RNA id: XM_036951105.1


Basic Information

Item Value
RNA id XM_036951105.1
length 4653
RNA type mRNA
GC content 0.57
exon number 28
gene id LOC110492194
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56679708 ~ 56835186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACAAAAGTAGGCTACTCAGAAAACGTACTTCTTCTCCGTCAACTGAGTAGTCTAGCTGACAGCCCTCCCCTTTATTCGCCTCTTCGCCCTGGCGGTGATCATTGGATTTTGAGTGCCCTGGAGAACTCCACGAAGAGGGAATGAAATAGGACTTCATACCAGGATCATGGCGGCGCCGCTCGGGCGGGAGACCTTACCTGAGCACTGGTCCTACGGTGTCTGCGGAGATGGCAGGGTGTTTTTCGTTCACGATGAAACGAACACGACTGCTTGGCTCCATCCGAAAACGGGCGAACCTGTCAATTCCGGACACATGATACGGTCAGATTTACCTCAAGGATGGGAAGAGGGTTTCACGGACGAAGGGGCCAGCTACTTCATAAACCATAACCAGAGGACCACGACGTTCCGGCACCCCGTGACGGGACAGGTGTCTCAGGAGAACGTTGGTTTTATCCTCCAAGAAATGCCCGGCGGCCGCATGTCAAACCCCCAGCAAGCCGACTTGAGGCCCTCCAGCACCATCAGCGAGGCTTCCACCGCCGTCACCAACTCCACCGTGGACACCACCTCGGGGTCAAAGgGTTCCAGGTCCAGTGGGAGGGTGCACAGTTTTGGGAAGCGAGAGCAGTCCATCAAGAGGAACCCCAATGTCCCCGTGGTGGTGAGAGGATGGCTCTACAAACAGGACGGCTCTGGAATGAGGCTTTGGAAGAGGAAGTGGTTTGTGCTGGCTgactactgtctgttctactATAAAGACAGCAGGGAGGAGTCAGTCCTGGGTAGTATTCCTCTGCCCAGCTATGTCGTCTCAGCCGTGGAGCCTGAGGACCACATCAGCCGCAAGTACGCCTTCAAGgCCAACCACACGGGCATGCGCTCGTACATTTACAACCGGAGCACTGTGATTGACTCGCAGGCGGAGCACGGCGGCATGCGGACGTACTTCTTCAGCGCCGACACGCAGGAGGACGTGAACGGCTGGGTGAAGGCCATGAACCAGGCGGCGCTGATGCAGAACCAAACCGACAGCCTCAAGAGGCCATCGGAAACATCGGAGAAATCGGAAATGCCCAACACGTCGGAACGCAAGGGGGTCCCCCAAACCAACCACGTCAACAACTACACAAAGACCTCACGCGAACCCCGAGCTGACCCCCATCTCCATAGCGATGGAGTGGTCCTCGAACCTGCCGATATCCGAGAAACCGAGGAGCGCCGTAGCTTCCGGAACGACACACTCAATCCCATCACTTCCAAGATTCCTTCCCTCGGCGGCGGAAGCGTGGAAATTGAAATGGACGCCGTCCCTCCTAACagtctccctccccttccctccctaacTCCTGACTCCGCCTCTGCACCCACATCCGCGCCCCCCTCCAGGGCGCCATCGCGCGCCCCGTCGCGCGGCGCCTTCACCCTGCCCCCCGGGGCCTGTCTGAGGAACGGGACACCCACTCCGGAACCCAACGGGATGGGGACGGGGACGTACCAGAGGGCCACGCTGACGCCCCAGGTGGTTGACACTCAAAGGCAGGTGCAGAGGAGGAGCGCCCTGGAGCAGGTGGAGCACTGGGTCAAGGTGCAGAAGGCCGAGCACAAAGGCCCCCCCTCAAGAGGGGGCACCCTCCCCCGTCACAGCCCCCCGACCGCCGCGCGCCAAGGGGAGTACAAATACGCACAGGACCGCCTCAGCCACTTCCGACTCGGACCCTCAGACCCCCAGGGTACCGGCGCCAGGGACGGGGGTGGCATCGGTGGGCCTGGCACCGTGTGGCAGCTCTACGAGTGGCAGCAGCGCCACCAGTTCCGCCACGGCAGTCCCACTGCCCCCCTCTACACACCTGCCCCGGACTACCCCTTCGGGCCCAGGCCCCCCTCCACGGTGCCCCCCTCGGCCCCGCGACCCAGTTCTGAGGTTCCCCGCTGTGTGTCGGTGCCCCCAGACCCCTCCGATATCCTCCCACCGGGCCCCCAGAGCTCCAGGGCCCTTTCCCCGCCACGGAGGCCCCACACACCCGCTAACCGGGTGGTGGTAATGCCCCAGGGGGGGAGAGATGCACTGGACATGCCGGTGGCTGGGTCCCCACGAAGAGCCAAGTCTCAACTACTCAAGGCTGCCACCATCGAGAGACGGTCCATGCCTCCCTCCAACTACATCACACACACGGTCAGCGCGCCCAGCCTTCACGGGAAAACGCCTGAGGAGCTCACCCTCCTGCTCATTCAGCTCCGGAGGCATCAGGCAAAGATGGCCGCCGCTCGCCACCACACGCTAACCCAGCTGCAGCACTTCAACTACAGCCCTTCTGGCCCCCACTTCCTCACCACCAAAACcaaccctctcttctcctccggCCCTTCTTATCTGGGGCCCTTCCTAGGCCCCATGGGCCACGGCAGCAGCAGCCAGGTGGGGGCCCCCAGTGCGCCTGGTCGTCTTTACCCCACCAATGTTGACGATACGTACATGCAACTGAAGAAAGACCTGGAGTATCTAGACTTGAAGATCAAAAGTTTAGAGCCGTTCATCCTCACGGCTCACAGTGTGCTACTGCACTGCACCGCCGGGCCACTATGGAACGTGGTTGGAAGTCAGACGTTGAAAGAAGCAACGAGACCCGTCAGAGTAGCCGAGAGTGACGTGGATGTGAAACTCAGTCGGTTATGTGAGCAGGACAAGACCCTGAAGGAACTGGAGGTCCGGATCTGCTCACTAAAGGAGGATAAGGACAAGCTGGAGTCGGTGCTGGACGTGTCCCACCAACAGATGGAGCTGTACAGAGACCAGGCGGCCCACCTGGAGAAGATAGCCTACCAGCAGAGACTCCTACAGGAGGACGTGGTGCACATCAGGGCCGAGATCTCCAGCGCGTCCACGGAGATGGCCCGGGCCTGGGAGGACTACAGCAGGCTGGAGAGCTCTGTGGAGCAGTTGAGGGCCGTGCTAGAGGCACACATGAACCACAGCGCCACCCCTCAGcaggagaAAACAGAGATAAAGCGGGAGCTGTGGAGGATAGAGGACGTGATGGCAGGACTGAGCTCCAGCAAAGCCAACTACAAGATCACAATCGACTCAGTGCAGAACCCAGAGAGGAAACTAGTGGCTTCAGTGCCGGACCCTGCAGTGCCTTCGCAGAGCGCGACGCCCCCCGTAGGGGAGGTTAGGCCCCCTCCTCGCAGCTCCTACACGCTGCCTCACAACCCCGTGCCAAAATGGGCAGAAGATGAGGCTCCTCCCAGACcacccctgccctgcctctacgATTATGAAGACCCGCCCCCTGCCATCCCACCCCTCCCCAAAGAGGCGTCGGTGGTAGTACGACACACGTCGGTTCGCGGGCTCAAACGCCAGTCGGACGAGAGGAAGAGGGACCGAGAGAGCGGAGTGTGTGTCAACGGAGACTTTAAAGTGGAGCTGCGGTCATACCTGAGTGAACCAGAACTGCCAGGGGCGGGCCAGAGCAGCACAGGGTCTGAGGGGGGCTACCAGACCCTCCCAAACAAAGGTCTGTCGGGCTCATCGCCAAGGCTGAACCAGTCCAGTAACATCTCCTCCTACGTGACCCTGAGGAGGGGGGCAGCCGCCTCTGCAGAGAGGTGGAGGCGAGAGCAGCAGGACTTTGATTTGCAGCTGGTGCAGAAAGCTCAGGTGGAAGAGCGACAGGTTGCCGAGGGCCAGAGCGACGAGGGGCGTAGCGAGctgaaggaaagggagaggatcCAATCAGATGAGTGGCTCTCGGTGATGGCCATGCCCACGATTGCCACACCCATGAGGGAGACGGACATGGAGCCCCTCGACTATGACCTGGATCTCAGTCGTGAGCTTTCCAAGCCCCAAAAGGTGTCTATCCCAGAGCGCTATGTGGAGTCGGACCCCGAGGAGCCTCTGAgtcaggaggagatggaggatcGTCAACGCAGAGCAGAACGCATCAAAAACATCCTGGCCAAATCCAATTTTCAGAACATACACCCGTCGTCTGGCGCGTCTGTCCCACTGAACTTCACTGATTTGGACATCGCCatgcagcagcaggagaggatcATGACTGTGTCCCATGCCTTGGCCTCTGAAGCCTCCGTTAAGAGCAAGCAGTTCACAGCCAAAGCTCAGCTGAGCTCTGACTGACCGTTGACTCAGACACCAAGGCACCAACAGGACCTCTGTGTGGATGAAAATTGTTTGTGGAGTTCACTGACAAAAGTGAAGTGATTTTGTATTAGGCTTATTAGAGCTAAAACGAGATGTTTTGAAGAACCAAACAGTTATTTGAAACTACACTGCGTGTACCTAATGTTAAGGTTGAATTGGAGTTGTTTTTACATGCTTTTGCACTTTTATGGCGTGTTGTGTGGAATTATTAACACCTACTAGTTTTTGCAATAGAGAGTAATTAGCTGTTTTTTTTGCAGTGTGGTCTATTTTCAACAGAAATTTAAGTTCAAAGCAATGTTTTCTAAGGTCGCAGATaaggaaatgtatttattttgagtAATGAAAGAATCTTGCACCAAATATAACTTTGTAGCTCAGCAATGCCACCTAATGCTTTGGCCAATCAACTGTATTGTATGATTTAAAAAGGAAAGAAACCATACTGGTGTTTTATTGAAATAAAGGTTTTAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184857 lncRNA upstream 9346 56668881 ~ 56670364 (+) True G162058
TU184858 lncRNA upstream 9873 56669539 ~ 56669837 (+) True G162059
TU184819 lncRNA upstream 31131 56647362 ~ 56648579 (+) True G162033
TU184769 lncRNA upstream 68501 56550698 ~ 56611209 (+) True G161984
TU184772 lncRNA upstream 81871 56547997 ~ 56597839 (+) True G161987
TU185034 lncRNA downstream 179834 57015020 ~ 57015234 (+) True G162230
TU185035 lncRNA downstream 180875 57016061 ~ 57016311 (+) True G162231
TU185043 lncRNA downstream 189069 57024255 ~ 57024524 (+) True G162239
TU184932 lncRNA downstream 192102 57027288 ~ 57027775 (+) True LOC110492317
TU185044 lncRNA downstream 194900 57030086 ~ 57032664 (+) True G162240
LOC110492444 mRNA upstream 24845 56649543 ~ 56654865 (+) True LOC110492444
XM_021566268.2 mRNA upstream 42074 56633497 ~ 56637636 (+) False LOC110492175
XM_021566259.2 mRNA upstream 42074 56633511 ~ 56637636 (+) True LOC110492175
XM_021566280.2 mRNA upstream 46523 56621439 ~ 56633187 (+) True LOC110492185
XM_036951228.1 mRNA downstream 33895 56869081 ~ 57024923 (+) False LOC110492317
XM_036951218.1 mRNA downstream 34842 56870028 ~ 57027778 (+) False LOC110492317
XM_036951247.1 mRNA downstream 34842 56870028 ~ 57027778 (+) False LOC110492317
XM_036951237.1 mRNA downstream 35212 56870398 ~ 57024923 (+) False LOC110492317
XM_021566614.2 mRNA downstream 454306 57289492 ~ 57302882 (+) True LOC110492362
TU184425 other upstream 427112 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 732465 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 1950850 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2326322 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2657806 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 213128 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 1092964 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1380491 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 3110522 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3680446 60515632 ~ 60515880 (+) True G166878

Expression Profile