RNA id: XM_021566546.2


Basic Information

Item Value
RNA id XM_021566546.2
length 2292
RNA type mRNA
GC content 0.45
exon number 8
gene id zgc:113516
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57048311 ~ 57118294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCGGCCACACAAATTGTTAACATTTAGCCCATGTCTATAGTATGTTTTAGCTTTGGCTGTGACTAGTGTCTGTGAGTTTGATGGTTAATGTGTAACCCCCACAAACTAACTGAACCTGGATTCGTGGAGATGTGCTTTGATAAGCCAGCTGGTGTTGCATGCTGAGTCACTGGACACACGACTGGACAAATAGGTGACAAGTTAGCTCACATAATGACAGTTTGACTGGGCCCACACCACCGCAAGACAACGCTGTGTCTGAACACTGTCTGAAAAGCGCATGTTGGACTGAGAATATTTGGACATCACTTTTACATCACTTGGTTGAACGACACTCGGGACTTACTACTACTAGTTGGTCGGAACACCGCTCAACTTGTTCTAAATACTACTCCACTACACTATCTTGGTTGGACTACCACTCAACTTGGTCTGGCTACCGGTCAACGTGGTCTAAAAACGACTTAACCAGCTTGGGCCGACTTCCTCCGACCAAGTTTCAGACCCTGACCCATCTTGAGTAGTAACCCTGCTTCAGGGGGCCATGGAGGGTGGCTCTAAATGCACCAGGGGTCAGCTCCTGcacctggatgtgtgtgtggatgagcaGAAGCCTCGCGGCGGTGTCCTAGAGCTCCTCGGGAGACTAAGGCCCCAGTGGAAGCCACAGGACATCAAGATGAAGgTGTTCACAGAGGGCATCACCAACCAGCTGATGGGCTGCTTCGTGGGCTCACTCCAAGAGTCAGGGGCCGTGCTGGTGCGTGTGTACGGGAGGATGACAGAGCTCTATGTGGAccgggagagagaggtggagatgttCCAGATACTCCACTCTCACAACTGCGGCCCGCAGATCTACTGCAGCTTCCGGAACGGCATCTGCTACGAGTTTGTGAGGGGGACCGTGTTGGACGACACACTGCTCACACAGCCTGCCATCTATAGATTGATTGCGACAGAAATGGGAAAAATCCACTCGATCAAGCTTGAATCGGACAACCCTGTGGAGAATATTCTGTGGAAGAAGATGGCCCAGTTTCTCAAACTTGTCCATAATGCTCTGAGCAACACAACAGCACCACATAGTTCCAAGCTGCTGCAAGAGATCCCTAGCATCGAAACCCTGTCAGATGAAATGGAGACGCTGAAAAGACACCTCTCTCAGATCGGCTCGCCAACCGTGCTGTGTCACAACGACCTCCTGACTAAAAATATAATCTTCGACAACAAAGAGGGCATGGTGAGATTCATTGACTATGAGTATGCTGATTTTAACTACCAGGCCTTCGACATAGGCAACCATTTCAATGAGTTTGCAGGTACGAGTGACACTGACTACAGCCTGTATCCCAGACCTGAACTGCAGAGGGACTGGTTGACTGCTTACCTTGAGAGCTACAAGCACAGTGTGGGGCTGGAGGCCACAGTTACAGAACTAGAGGTTCAGAAGCTCTACGTTCAAGTCTGCAAGTTCTCACTGGCCTCCAACTTTTTATGGGGTCTCTGGGCAATCCTGCAGGCCAGATATTCCTCAATTGATTTTGACTTTGAAAGGTACGCCATAACCCGATTCGATTACTACTTTGAGAAGAAGGAAGAATACTTTGGATTGACTCTCAGTTAGAGAACCGAGCCCGAAGAAATTTAAACAGTTCAGGTCTGCTGCATTTTTATTTGAATTTAAGAGAGTATTTTTATCGACACATAATGCTGAAAGATTGAAAAAGAATGCGGGCAATATAACCATGTGTGTTTCCAGAAAATGTACACTTGATTGTTACAGTTTCCTAAAAAAGAATGGTGTAATTTCAACTGATTCTCCaaatatttgtttcatcacagTGAGGTTGGAGATAACCTCATTTGGCAAATTGACATGGCTTCCAGGCCAGAAAGATGTTCATTTACATTTTAGCCAAGTTACTCAAAGCAACAAGAACTAATACTAAAATCATGAGGGTTATTTCCAGGCTCATTCAACATTAAGCTCAGTTgaggttttttttttaaatgtcccctGGCATGGATTTTCAGTGTTGTATTATTTCAAGATGGTATTACCATCATGCTCTGTTTCAATTGTTTTGTTATAAGACAGCTCTCTTCTGTTGCCCAAAAGATGAATATTAGATAAATAAATTGTTCATACAATGTACATCGAACAgtacattgtacagtatatactgcagCATGCATAGGCAAGTGTTTTTGCTGAACTCCACTTCAGTGCATATCATAACAATTGCATACAAAGCATTTTAGAAATAAAGTGTTGCCTATCCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185595 lncRNA downstream 8992 57035729 ~ 57039319 (-) True LOC118941077
TU185644 lncRNA downstream 19495 57027999 ~ 57028816 (-) True G162792
TU185643 lncRNA downstream 20536 57027285 ~ 57027775 (-) True G162791
TU185654 lncRNA downstream 24837 57023176 ~ 57023474 (-) True G162801
TU185650 lncRNA downstream 33309 57014476 ~ 57015002 (-) True G162798
TU185754 lncRNA upstream 151897 57241759 ~ 57242011 (-) True G162898
TU185989 lncRNA upstream 164285 57254147 ~ 57256689 (-) True G163113
TU185991 lncRNA upstream 170811 57260673 ~ 57260883 (-) True G163115
TU186003 lncRNA upstream 188298 57278160 ~ 57278395 (-) True G163127
TU186006 lncRNA upstream 193598 57283460 ~ 57283742 (-) True G163130
XR_005037354.1 mRNA downstream 11530 57034436 ~ 57036781 (-) False LOC118941077
XR_005037355.1 mRNA downstream 76525 56968148 ~ 56971786 (-) True LOC118941078
XM_021566704.2 mRNA downstream 209490 56835810 ~ 56838821 (-) True LOC110492408
XM_036951029.1 mRNA downstream 487524 56547837 ~ 56560787 (-) True LOC110492166
XM_021566231.2 mRNA downstream 488381 56547837 ~ 56559930 (-) False LOC110492166
XM_036951292.1 mRNA upstream 63056 57152918 ~ 57203499 (-) False LOC110492288
XM_021566491.2 mRNA upstream 63056 57152918 ~ 57235251 (-) False LOC110492288
XM_036951290.1 mRNA upstream 63056 57152918 ~ 57235251 (-) True LOC110492288
XM_036990280.1 mRNA upstream 154897 57244759 ~ 57250155 (-) False LOC100135818
XM_036990282.1 mRNA upstream 154897 57244759 ~ 57250155 (-) False LOC100135818
TU185501 other downstream 217735 56827296 ~ 56830576 (-) False G162657
TU184572 other downstream 746216 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 1104746 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 2319451 54728299 ~ 54728860 (-) True G159890
TU181798 other downstream 2779958 54257426 ~ 54268353 (-) True ambra1b
TU185596 other upstream 24705 57114567 ~ 57117150 (-) True G162745
TU185753 other upstream 150417 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 154519 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 154973 57244835 ~ 57250107 (-) True LOC100135818
TU186027 other upstream 243216 57333078 ~ 57333902 (-) True c2h11orf16

Expression Profile