTTTCATTAATGCACTGTGAGTTGTGACGTCAATGTAATGCATTTATTACTAATTGACTAATATTATGAAGTGACATAGAAAATAGGGGGTTAGCAAGTTGATGATGCTGCCAGATGTTTTTTTGAGATTAAGGCAGATCAATTCTAGCCTGATCCCAGAGATGTGCTGTCTTGACAAACACGATCATAGGCGTTGGCTAGACGGCACagcagatctggaaccaggcatATTTTCATATTATATGTGCTACTAATGTTGTTATAACCCTTATGATACACAGCTCAACTTAATATGATTTTGTTTTCCCCCTTTTTAAAAGGCACTTTCAGGGTCAAATCTGTAtaattgttttctgaggtaaATATGTGGAAACTCAAAGTTTTCTCCATTAAAGAAATAAAGTACTGATGTTGACAGACATATACAAGTAACTGccgaaataaaggaaacacttgagtaaatgagggatacaaatgatattgaaagcaggtgcttgcacacaggtgtggttcctgagttaattaagcaatgaaCATCCCAGCATGCTTAGGATCGTGTATAAAACTGCCCCATTGCTTAATAATGCCAATTATGTTGCCTACCATGGccagaagaagagatctcagtgactttgaaagaggggtctcaaaggagcatagggtgtttaaagggtgtgtgtctcagtcaccagatctcaacccaatttaacacctatgggagattctggagtggcgcctgagacagcgttttccaccatcaACCAAACACCAAATGACGGAATTTCTCGTGGAGGAATGGTATCACATCCCTTCAATTTGCTCCATTTATTCATTTTATTCGAGtttcagacacttgtagaatctatgccaaggcacattgaagctgttctggtggctcgtagaggcccaacgccctattaagacactttatgttggtgtttcctttattttgacactTCCCTGAAGATTGAGTGTTTGAGAACAAAGCGTTTTAATACTATGAATCTGTCATGTCACTGCATAGGAGAGCAGTTATATGGCTTCCATAAGTTATCAAGGGGCAGTTTTAGATTTTTGACATGATAGCAACCAAAAAAAGACATTTCTGCCAGTTAGTTTTTTTCTGAGCTGGTTATCCTACCTAATGTAAATACTTTTTGTAAAAATGTGTTCCTTGAAGTTGTAATATGTAAATGTTTTGCAGCAGACCAATCAAATGCCATCCATTTATCACAAGAGGACCAAATTGATGCGTAGAATTCGAAGCCTGTGGCCACACTGATAAGATGGAAAAGAAAAATCTAATTTAAAAAACGATTTCTATGGTTGCACTGAACGTAAGACGTGACATGGCAATCTGCATATTGCTCCTAGGTCATAGCTAGCATTGTCAAGCTCCCCCCATGAATTATGAATTACGGGTGTGTGCAATAAGAAGATTAGTTTTTGATTTGAATGAATATTAATATGAACAGCTGGAAAACATCGGCGATAGATATCCTCTTTTAAATGCATGTGAATAACGATGCATTTGCAAGGCTATGGAAAGGATTGTGGTGTCAGACTAATATATTTATAATCTTTGTAGACTGTTCCAAAATAGTTATTATCTGATGTCTGCATGCATTGTATTGACTATACTTTTTTATTTGATCCAACATAGACATTTTGATTATATTGTTTTCTCTGTACATTTTTCTGATTCGTTCATCAGACTCTAGTTATTCCCATTCTTTCATTTTCCACAATGTCCTGGTTTTATATGattcataaaaaataataatacaattgaTGTGTTTTTATGCGATATTATTAATATTGATCAGTTCTTGTTTTCTGTGTTTCTTAAAAGAATTCCCTTAACTCTCAAGACATAAACAATAAAGGATTTAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184318 lncRNA downstream 485 56090245 ~ 56090727 (-) True G161600
TU184260 lncRNA downstream 30118 56054756 ~ 56061094 (-) True G161545
TU184197 lncRNA downstream 67042 56023969 ~ 56024170 (-) True G161486
TU184195 lncRNA downstream 73370 56017463 ~ 56017842 (-) True G161484
TU184139 lncRNA downstream 147647 55935671 ~ 55943565 (-) True LOC110491905
TU184555 lncRNA upstream 136823 56273173 ~ 56273381 (-) True G161806
TU184559 lncRNA upstream 142759 56279109 ~ 56279411 (-) True G161810
TU184565 lncRNA upstream 155616 56291966 ~ 56292481 (-) True G161816
TU184567 lncRNA upstream 158745 56295095 ~ 56295463 (-) True G161818
TU184590 lncRNA upstream 177128 56313478 ~ 56313924 (-) True G161841
XM_021565872.2 mRNA downstream 7039 56067547 ~ 56084173 (-) True LOC110491965
XM_036951014.1 mRNA downstream 15040 56067547 ~ 56076172 (-) False LOC110491965
XM_021565880.2 mRNA downstream 15537 56067547 ~ 56075675 (-) False LOC110491965
XM_021565765.2 mRNA downstream 84465 55935649 ~ 56006747 (-) False LOC110491905
XM_036951015.1 mRNA upstream 35195 56171545 ~ 56177565 (-) True LOC110492010
XM_021565983.2 mRNA upstream 57328 56193678 ~ 56197480 (-) False LOC110492018
XM_036951016.1 mRNA upstream 57328 56193678 ~ 56197480 (-) False LOC110492018
XM_021565976.2 mRNA upstream 57328 56193678 ~ 56197521 (-) True LOC110492018
XM_021566005.2 mRNA upstream 62535 56198885 ~ 56207633 (-) True pdia3
TU184134 other downstream 147647 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 1362352 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 1822859 54257426 ~ 54268353 (-) True ambra1b
TU181691 other downstream 2119873 53969443 ~ 53971339 (-) False cd59
TU184572 other upstream 165005 56301355 ~ 56302095 (-) True G161823
TU185501 other upstream 690946 56827296 ~ 56830576 (-) False G162657
TU185596 other upstream 978217 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 1103929 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 1108031 57244381 ~ 57250107 (-) False LOC100135818

Expression Profile