RNA id: XM_036951247.1


Basic Information

Item Value
RNA id XM_036951247.1
length 5425
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110492317
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56869081 ~ 57027778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTGTAAATGCCGAGCCTTTCGGAGTTTGTTCACTGTGCGCTCGGTTGACTTCGGCGCCATGTCCAAATCAGAATGAATTTGATTCAGTTGTAATCAACTGGAAAATGGGAATATTGTCGACGCTGCCGAGTAGGGGATGTCTCTCTCACAAGTTTACTCTCTCTCGGGTCATGGAAACTGACCTTAAAAGAATGCGTGGTGAGTCATAAATTAAAATAGACGTAACCATTCGTTCTAAAACGGTTCCATTGGGAGACAATACAGAAGAAACAAGACGTTGGTCCCAGCGAGAACACGGTGCGAAGCAAGGGGAACTTCTTGAAGTGACGTTCATGAATCCAAAAACTGACCCATAAGTGAGCTGAGGGTGTTGGGGTTGAAGTCTCTCTACTGCGAATGATGTCGTCCAAGCGAGCCACACCTCCGTTTCCCCCGGcgacagaggaagaggaagcgATAGGTCAGGACAGTGTGGGCTGGGCCAATGAGGACAGAGAAAGCCATGACCAGCCAGTTACGCCCCCTCTGCACGGCAAACCCCTCCCAGAGGAGCACCAGCCAATCAGAGACAGCCAGCCTGAGTCGGACTGGGAGAGTATAGGCCCTACTCagacaGACAATGCTAGTAGCAAGGGCTGTTCCTTGAACTCCTACCGGAATAACTCTATATCTCCACCAAAGCCTGAGGAGTGTTCCCAGGATTGCGGCGAGCTGCTAGGCGGATCCGCCTTCAGAACACCGGAACGCCGCAAAGGAAGCCTGGCTGACGTGGTGGACACCCTGAAACAGAAGAAACTAGTAGAGCTGACAAAGACAGAACAGGATGGTACCCCAGAGAGTTTGGAGGAGAAGGAGCGTCAGCTTTCGACcatgattggccagctcatcagCCTGCGGGAGCAGCTCCTGGCGGCCCACGACGAGCAGAAGAAGATGGCCGTCTCACAGATGGAGAAGCAGAGGCAGCAAATGGAGCTGGCCCGTCAGCAGCAGGACcagATTACGACTCAGCAGCAGCAGCTCCTGCAGCAGCAGCATAAGATCAACGTTCTCCAGCAGCAGATACAGgTGCAGGGTCACATGCCTCCTCTGATGATCCCAGTGTTTCCTCACGACCAGCGATCTATGGCGGCTGCTGCCGCACAGCAGGGCTTCCTCTTCCCACCGAACATGTCCTACaagccagGTGATAACTACCCCATGCAGTTCATTCCAACCACAATGGCAGCTGCAGCCGCTTCAGGACTGAGCCCGCTCCATCAGCAGCTGTACGCTGCCCAGCTGGCCAGCATGCAGATCTCGCCCGGAGCCAAAATGGCCTCCCTGCCGCAGCCTCAAAACTCCTCAGGCCCCCTCTCGCCCTCTGCCTTGAAGAGTAAGAAGAGAGCATCGAGTCCTGTCACTCACATTAAGGAGGAAGGATCGACACAGCCCCTGAATCTCTCAGCCCGACCCAAGACTGGCGAGCCCCACCACTCCCCATCCTCGCCGTCACACAGCCTGTACCCTGGCAACAAGAGCAGGCCCATCAGCATGGGGAAGAGGCGCATCCCCAGCCCCCTCTCCAACATGGGCAGGGGCTCACTGGACATCCTGTCTAGCCTGAACCCCACGCCACTGTTTGGGGACCAGGATGCGGTGATGAGCGCCATCCAGGAGGCGAGGAAGATGAGGGAGCAGATCCAGAGAGAACAGCTTCATCACCAGCAGCAAAGCCTGGAGGCCAAGCTCACAGCCCTGAGCGGCATGAGTTTCAGCAATGGCAGCAAGGAGCGGATGCACTTTGAGAGTTTGAGTCAGCACCTGGGCAACCTGGGAGAGGATGATGGAAAGACGGGCCACAGGGTCATTGACCTCACCAGACATGAGGATGTTGATGGTGTCTCCTGCACTACAGAGGCCCGGGTCTTCAGGGAGACCAGGGGAAGGAACAGTACTGAGCCCCACATTAAGAGACCCATGAATGCCTTCATGGTGTGGGCCAAGGACGAGAGGAGGAAGATCCTGCAGACCTTCCCCGACATGCACAATTCCAACATCAGCAAGATCCTGGGCTCTCGCTGGAAGTCCATGACCAACCAGGAGAAGCAGCCATACTACGAGGAACAGGCCCATCTCAGTAAGATCCACCTGGAGAAGTACCCCAACTACAAGTACAAGCCCCGGCCCAAGAGGACCTGCATCATCGACGGCAAGAAGCTACGCATCGGGGAGTACAAGCAGATGATGCGCTCGCGGCGACAGGAGATGAGGCAGTTCTTCAGTGTGGGGCCACAGCCTCAGATCCCCATCAGCAACAGTGCCGGCGGCCTCTACCCGGCTGCCATAGCGACAGCCACGCCCTCACCGCACCTGACGTCGGACTGCTCCAGCGCCTCGGCCAGCCCCGAGCCCGCCATCCCCGCCACCCAGAGCACGTTCGGCGTGGTCAAGCCCAAGCCGGTCGCCATGGTGACCGGCGATCACCCGGTCATCGGAGAGGACGAGATAGACATGTATGAAGACTTTGAGGACAAATCGGACTACAGCAGTGGCCATGAGACACGGGAGCCTGTCGGCGCCAACTGAGCATGCTCAGAAGAACCTCTGATTTTTTTGAACTTTTTTGAACTAAAAAGCGGGACAATATGACAGAGACAGTGTTATGAGCAGAACAACTTTTCAACAGTACGACGGGAGCTGAGCATGTGCTCGAAGCAGCTCCGTCCGGGATACGATGCACCACAGACTGAGCATGCTCAGATTGACTCTCGACAGGAAGTGACATCAGATCTCACAGAGCATGTTGCTCAAAAAAAATACCTTGACGGGAGTGCTTCTTTTTAGCATGCGCAAACGTCTCGGAAACGATCCCGTACAGAGGGATTGGGCAAAGACAACCTCCAGACAACCTCCAGACAATCTACCAGAAAGACAGTGAACATACTCACACGGCAATTACAATGCAACACGGACAAGAGCAAGTAAGAGTCAGTAAGATGTCGATGAGAAGAGAATGAGATTAAAGAACAAAGAGAGAGCCTACACATTTCCCGcgtgtgtatttttttttataggaGCGTGCATGGATTTGACTAAAACATCAGGAATTGGTCTTCGACAGCGGTCAGtcttaaatgtttattttaagtgtgatgacgtttttttttttgcgtttttaaatttgatttccatggaCATGTTCCTTGATAGGTTACTTTCCTGTAAAACCTTGGATTGTCAGGACTTGAAAATGTGAAAGGTAATGTAAAATCCTTAGCTCTTGTAGTTTGACATGATTATTTCTCATGAGTACAGTACCCCTACACCTTTCTCGACAAATGCTTACAATATGTTACATTACTGTTTATGATGGGGTTTTATATCCTTGCTCAGGTATGCTGTGCCAGCTTGTGAATGTGTTTTTGATTTCATATGAGAGAATGGTAGGACTTTTCAGACTGACAACGAAACAGGGGAGGAAAAAAAATcccttttattattattaatattattataatgttttttttaatttttagatATTGTACAGTTTTTCTTGAAATGTGCCAAACCTACATTCACATCCCTCTAAAATATTCTAGTCTTAATTTTGATGCTGCAAAATGTCTTATACAATCATTAGTATCTCCCCGACCCCCGGACCATGGGTAGGCCCAGCGCTCTAGGACACCTTGTGGTGCGCTACAGGGTCATGTTGATTAGGTACCAAATGAAAGACAAACCGACATTTCAAGCGTTTTCCCCTTGCATAACCCAGTAAACAACCCAGCACTCATCGCCAAACGCAATGCCTCAGGATTCCTCCGGATACTGATATCTGTCATCTCTGGCACCACCTCTGGCAGTGACACAGACCAGTAGAGGGATTCATCGTAGAGAGTATCAATCTGGGGATGTTTAGCCCCAAgtaccttcccctctctcttttcttagCCCACATCTTCTACGGGATGTTAAAAGGGGTCGTTCATGATTTTACAACAAAGGTTTGTATTGGCTGTTTATAGAAAACCTTAACCATGTTTAACATGTTTATTCTGGCCCATAGACTATATTCAaggtgaggaaccatctaacatcaagttgtaaaatcCTGATCGTCCACTTTAATTCACCCATAATGCATAGAGGCCAAAAATGATCAAATGAGTTGTTTTGGTACACTGTTACAGTACATTGACTTTCAGCTTGAGTGGCTTTTTAGGTTGGATTTTATTTCAAGTTTGTGTGTAGAGTTTGTGAGTATAACATGTGTTATACAGACTCAGCAAATGTTGTTAATGACACAGTACATCTTAATAGGCACAATAAGTCTTAGACTCTTACTCTTAACTAAGAGTTAGACTCTTAGTTCTATGGTCATTCCGAATGACAGGAAAACGCAGAGGAGCGGTCCAGACAGTCATTTCGATAGTAGGGACACCATATATTTAGGGgtttaaaatgtacattttcttTACTGCGTTATACCGAAGTACAGAAGATCAGATTTTGTTTCTGTGAATTGATCAGTTTACAATTATGTTGACGTCAGAGGTGGTTCTCAAAATACAGACCAATGTTTTTTTTGTCAAATTGGTACGttgtcaaaaaaacaaaaacgtgGGTCAATATAACCTCGAGCATTTCAAAAGGTACATTTATATTTCTGCAGTGCATGTATATTTTGAAACGGATATTTAAAGTCAATTTAAAACGTACCCATAAAAGTCCTATTTTCATAATCCTCCATTTTGCAAATATGTCTACTTTTACAAGCTCTATTTTAGGGTTTGTGTTACTCTGTTTGCTGGTTGATTTGTATGTGATTTGTAACTCTTTATGACCATGTCAAACGACATTTTTGCAGGTtggtagaagaaaaaaaagacgttttttttttttttttggactgAAGTTTGATTGAACTTGCATTACCACAAAAAGGAGAGCTTGCCTCGTGCGTAGACATTGTCCCCAGTGTTCTAAGCATCACACGCACTGGATATTAATGTTCTCTTCTCAGTACTGCCTAATGTGAAGTTGtcgtaaaaacaaaaaaacgacAAAATTCTGACAAAGAAAAAAGTCACCTGTTTTGACTTGAGAGGAAAATCTCACATTTCCAGTTTagtagcatttaaaaaaaaatatttatgcaGAAGTCATTGTTTTAACTCCAGTGCTGCCTGAGGTGCTTTGCCCTTTGACACAAGTCCAAAGGTCACTCAGACCACCGGTCTGTTTCGACCTACAGAAGCAGACGTCATTTCATTTTCTCCTGGTCACACACATTTTGTGTTGAGTATTGTATTTGAAATTAAATTGTGCTTTTTAACATTTCATTGTATTTATTAGCTGGTGTTGGCTCTAAAAGTGTCAGTACAACTTTGTGAGAAAGACAATcagagaaaaaaataaagtcaGATTTCCTTACAAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184857 lncRNA upstream 199664 56668881 ~ 56670364 (+) True G162058
TU184858 lncRNA upstream 200191 56669539 ~ 56669837 (+) True G162059
TU184819 lncRNA upstream 221449 56647362 ~ 56648579 (+) True G162033
TU184769 lncRNA upstream 258819 56550698 ~ 56611209 (+) True G161984
TU184772 lncRNA upstream 272189 56547997 ~ 56597839 (+) True G161987
TU185044 lncRNA downstream 2308 57030086 ~ 57032664 (+) True G162240
TU185045 lncRNA downstream 5378 57033156 ~ 57033721 (+) True G162241
TU185046 lncRNA downstream 6229 57034007 ~ 57034367 (+) True G162242
TU185047 lncRNA downstream 6856 57034634 ~ 57035657 (+) True G162243
TU185048 lncRNA downstream 7902 57035680 ~ 57036444 (+) True G162244
XM_021566361.2 mRNA upstream 34842 56725446 ~ 56835186 (+) False LOC110492194
XM_021566614.2 mRNA downstream 261714 57289492 ~ 57302882 (+) True LOC110492362
XM_021566755.2 mRNA downstream 298550 57326328 ~ 57329184 (+) True rpl27a
XR_005039481.1 mRNA downstream 299611 57327389 ~ 57327520 (+) True LOC118944169
XR_005039480.1 mRNA downstream 300542 57328320 ~ 57328450 (+) True LOC118944168
XM_021566728.2 mRNA downstream 302618 57330396 ~ 57331987 (+) False akip1
TU184425 other upstream 617430 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 922783 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2141168 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2516640 54352983 ~ 54353388 (+) True G159415
TU181296 other upstream 2848124 54021608 ~ 54021904 (+) True G158778
TU184934 other downstream 20536 57048314 ~ 57053642 (+) True G162130
TU186506 other downstream 900372 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 1187899 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2917930 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3487854 60515632 ~ 60515880 (+) True G166878

Expression Profile