RNA id: XM_021566210.2


Basic Information

Item Value
RNA id XM_021566210.2
length 2294
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110492152
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56507636 ~ 56518535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGTTATACATGCACTAAAAGTTGACGTATTATTTCAGGAGAAGAACGTTTTTACTTTTTTTCCCTATTAATCATGTTGGTATATTCCCATGTCAAAGTTGACGTGCATCGCTTTCTTTGTTGCATGCTAGAAAGTCCAAAGGGAAATTGATAGAGTACAATCGTTTtcaagaaaaataataataaacacattCAACCATATCTGTAAGAGGATTCAGTCTACTCAACAGCTTCAAGCTCTACAGGGGCAGTAGCCGGGCATCAACCACCATCACAGTCCTCACCCTCACTACACAGAGGGACCAAGACAGAGGGTCATGGCTCATATGGTTGTCAGTCATGAGCCCATGGCACTGCAAGAGCCCGCCAACATAGCGAAAGCTCCAGCAAAAAAGCGAGGGAGAACGGCACAACCAAAGGAACCCAAGCCACCCAAAATGCCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGACCCAAGGCCAAACCGGGAGCCAAGGCCAAACCGGGACCCAAGCCCAAGAAAGGCAAGGAGTGTCAAGAGGCAGACGGCACGCAGGAGAAAATAGACAAGACCTTCAAGAAAGTCAAGAAGAAAAGGGACCGCTTCAAAGGCATGACTGAGGATGAGGTCATGAGTAGAACTCTGACCGACATCCTTGACCACAACCTGGACTATGTTATCATTGGAATCAACCCAGGTCTCGTGGCAGCCTATGTTGGACGATGGTTCCCTGGCCATGGAAACCATTTCTGGAAGTGCCTGTTCTTGTCCGGATTCACTGATGAGCAGCTTAACCACATGAGCGACACCAGCCTGCCAGAGAAATATAAGATCGGCTTCACCAACATGGTGGCAAGGACAACGCCTGGAAGCAAGGACCTGTCAACCAAAGAGCTACGCGAGGGCGCCTTAATTCTTGTTGAGAAGCTGAAAAAGTACAAGCCCCTAATAGCTGTTTTCAATGGAAAATGTATCTATGAAATGTTCTGCAGAGAGATGTTTGGTAAAAAGCCCAAGAAGCTTGACTTTGGTCTGCAGCCACACAAGATACCGGACTGTGAAGTGGCATTGTATCTGATGCCCTCGTCGAGTGCCCGCTGCGCCCAGTTTCCCCGTGCCCAGGACAAAGTGCACTTCTACATCAAGCTGAGGGAATTGAGGGACCAGCTCAGGGGCGTGGCCCGATCTGAGGAGATTCAGGAGTTGGAGTACAGCTTTGACCTGGGACTGGCCAAAGAGGACGCTAAGAGGATGGCGATCAAGGAAGAGGCGTACGACCCAGGCTACGAGGCCGCCCTCGGCGGAGCGTATGGAGAGGGCGGGCCCGGGCCTGAGGAGGGCCAGAGCAACGGTCACTAACTTCTCGTTGGCTGGGAACACAGACGCTGCCGAGAAGGCAAACACTTACCAACCTCCTAcggccgccaccaccaccacagaaggACAACTCCCAGACAGACAGTGGATGAGGCAGTCTTTCACTGATCAGATTAGACATGGGTGGCTCTAAAGAACCACAGGCATGGGTGGGCAACGTATAAGAAAGGGTAAATGGCTCCTAACGAGCCCTATCTATTCGTGCACAGACCTCAAAGCCGCAcatcctttaccctcccttcAACAAGAAGCTGCACCTCTGTTTAAAGACAGAAATAATAGTTTTtagtgttttgtattttttttgccaTTTTGGAATATACACTTGGCTACTTGATAGATGGAATTGTCTAGATTTATAATTTTTAAAGGATTTGTGAAATATGagctttttttaaaaatctggttttgtcatactgtgtgtgtgtttgattgccCACAAGGCAGTCCTTTTTAAATATGTGAAATCAGGGACTTGACACTTTGTTTTAATACCGTACTTTGCCACAGGCAGGTACAGTAGGTGTAAGCAAAGCATGCATACTGTATTGGTTACTGCTCTGACAGTACAAATGGTTCTAAATCAAGCTTTTACACACGTGTCAGAGAGTCCCAAATAAACATGTGAcaaaacacatacagtaagaTGACACTGTAAGTAATGCATTGTGAAGTTTAAGATGAGCTAGTACTCTACTTTTTATATAAGTGCTGTACCTTGAGGAGAATGAACTAGACACAAGGTCAAAAAGTGATTCCACTGAGGGATGATTTAGTAATGTCTTTACAAGCCTTTTATCATGGAGTTGCAAAACTCAAGATGGGtgctatatattttttattttactttcttATGTTTAGTATGTTTCTGAAAATGTTGTTTATAAAATTATGGGGATTTTCTATTTTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184740 lncRNA upstream 3088 56504355 ~ 56504559 (+) True G161956
TU184731 lncRNA upstream 32670 56473760 ~ 56474977 (+) True G161949
TU184656 lncRNA upstream 125338 56380623 ~ 56382309 (+) True G161893
TU184644 lncRNA upstream 145566 56361607 ~ 56362081 (+) True G161886
TU184620 lncRNA upstream 171026 56336419 ~ 56336621 (+) True G161866
TU184748 lncRNA downstream 3199 56521734 ~ 56521968 (+) True G161964
TU184772 lncRNA downstream 29462 56547997 ~ 56597839 (+) True G161987
TU184769 lncRNA downstream 32163 56550698 ~ 56611209 (+) True G161984
TU184819 lncRNA downstream 128827 56647362 ~ 56648579 (+) True G162033
TU184857 lncRNA downstream 150346 56668881 ~ 56670364 (+) True G162058
XM_021566172.2 mRNA upstream 10538 56486697 ~ 56497109 (+) False LOC110492132
XM_021566180.2 mRNA upstream 10538 56486701 ~ 56497109 (+) True LOC110492132
XM_036951018.1 mRNA upstream 278570 56207828 ~ 56229077 (+) False LOC110492043
XM_036951017.1 mRNA upstream 278570 56210763 ~ 56229077 (+) True LOC110492043
XM_021565931.2 mRNA upstream 336683 56146464 ~ 56170964 (+) True LOC110491996
XM_021566244.2 mRNA downstream 50039 56568574 ~ 56620288 (+) True LOC110492171
XM_021566280.2 mRNA downstream 102904 56621439 ~ 56633187 (+) True LOC110492185
XR_005039485.1 mRNA downstream 114191 56632726 ~ 56632853 (+) True LOC118944174
XM_021566268.2 mRNA downstream 114962 56633497 ~ 56637636 (+) False LOC110492175
XM_021566259.2 mRNA downstream 114976 56633511 ~ 56637636 (+) True LOC110492175
TU184425 other upstream 255049 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 560402 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1778787 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2154259 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2485743 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 529779 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1409615 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1697142 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3427173 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3997097 60515632 ~ 60515880 (+) True G166878

Expression Profile