RNA id: XM_021565922.2


Basic Information

Item Value
RNA id XM_021565922.2
length 3538
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110491996
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56146461 ~ 56170964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTATCGTCCAGAAGCATACAGCTCTTTCCCATAAAATATATGTTCAAACAAGTTTCATTGGTAAGGCAGAAAACGCGCTGAGCTAGTAAAACACGTTCTCACAcccctttgtttttgttttgagccgacttCGCCGTGGCCCAAAACTGGGCACCGAAAATTACCCAACATGTGACGTAGCGGTAACTGAGCTCCAATAAAAAATAGCTATATGTAAATCACCTCTTCTGCAGTAGGAAGTCGGGCTGCAGTTGCTAGGTGCTCGCGTGTTTCAACTCTGTTCCGCTGTAGTAAACAGTCCGCGACTACACCGAGCAGCTGTGCAATGTGCACAGAGAGCAACACAGCTTGTAAACATACACGCATaaacaatTGCTACTGCGTGTGTGCTGAAATGAGGGTTGTCGGCTGACTGAGGGCAGTCTACTTTTTCTGCGTGTTTCACTGTATCAAAACGCTGCCAGATTCTGAAATGCATGTCCAGGGGGTGACTGAGTATCATTAGTTATTGAACAAGACATAGGTCCTCTCTGTCAACCATGAGTGCACTCGTGGAGCCAGGCGATGTCCACACCATTGCCCCCGAGATGCCAGCCATATTTGATGGCATGAAGCTGGCTGCCGTAGCAACGGTGCTCTATTTCCTGGTGCGCTGTCTGAATCTGAAGAGTCCCACGGCTCCGCCTGACATCACCTATCGGGACACGCCCCTCAACCGCTATCTGCTCAAGTCCTGCCCCATCCTGATCAAAGAGTACGAACCACCGCTGCTGTGGGGGAAGAGTGGACACCTCCAGACTGCCCTGTATGGGAAGATGGGGCGTGTCAGCTCCCCAAACCCCTGTGGGGTGCGCAAGTACCTCCTCATGCAGGATGGGGCCACTGCCACCTTTGACCTCTTCGAGTCGCTGGGGGACCACCGCACTGGAGatgacatcaccatggTGATCTGCCCAGGGATTGGTAACCACAGTGAGAAGCACTACATCCGTACCTTTGTGAATCACTCCCAGAGGCAGGGGTACAGGTGTGCTGTTCTCAACCATCTGGGGTCCCTGCCCAACATCGAGCTCACCTCGCCGCGCATGTTCACCTACGGTTGTACGTGGGAGTTTGCAGCCATGGTGGGTTCCATCAAGCGGGCCTTCCCCCAGACACTGCTCATCGTGGTGGGCTTCAGCCTAGGGGGGAACATTGTGTGTAAGTTCCTGGGGGAGAACAGGATCAACCAGGAGAGAGTGCTGTGCTGCGTCAGTGTCTGCCAGGGATACAGCGCACTCCGGGCCCAGAAGACGTTCCTACAGTGGGACCAGTGTCGGAGGCTCTATAACTTTGTCATGGCAGACAACATGAAGAAGATAATCCTATCCCACCGGGGCAGTTTGTTTGGAATGAACTCGAGCAAGATGGAGGACGCAGACCTGAGCCGACTGTACACAGCTACCTCCCTCATGCAGATCGATGACAATATCATGAGAAAGTTCCATGGTCACGACACGCTGAAAGAGTACTACGAGAAGGAAAGCTGCGTACACTACATTCACAATATCAATGTGCCTCTGCTGCTGGTCAACTCCTCAGATGACCCTCTGGTCCATCAGTCACTTCTGACCATCCCACGCACACTCGCAGAAAAGAAGCCGAATGTGATCTTCGCCCTGACGCTCCACGGGGGTCACCTGGGCTTCTTCGAGGGGGCTGTGCTGTTTCCCCAGCCCCTCACCTGGATGGACAAGGTTATCGTGGGCTATGCCAACGCAATATGCCAGTGGGAAAGACACAGACCGCCCTGCCTGAGGACACGTCGTGGACTCTGTCCACAGGCCGACGggactCCTAGTTTATAAGGACACAAATACGCCCACCGGAGAAGGCCGAAACCTGTATTCTTCTCTTCAAAAGGGGGACGGGGATGATCTATGGGCACAGTAGCTCGCCTGACTTTGTTCTGACTATAGCTTTGCTTAAAGAAACACAGCATTCAGCTGCGAATGACATTCATTGAAAGCCTTTACCCGTGGACTCCAGTCAGTCGAATGTATGGCACTTTCTCCTCTAAACGTGGATACACAGTGTATCCTGCACCTGCTGGTGAACAGCTACCAGACTCCACACTGGCTTATTTATTGCTCTGTTCTGTCCATGGAAAAGACTGGAGAGGAGATTAAGCTTCTGTGTGCAACGTCCCAGCCAGCACCCCTTGGTTCTCACTTGGGTTGCTACTTGGTCCCGACTCTCCTAGCTGTTTGTTCCGAGTGTGTGTACTGTTGTCGTGATGTTGTCAAATGGGAGCTCTGGGAGGTTGAAACTCTGAAGGCTTTTGTTAAGCAGAGAAATAGAATTCCTAGAACagacattttatttttatgttaagCTTCTTTAGCTCTTTTTAATAATTGGGGCCAGGGTCAAAATCTGGTCTGGCCTCTAGTTCTAGGCTATTAGGCAATACTTTCCTGGTCAGGTCTGAGGGAAAAACTCCAATCTGGCCCTAGTGATAATATATTTTGTCTTCACATTGTGCCTCAAACATAAacataacaaataaaaatatttcaaaCCAAGAAAGGATGGCAATGGTTTAAAGTACTTCATTACTATTTTCAATACGCAGACAGAGTGTTCAAGGACCACACTCTGTAAATATCTGACATTCTGAGGAAGCACCCAATCCTACCCAGAACACATTAATAACAAGTTCCCATTGTCCTGTACTGTATTTTTAGTGGAACAGCCTCTGATATTCTCACTGGTTGGCTTGCACTACACAGCACTCCACTTCTGAGACTCAAATACATAGATTTTTATATATTGTAACTTCAGTTGTGAGTATAGGAATGTTTCTGACCTTTTCTAAGTAGTTGATTCTTACAAGCCGAGTGCACTGACTAAAGTCCTTAATCACAGCCACTGTGAGGCAAGGGTCCACTGTGCTATTTCAGTCATTCAGTTGGTTTGCCTGAGTCGCAAATGTTCAATGGTACAATGTATTCTGGCATGTACGTTTTGGAGATTTCACTgtaggaccaatggaatggtctaaaatgAGCAAACTCCACCCACCTGGGGCAACGGGCGACACAAAACAAGCGCACTCACCATTTGAGCATTGGTTATTTGAGTTGATTGATTTAACCAAGTAGGGAACTGATTGTCAAGGTTTGCCATGAACATTGTGTGTCTACCTGAATCATTGAACTCACCCAACAGCAAAGATGAAAATTTAAGCCACGTTTAGGTTTGTTGCTGTTGTGAAATAATATATAGGTATGCGCTACAGATGTAGATTCCAGTTGTCCTCAATTGAAATACCAAAACACCATGTGACTTGGTCTTCTTCCTTATATGGGCAAAGCCCCatgctttatttaaaaaaaaaataaacacagaaAGTTGAGGTTACCTTGTGTAAGTTTAGTCTGACAGCGTCTTTGTTCTCGTTTTCCCTTTTTCCATTTAATATTTTCGCTGTTCTTCTTAAGAGATATTTGTTGgaaactgtttaaaaaaataataaaaaatggtgTGGTTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184311 lncRNA upstream 14800 56130983 ~ 56131664 (+) True G161594
TU184276 lncRNA upstream 56395 56089819 ~ 56090069 (+) True G161559
TU184205 lncRNA upstream 114551 56031708 ~ 56031913 (+) True G161494
TU183286 lncRNA upstream 126859 56019342 ~ 56019605 (+) True G160635
TU183270 lncRNA upstream 145423 56000383 ~ 56001041 (+) True G160619
TU184388 lncRNA downstream 22730 56193694 ~ 56194674 (+) True G161662
TU184389 lncRNA downstream 25346 56196310 ~ 56197436 (+) True G161663
TU184396 lncRNA downstream 29142 56200106 ~ 56200510 (+) True G161667
TU184397 lncRNA downstream 29558 56200522 ~ 56201620 (+) True G161668
TU184453 lncRNA downstream 116851 56287815 ~ 56288182 (+) True G161715
XM_021565842.2 mRNA upstream 90084 56032490 ~ 56056380 (+) False acanb
XM_036951018.1 mRNA downstream 36864 56207828 ~ 56229077 (+) False LOC110492043
XM_036951017.1 mRNA downstream 39799 56210763 ~ 56229077 (+) True LOC110492043
XM_021566172.2 mRNA downstream 315733 56486697 ~ 56497109 (+) False LOC110492132
XM_021566180.2 mRNA downstream 315737 56486701 ~ 56497109 (+) True LOC110492132
XM_036951024.1 mRNA downstream 336672 56507636 ~ 56518535 (+) False LOC110492152
TU183214 other upstream 199219 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1417604 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 1793076 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2124560 54021608 ~ 54021904 (+) True G158778
TU178397 other upstream 4322282 51816510 ~ 51824182 (+) False G156000
TU184425 other downstream 74080 56245044 ~ 56252598 (+) True G161687
TU184934 other downstream 877350 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1757186 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 2044713 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3774744 59945708 ~ 59953165 (+) True G166131

Expression Profile