RNA id: XM_021566219.2


Basic Information

Item Value
RNA id XM_021566219.2
length 2348
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110492158
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56527654 ~ 56541534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctctccctcccacaaaCTCTCTCCTGAGAAAACAAAGCTGATCTGAgtatctgtctgtgtgagagtgaaCAACAGTCCAAATGGCTCAGCAAGGAGTTCTCCTGGATCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCAGTCACTACTGCCTGTGGACACAGTTACTGTTGGAGGTGTATTGAGGACTGCTGGGATAAGAATGTTCTGAAAGGGGTCTATAGCTGTCCCCAGTGCAGACAGACCTTCACTCCAAGGCCTACTCTGAGGAAAAATAACATGTTGGCTGAGGTAGTTGAGAAACTGAAGAAGACAGTACTCCAGGCTGCTACCCCTCCTACTCTGTGCTAtgctggacctggagatgtggCGTGTGATTTCTGCACTGGgaccagaaagcagaaagccctcATGTCCTGTCTGGCGTGTTTGgcctcttactgtgagactcacctcCAACCTCACTATGAAGTTCCTGCCTTTAAGAAGCACAAATTGATTAAAGCCACAGCTCGACTACAGGAGAAGATCTGCTCTCATCATGACAAACTGCTGGAGTTTTACTGTCGTACACATCAGCAGTGTATCTGTATGCTGTGTGTGATGGATGTACATAAAGGCCATGATACAGTGTCAGCTGCAGCAGAGAGAACTGAGAAACAGAAGCAACTGGGGATGAGTCAGCAGAAGGTCCAGCAGAGAGtccagaagagagagaaggagttgaAGGAGCTCCAACAGGCTGTGGAGTCTCTCAAGCACTCTGCACAGGCAGCAGTGGATGACACTGAGAAGATCTTTACTCAGCTGATACGCTCCATTGAGAGAAGGTGCTCCGAAGTGAAGGAGCTGATCAGAGCCCAAGAGAAGGTTCAAGCGAGTCAAGCTGAAGGACTTCTGGAGCAACTGAAGCAGGAGATAGCTGAGCTGAGGAAGAGAAACGCTGAGCTGGAccagctctcacacacagaggaccACATCCATTTCCTGCAGagttatcagtctctctccagtctgaGTGTTTCTTCAGACTTACCCAGCATCACTGTCCGTCCTCTTCAGTACTTTGGATATGTGAGTAAGACTGTGtctgagctgagagagaaactaGAATACTTCCTTAAAAGAGAATGGACCAAGATCTCGACTACAGTGGATGTTTTGCCTACAGAGCCCAAGACCAGAGAACAGTTCTTACAATATTCCTGTcagctcacactggacccaaacacagcatGTGAAGAACTCTTTCTGACTGAAGGGAAGAGAAAGGTCACCTTTACAGATCAAGCCCAATCATATCCTAACCATCCAGACAGGTTCACCAACTACTACCAGgttctgtgtagagagggtctgtctggatgctgttactgggaggtggagtggagtgggcACTGGGTACATACAGCAGTCTCATATAAAGACATCAGCAGAACAAGGGCAGGTCATGCATTCGGATCCAATGACAAGTCCTGGAGTTTAGGGTGCTCTACGGGTGGTTATCGTTTCATACACAATAATGTTGTGACTAATGTACCGGGCCCTTGGTCCTCCAGAGTGGGAGTGTACCTGGATCACAAGGCAggtactctgtccttctacagcaTCTCTGACACAATGACCCTCCTCCACAAAGTCCACACCACATTTCCTCAGCCCCTCTATCCTGGGTTTCGTCTCTATGGAGCTAATGATACTGCTGAGCTGTGTAAACTGTGGTAGGGgcccacatagatactagtcatgctggtggtGACAGTCCCCATATGTGATGCTTCATTCGGCTTAGTTTTTTTTCTGCAGTTACTTCATCGGACTGATTAGATCTTCAGAGATGTaattaataaaaatgtaatgtatttATATTCTATCAAATGGAATGTTTTAATCTTGTATATTCACCATGGTGTATGTTTTTGATGTATATTGGTTTGCATTGAGCGCCATTGATACGTTTTCTATTGGTTATCGGTCTCTATGCAATTTTTCTCAGTGGCATGGAATAGGTAGTTTCACTTACTTGCTAACTAAACTATTTGGGatggtttcccggacacagattaagcccagTACTAGACTTAAAAGCATGTTCAATGGAGCTGTCTGGGAAACCCGTTCTAAATTTGGCATATTTTATGCACCCATAATTTTCAGGCGCAACATTAAACCTATCCAGCAGATGGTGCTACTGACCAAACAATAAAAAACTGCAAATATCTTGACTTGCCAGTCAATATATTGTGCTAATATGTTGTAGATGTATCGTCAATCAACTATCCCGAGTTAGGAATAGATTAAGTTAGGCCTTCTATTGTTCAGtgataaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185198 lncRNA downstream 41210 56484556 ~ 56486444 (-) False c2h12orf73
TU185199 lncRNA downstream 41210 56484612 ~ 56486444 (-) True c2h12orf73
TU185233 lncRNA downstream 71138 56406492 ~ 56456516 (-) True G162414
TU185270 lncRNA downstream 71590 56455639 ~ 56456064 (-) True G162446
TU185254 lncRNA downstream 88432 56436438 ~ 56439222 (-) False G162435
TU185397 lncRNA upstream 115315 56656849 ~ 56657252 (-) True G162560
TU185402 lncRNA upstream 122250 56663784 ~ 56663991 (-) True G162565
TU185484 lncRNA upstream 253761 56795295 ~ 56797167 (-) True G162647
TU185508 lncRNA upstream 274628 56816162 ~ 56816758 (-) True G162662
TU185502 lncRNA upstream 285762 56827296 ~ 56830576 (-) True G162657
XM_036951021.1 mRNA downstream 40994 56484556 ~ 56486660 (-) False c2h12orf73
XM_021566192.2 mRNA downstream 43184 56479441 ~ 56484470 (-) True si:dkey-42p14.3
XM_021566161.2 mRNA downstream 45077 56469565 ~ 56482577 (-) True LOC110492118
XM_036951020.1 mRNA downstream 58461 56454574 ~ 56469193 (-) True LOC110492111
XM_021566141.2 mRNA downstream 58462 56454574 ~ 56469192 (-) False LOC110492111
XM_021566231.2 mRNA upstream 6303 56547837 ~ 56559930 (-) False LOC110492166
XM_036951029.1 mRNA upstream 6303 56547837 ~ 56560787 (-) True LOC110492166
XM_021566704.2 mRNA upstream 294276 56835810 ~ 56838821 (-) True LOC110492408
XR_005037355.1 mRNA upstream 426614 56968148 ~ 56971786 (-) True LOC118941078
XR_005037354.1 mRNA upstream 492902 57034436 ~ 57036781 (-) False LOC118941077
TU184572 other downstream 225559 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 584089 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 1798794 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 2259301 54257426 ~ 54268353 (-) True ambra1b
TU181692 other downstream 2556315 53969443 ~ 53971339 (-) True cd59
TU185501 other upstream 285762 56827296 ~ 56830576 (-) False G162657
TU185596 other upstream 573033 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 698745 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 702847 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 703301 57244835 ~ 57250107 (-) True LOC100135818

Expression Profile