RNA id: XM_036951021.1



Basic Information


Item Value
RNA id XM_036951021.1
length 1263
RNA type mRNA
GC content 0.39
exon number 3
gene id c2h12orf73
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56484556 ~ 56486660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTCACATCAACTTGGCTTTTTGTGCCATTAACCCATTATATTTAAATGTAGCTTATCTACACACTGTAGGCACATTACGCGTTTTACCAGAATGGGAAAAGTAGTTTCAGAATTTCACAACTAAAGATTCCATCTCTCGAAAACGGAACGAGATAGGTGGCAGTAGCGCCCAAATATTACCCACAGCGGTAACATAACATtctaaaaaaagaagaagaaggctGTGTTAGCAGTGCTGTTACGTTAAGTGACCTATCGATGTGCTTCAATGATAAATAGATTTCTGTTGGAAAACGACCGTTTTTCAAACTCGCCTTTTGTCTGTTTCAGAATAGAGCAAGGTAACTGATTGGTCCTCTTGGCTGATGTGAAGATGCCTGCTGGTGTGTCATGGCCTCGGTACCTGAGGATGTTTGGTGCCAGTGTACTATCTATGTTTGTCGGAGCAGAAGTTGTCCATCAGTACTACAGACCCGATCTGACTATTCCAGAAATCCCTCCCAAACCTGGTGAATTGAGGACTGAACTGCTGGGATTTAAAGCCAGAGAAGAGGCTGCTGCCGTTGCTGCCCAAAGACAGTGACCCTTTCCGTTGACTGATTACATTTTTGTACAGTATCTAACTCTAGAGCAATCCTTGTACATATTGCACATGTTTAAAAACCACAAAGGGACAAATGTGAATAAGAAATTGGATGGACATATGCGTATCACATTTGTTATGAAACGAATGTGGTATAAATTGACGTGTGCCAATTCTATTCAAAGTTACTCAATGATGTGTTCACATGGCTGGATGGCGCTTCAGGCTCCTCAGACTATAAAAAGAAatggaacctttatttaactaggcaagttagttaataacaagttcttatttacatttAGGTCAGGAGCCTACAATTGCGTTTATCGAACCTATTGTCATGGAGAGCTCATGAGGTCTTGAGTATGGGACAACTTGCAGAGCAGACAACCTTTTGCTGTTCTTGATGCGAGAGCCATAGCAAAGTGAGCTCAAGTTTTAACCATGTCTGATGGATCACTCATGTAACTTCTGTGCAGACTAGTATGAGTAtgtcagatactgtatgtatgtaactGTTCATTGGGTTTTTAATCAACAGATGTGAATCAAATGTTTGTGTTTATGCTTTAAATAGACTTATGTTGGGTCCAcacgcaacaacaaaaaatatagatatatcCAAATCTGAATTTCATTATTTATTAATGAATAAACTTTTAAATTATTCTGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185233 lncRNA downstream 28040 56406492 ~ 56456516 (-) True G162414
TU185270 lncRNA downstream 28492 56455639 ~ 56456064 (-) True G162446
TU185254 lncRNA downstream 45334 56436438 ~ 56439222 (-) False G162435
TU185257 lncRNA downstream 45334 56436438 ~ 56439222 (-) True G162435
TU185255 lncRNA downstream 47507 56436438 ~ 56437049 (-) False G162435
TU185397 lncRNA upstream 170189 56656849 ~ 56657252 (-) True G162560
TU185402 lncRNA upstream 177124 56663784 ~ 56663991 (-) True G162565
TU185484 lncRNA upstream 308635 56795295 ~ 56797167 (-) True G162647
TU185508 lncRNA upstream 329502 56816162 ~ 56816758 (-) True G162662
TU185502 lncRNA upstream 340636 56827296 ~ 56830576 (-) True G162657
XM_021566192.2 mRNA downstream 86 56479441 ~ 56484470 (-) True si:dkey-42p14.3
XM_021566161.2 mRNA downstream 1979 56469565 ~ 56482577 (-) True LOC110492118
XM_036951020.1 mRNA downstream 15363 56454574 ~ 56469193 (-) True LOC110492111
XM_021566141.2 mRNA downstream 15364 56454574 ~ 56469192 (-) False LOC110492111
XR_002468951.2 mRNA downstream 50318 56403133 ~ 56434238 (-) False LOC110492101
XM_021566219.2 mRNA upstream 40994 56527654 ~ 56541534 (-) True LOC110492158
XM_021566231.2 mRNA upstream 61177 56547837 ~ 56559930 (-) False LOC110492166
XM_036951029.1 mRNA upstream 61177 56547837 ~ 56560787 (-) True LOC110492166
XM_021566704.2 mRNA upstream 349150 56835810 ~ 56838821 (-) True LOC110492408
XR_005037355.1 mRNA upstream 481488 56968148 ~ 56971786 (-) True LOC118941078
TU184572 other downstream 182461 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 540991 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 1755696 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 2216203 54257426 ~ 54268353 (-) True ambra1b
TU181692 other downstream 2513217 53969443 ~ 53971339 (-) True cd59
TU185501 other upstream 340636 56827296 ~ 56830576 (-) False G162657
TU185596 other upstream 627907 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 753619 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 757721 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 758175 57244835 ~ 57250107 (-) True LOC100135818

Expression Profile