RNA id: XM_036951029.1


Basic Information

Item Value
RNA id XM_036951029.1
length 2661
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110492166
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56547837 ~ 56560787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAATTCAGAATGCCTTTTGTAaactaacactcagacatgactTTTTTTTCACACTTTACTAGCTCTGACTAGAAAATGTACTTACTGTGATGTGGTTTTCCCACCTAGCTTTTAAGATACAAACCATGTTGTGGAGTAAAGCCTTCTGCCGCTGCCCTGTGCTCGTCCTGAGCTTGTGGTTCTGTGTGGAAGCAGTGCCCATCGCTGTGGACAAGACTAAAGTGGAAACCCCAGAGCAGAAACTTGAGGCGCCacagagtgtggACACGGGGCTTCACTATGACCGCTACCTCAGGGAAGTCATTGATTTCCTGGAGAAGGACCAGCATTTCAGAGAGAAgctccacaacacagacatggAGGACATTAAGCAAGGCAAACTGGCCAAAGAGCTGGACTTTGTCGGCCATCACGTGAGGACCAAACTTGACGAGTTGAAGAGGCAGGAGGTGAACAGGCTACGGACACTCATCAAAGCTAAACAAGACGTTGAGGGAGGGCATGAAATGAACCACAAGGCGCTGCTCATGCAGTTTGAGTACATGAACCACATGAACCCACACACCTTCGAAGTGGAGGACCTGGATAAGCTTATTAAATCGGCTACCAGTGACCTGGAAAACTATGACAAGGATCGTCACGAGGAGTTTAAGAGGTACGAGATGATGAAGGAGCACAAGAGGAAGGAGCACCTGAAGAACCTCGACGAGGAGCAACGCAAGGACGAGGAACAGCACTACGAAGAGCTGAGGAAGAAACACGCAAACCATCCCAAAATCAACCACCCTggaggtcAGGACCAGCTGAAAGAGGTCTGGAAGGAGTCTGACGGTTTGGACCCAAATGACTTTGACCCCAAGACCTTCTTCAAACTCCACGACAACAACGGAGATGGCTACATTGATCAACAGGAGCTTGAAGCCCTGTTCactaaagagcTGGAGAAGATGTACAGCCCTAATCTTGAAGAGGATGACatgacagagatggaggaggagcgaCTGCGCATGAGGGAACACGTCATGAATGAGGTGGACACCAACAAGGATAGACTGGTCTCCCTGGATGAGTTCCTGATTTCCACAAACAAGAAAGAGTTCCAAGAGCCAGACAGCTGGGAGacTCTGGAGCAGGCCCCAGCCTACACGGACGAGGAGATGCAGTTGTTTGAGGAGCAGCTGGCCCAGGAGGAGAGCAACCTCAAGCAGAAGAACGTAGAGCTGCAGAAACAGAAAGAGGAGCTGGAAAGGCAGCAGGAGCAACTTGACGCCCAGAAAGCCGAGCTGCAGCAGGCGGTGGAACAAATGCAGATAATAAAATTTGAAAAAGCAAATGCGGCCGTTGAGGTCAAAGATGGAGGAGCTACAGTAGCAGTGCCCCCTGGAGGTCAATCATTGCCAGTACTACCAGGAGACAGCCAACCTCTACCCCCGAGTCACCACCAAGACTTACCTGCACACTCTTAGCGGGCCCGGCagctttttctgtgtgtgtgaatctcttgatgtgtgtgtgtgtgtgggcgctcatgtgtttttgtgtgcatatgtgtgtaaaTTAATCTTGCAACGAATCCGTTTTAGTTAGTTTTAATGTGTTGTCGGCGCTCTACGCTCCCACATTATACCCGGACGCACACATACAGTCCAACAATTTCCAGAGACCAGCTAAACCAATCAGAATGAAGCCTTGGATTTTGACCCACTTCCAGTCGTCGCATTCCGGAGCTGGCAGGAACAGCCAGCACAACCAACGAGACTTGAAATAATTGCTGAACCAGGCATTTTGTAGACAATCCACTCTTTTGTTATTAGTTATTTTCCCTCTTGCCACAACCAGCACATGGTTCGATATGGGAAGTCATTTGGTTGAGAAGAGGGTTTTGTTCCTGAATACGTGCAATGTTTTGTTTTCTACCTAGTTAGGTATGCTACCCCGTGGGATTATTTCTGTGGGGAAAGATTTgtttaaaatacaaaatacattttggttaAATAGTTTACGGAGGTGGGTCAAATGAATGTCAATTTTGATATGCTGCTTGATAGTATGCTGTCATGATAAATAATGTAGAACCTTACCTGGAGATGGTTTACTGTGAGAACCTTGCTGATTCATTCCTGATATTAATAATTGCCCATACAGATACATTAAGCTAGAGATACATTACTGTAGTACAGAGATGCATTACACAGATACATACAGAAACATTACTGTAGTACAGAGATGCATTACAGATACATACAGAAACATTACTGTAGTACAGAGATGCATTACAGATACATACAGATACATTACTGTagtacagagatacattacacagaTACATACAGATACATTACTGTAGTACACAGATACATTAAGAAGGTACTGTAGTAATTTAATATTGGCCGAAAGAATGTTTACATGCCACAAACTGCTAATTGTTTTTGTGTAACAAAAATGCCCCATTTGATGTCGACTTAGAATGTTGTAAATTGTTTCATTGTGGTTGATAGGGACAATAGTGATAATAAGGAGTCTTAAATGACACATTCATCTTCATTTCCAGtgtctgtatttctgtgtgtgacCTTGTCTTTATTTGTGAGAGTATATATTATGATCACAGTTTAGGACCAAAGTCTATTGTGGGGAtataataaaaataacaatata

Function

GO: NA

KEGG:

id description
K20371 NUCB; nucleobindin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185198 lncRNA downstream 61393 56484556 ~ 56486444 (-) False c2h12orf73
TU185199 lncRNA downstream 61393 56484612 ~ 56486444 (-) True c2h12orf73
TU185270 lncRNA downstream 91773 56455639 ~ 56456064 (-) True G162446
TU185257 lncRNA downstream 108615 56436438 ~ 56439222 (-) True G162435
TU185255 lncRNA downstream 110788 56436438 ~ 56437049 (-) False G162435
TU185397 lncRNA upstream 96062 56656849 ~ 56657252 (-) True G162560
TU185402 lncRNA upstream 102997 56663784 ~ 56663991 (-) True G162565
TU185484 lncRNA upstream 234508 56795295 ~ 56797167 (-) True G162647
TU185508 lncRNA upstream 255375 56816162 ~ 56816758 (-) True G162662
TU185502 lncRNA upstream 266509 56827296 ~ 56830576 (-) True G162657
XM_021566219.2 mRNA downstream 6303 56527654 ~ 56541534 (-) True LOC110492158
XM_036951021.1 mRNA downstream 61177 56484556 ~ 56486660 (-) False c2h12orf73
XM_021566192.2 mRNA downstream 63367 56479441 ~ 56484470 (-) True si:dkey-42p14.3
XM_021566161.2 mRNA downstream 65260 56469565 ~ 56482577 (-) True LOC110492118
XM_036951020.1 mRNA downstream 78644 56454574 ~ 56469193 (-) True LOC110492111
XM_021566704.2 mRNA upstream 275023 56835810 ~ 56838821 (-) True LOC110492408
XR_005037355.1 mRNA upstream 407361 56968148 ~ 56971786 (-) True LOC118941078
XR_005037354.1 mRNA upstream 473649 57034436 ~ 57036781 (-) False LOC118941077
XM_021566563.2 mRNA upstream 487524 57048311 ~ 57088772 (-) False zgc:113516
XM_021566546.2 mRNA upstream 487524 57048311 ~ 57089862 (-) False zgc:113516
TU184572 other downstream 245742 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 604272 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 1818977 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 2279484 54257426 ~ 54268353 (-) True ambra1b
TU181692 other downstream 2576498 53969443 ~ 53971339 (-) True cd59
TU185501 other upstream 266509 56827296 ~ 56830576 (-) False G162657
TU185596 other upstream 553780 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 679492 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 683594 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 684048 57244835 ~ 57250107 (-) True LOC100135818

Expression Profile