RNA id: XM_036951228.1


Basic Information

Item Value
RNA id XM_036951228.1
length 2630
RNA type mRNA
GC content 0.57
exon number 16
gene id LOC110492317
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56869081 ~ 57027778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTAGGGAGAATGAGTACTCTCCGTGCACGACAACAGTGAACACTCACTCACTTCGCCTCACTTTCAAATGGTTGCACGATGGGAAATGCTTAAAATAGTTAAGGGTAGCCAAGATTGACTAGTTTAACAAAGTTACCAAAGAGCCTCTCAAGCGAACCTCACTTCGCGCACCAGAGTGTTAAAGTGGCCCATGGCCACACAAGTTGCCTGTATTGCTTTCTCCACTGATACAGACAACATTGTCCTTTGATAATACAACGTGATGCCCACAGACTGGATACACCAAGCCAAGGTGACGTTCATGAATCCAAAAACTGACCCATAAGTGAGCTGAGGGTGTTGGGGTTGAAGTCTCTCTACTGCGAATGATGTCGTCCAAGCGAGCCACACCTCCGTTTCCCCCGGcgacagaggaagaggaagcgATAGGTCAGGACAGTGTGGGCTGGGCCAATGAGGACAGAGAAAGCCATGACCAGCCAGTTACGCCCCCTCTGCACGGCAAACCCCTCCCAGAGGAGCACCAGCCAATCAGAGACAGCCAGCCTGAGTCGGACTGGGAGAGTATAGGCCCTACTCagacaGACAATGCTAGTAGCAAGGGCTGTTCCTTGAACTCCTACCGGAATAACTCTATATCTCCACCAAAGCCTGAGGAGTGTTCCCAGGATTGCGGCGAGCTGCTAGGCGGATCCGCCTTCAGAACACCGGAACGCCGCAAAGGAAGCCTGGCTGACGTGGTGGACACCCTGAAACAGAAGAAACTAGTAGAGCTGACAAAGACAGAACAGGATGAGTCTACCTGTGCGGAGACACTTCTGTCCAGGGACTGGAAAGACAGGAGGGACAGACTGAATGCCAGCGAGCTCCTAGGAGAGGTCAAAGGTACCCCAGAGAGTTTGGAGGAGAAGGAGCGTCAGCTTTCGACcatgattggccagctcatcagCCTGCGGGAGCAGCTCCTGGCGGCCCACGACGAGCAGAAGAAGATGGCCGTCTCACAGATGGAGAAGCAGAGGCAGCAAATGGAGCTGGCCCGTCAGCAGCAGGACcagATTACGACTCAGCAGCAGCAGCTCCTGCAGCAGCAGCATAAGATCAACGTTCTCCAGCAGCAGATACAGgTGCAGGGTCACATGCCTCCTCTGATGATCCCAGTGTTTCCTCACGACCAGCGATCTATGGCGGCTGCTGCCGCACAGCAGGGCTTCCTCTTCCCACCGAACATGTCCTACaagccagGTGATAACTACCCCATGCAGTTCATTCCAACCACAATGGCAGCTGCAGCCGCTTCAGGACTGAGCCCGCTCCATCAGCAGCTGTACGCTGCCCAGCTGGCCAGCATGCAGATCTCGCCCGGAGCCAAAATGGCCTCCCTGCCGCAGCCTCAAAACTCCTCAGGCCCCCTCTCGCCCTCTGCCTTGAAGAGTAAGAAGAGAGCATCGAGTCCTGTCACTCACATTAAGGAGGAAGGATCGACACAGCCCCTGAATCTCTCAGCCCGACCCAAGACTGGCGAGCCCCACCACTCCCCATCCTCGCCGTCACACAGCCTGTACCCTGGCAACAAGAGCAGGCCCATCAGCATGGGGAAGAGGCGCATCCCCAGCCCCCTCTCCAACATGGGCAGGGGCTCACTGGACATCCTGTCTAGCCTGAACCCCACGCCACTGTTTGGGGACCAGGATGCGGTGATGAGCGCCATCCAGGAGGCGAGGAAGATGAGGGAGCAGATCCAGAGAGAACAGCTTCATCACCAGCAGCAAAGCCTGGAGGCCAAGCTCACAGCCCTGAGCGGCATGAGTTTCAGCAATGGCAGCAAGGAGCGGATGCACTTTGAGAGTTTGAGTCAGCACCTGGGCAACCTGGGAGAGGATGATGGAAAGACGGGCCACAGGGTCATTGACCTCACCAGACATGAGGATGTTGATGGTGTCTCCTGCACTACAGAGGCCCGGGTCTTCAGGGAGACCAGGGGAAGGAACAGTACTGAGCCCCACATTAAGAGACCCATGAATGCCTTCATGGTGTGGGCCAAGGACGAGAGGAGGAAGATCCTGCAGACCTTCCCCGACATGCACAATTCCAACATCAGCAAGATCCTGGGCTCTCGCTGGAAGTCCATGACCAACCAGGAGAAGCAGCCATACTACGAGGAACAGGCCCATCTCAGTAAGATCCACCTGGAGAAGTACCCCAACTACAAGTACAAGCCCCGGCCCAAGAGGACCTGCATCATCGACGGCAAGAAGCTACGCATCGGGGAGTACAAGCAGATGATGCGCTCGCGGCGACAGGAGATGAGGCAGTTCTTCAGTGTGGGGCCACAGCCTCAGATCCCCATCAGCAACAGTGCCGGCGGCCTCTACCCGGCTGCCATAGCGACAGCCACGCCCTCACCGCACCTGACGTCGGACTGCTCCAGCGCCTCGGCCAGCCCCGAGCCCGCCATCCCCGCCACCCAGAGCACGTTCGGCGTGGTCAAGCCCAAGCCGGTCGCCATGGTGACCGGCGATCACCCGGTCATCGGAGAGGACGAGATAGACATGTATGAAGACTTTGAGGACAAATCGGACTACAGCAGTGGCCATGAGACACGGGAGCCTGTCGGCGCCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184857 lncRNA upstream 198717 56668881 ~ 56670364 (+) True G162058
TU184858 lncRNA upstream 199244 56669539 ~ 56669837 (+) True G162059
TU184819 lncRNA upstream 220502 56647362 ~ 56648579 (+) True G162033
TU184769 lncRNA upstream 257872 56550698 ~ 56611209 (+) True G161984
TU184772 lncRNA upstream 271242 56547997 ~ 56597839 (+) True G161987
TU184932 lncRNA downstream 2365 57027288 ~ 57027775 (+) True LOC110492317
TU185044 lncRNA downstream 5163 57030086 ~ 57032664 (+) True G162240
TU185045 lncRNA downstream 8233 57033156 ~ 57033721 (+) True G162241
TU185046 lncRNA downstream 9084 57034007 ~ 57034367 (+) True G162242
TU185047 lncRNA downstream 9711 57034634 ~ 57035657 (+) True G162243
XM_036951074.1 mRNA upstream 33895 56679708 ~ 56835186 (+) False LOC110492194
XM_036951093.1 mRNA upstream 33895 56679708 ~ 56835186 (+) False LOC110492194
XM_021566298.2 mRNA upstream 33895 56679709 ~ 56835186 (+) False LOC110492194
XM_021566306.2 mRNA upstream 33895 56679709 ~ 56835186 (+) False LOC110492194
XM_036951105.1 mRNA upstream 33895 56679710 ~ 56835186 (+) False LOC110492194
XM_021566614.2 mRNA downstream 264569 57289492 ~ 57302882 (+) True LOC110492362
XM_021566755.2 mRNA downstream 301405 57326328 ~ 57329184 (+) True rpl27a
XR_005039481.1 mRNA downstream 302466 57327389 ~ 57327520 (+) True LOC118944169
XR_005039480.1 mRNA downstream 303397 57328320 ~ 57328450 (+) True LOC118944168
XM_021566728.2 mRNA downstream 305473 57330396 ~ 57331987 (+) False akip1
TU184425 other upstream 616483 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 921836 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2140221 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2515693 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2847177 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 23391 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 903227 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1190754 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2920785 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3490709 60515632 ~ 60515880 (+) True G166878

Expression Profile