RNA id: XM_036951290.1


Basic Information

Item Value
RNA id XM_036951290.1
length 3871
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110492288
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57152918 ~ 57235251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACTTCTCAGAGGAAGGTAAACACCCTTTCGCAGTGTCAGAAATGCGATTTCATTCTGCTGCGATAGCAAGTACTGGCGTCTGGCTCTTTTTTTTCACcccctttcttcttcttcttcttcttctccccctccctctgttcccaCATCTGGATCCCAGTTCCTCATTTATTTATGTGGTCTCCCTTGTTTTTGTGGGACTTTAAAAGTCCTCTACCTTGTTCACTTGGCAGTTTCTCCACAAATCTGATGAGGTCTACAATTACATTTCGCCATAACTGGTCAACTCAGCAATTACATGCTTGACCACaaattctctccattctctacaGTGCTGCGGCTCATATGGCAGACAGAAATAGAATAGTTTTCATGTCTGTTTGGACGGCCGCCCAGCTGAAACTATGCTCCGCTGCTTGACTGACAGAGGGATGTGGGCTTTTTCTCCCCAAGAAAAACCTTAAGGTCACAAATCCTTACGAAAGACCGAGGGAGCTCCTTCCAGTTGAGCTACCAGTACCTCAGTTAAGCTGCGAGGAGAGAGGAGCTCGCATGGCACTGGTAGAGGCTTGCTCCTCGACAATGAAAACTCCAGGGGACACTTAACCTTTACGACGCTGACCTGAGGCTGGGGTGCTGTGCTGAAGTGGTATGGACACAGGTAGAATGGCTAGTCCTCAGAGCTCCAGAATGGCTAGTCCTCAGAGCTCCAGAATGGCTAGTCCTCAGAGCTCCAGAATGGCTAGTCCTCAGAGCTCCAGAATGGCTAGTCCTCAGAGCTCCAGAATGGCCACTCCTCAGAGCTCCAGAATGGCCACTCCTCAGAGCTCCAGAATGGCCAGTCCTCAGAGCTCCAGAATGGCCACTCCTCAGAGCTCCAGAATGGCCACTCCTCAGAGCTCCAGACACAGTAGCTCTGTTTCATCATCTCCAATGAGCAGGATGCACTCGCTCCAGGTGGACTCGGTGCAGCGCTGGATGGAGGACCTGCGTCACATGACGGAGGTGGAGTGCATGTGCGTGCTGCAGGCCAAGCCCATCGGCGTGGAGGAGGACACCCAGGGCGAACTCATCGTGGCCACAGGGGACCACGTGGCCCGCAACAACCTGCAGACGCTGCTGCGGCGGGCGCTGGTGGTCAGCACCGAGCTGGGCAAGATGTTCCAGCGGCTGGAGAAGGGCCGCTGGCAGCGGGTCCACAGCACCGCCGTCCGGGCAAACTGCCACGTGCGCTCGCTGGTGCATGAGTATAGCACCGCTCGCAACACCCCCGCAGAGATGCAGAAGTATGAGAAGTCTTTGCTTGAGAAGTGCATGGAGCTGACCACCATAACAGAGAGATGCCTTCATACCGAGGATGAATTCTTCCTGAAGTCCATGAGGGAGGCCATTCACGAGATCCTCACTGATGTCAGCGATTCGTTCAGCCACATGATTGACATGGCCCTGGCCAATGAGATCCAGATCCTGATCAGGCAGATTGAGTCATCAGACAGTGTGTACACCATCGGCAGTGCCATCAGCAACCTGCTTTCCCTCACCCAGGACGGCCCGCAGCTCTGCAGAATCATCGCCAAGGAGGGCGCTGTGGTGGCCCTGTTTAAGATCTGCCGGCAGGACTGCTTCAGCGACCTCTACGCACATGCCCTGAGGACGGTGGCCTCCATATGTTGCGTGGAGGAGGGCATCAACCAGCTAGAGAAGGTGGATGGGATCCTGTGCCTGGCGGACATCCTGACCGACGGGAACAGTGCTGAGGCGGCGAGGGCAGAGGCAGCGGCCGTGGTGGCCCAGATCACCTCGCCCCACCACACCTCCACCCAGCACCTGGGCAGCTTCTTAGAGAGCATGCAGGACATCGTCACTGCCCTCATCAAGTTGTGCGAGAGTGCCTCCTGTGGCGAGGTCTTCCTCCTGGCGTCTGCTGCCCTTGCCAATATCACTTTCTTCGACAGCATGGCCTGTGAGATCCTTCTCCAGCTCCATGCCATCCACATCCTCCTCCAGTCCTGCAAAGACCGCCAAAGAGTGGATACTCCCTACTCTAAAGACCAGGTGGTGACCATCTTGGCAAACCTCTCTGTTTTGGAGCAGTCTTCATCTGAAGTCCTACAAGAGAAGGGTATTGAGAGACTGCTCCAGCTGCTGGGCGAGAAGCCATCCTCCTCCAGTCCATCGGAGGGCGCGGCGTGCGAGCGGGTCCAGCAGAAAGCCGCTGTCACACTGGCCCGTCTGAGCAGAGACCCGGACGTGGCCCAAACAGCCATCCAGCTGCAAGctgTTCCTCGACTAATCGAACTGTGTCGCTCACCAGCAGAGAGGAACAACAGCGACTCTGTACTGGTTGCATGTCTGGCTGCCCTGAGGAGGCTGGCGGCGGGGTGTCCAGACAGCATTGAAGCCGCCGACCACCAGCAACTGATCAAGCCCAGACTGGTGGactctttcctgctgtgctccAACATGGAAGAGAGCTTTGTATAGGAAGATCCAGAGCAGAGGGGTTGGGTGgttagcagtggaggctgctgcgGGGAGGTCGCCTCATAGTAATGTCTGGattggagtaaatggaatggtatgaaacacgtgtttgactccgttctggacattattatgagtcgtcatcccttcagcagcctccactggtgcacAGGTACTGGGGTAGTCGCAGTGAGCTTTTGCTTCAGCCTGAGACTTAAAAACACAGACAAAGGAAGGGTTGATGAAATCAGTCCCTATATCCCAAAGCACGCCTTGACTGTTTACCAAAAAAATCTGAGCATGAACGGAATTTCCGTTAGTCATCTCAGAACTTCCATTCTCAGAGTACAAAACACCAAAATTCGAGGACAAGCTGGTAAGCTAAAATAATGTACATGATGGAAGCATTCATGAATTAGTACCAAAATCTCCTTAGTGTTTTTAACATCCACAGTGTACATATGGGACCATCATTCAACCAAGTGTTAAAAAGTCCGTGGGTGTTGGAACTTTACAAAGTTACCCATAATGAATCAAGAGCTGTTTTTAAAGTGTTAGGCTCCTAACACTGTGGGTGCTAGAAATGAAATTCAGAGTGACAGATAATGAACCAAGAACactttaaaggtagactcagcgatatgatgtAGAAGCAGAACGTAAACAGCGTTTGAAGCGCAAGGCTCAACTTCTCCACTGTTCTGGTGCCCTGGCTACCACACTGAACAACCTGAAGCGAACCTGTGCACATGTGCAGAAACTGTGTGACTGTATAGTCCAGCATCttgctcatctcaatatctgagGTGCTGCTCGTTGCAACATCGTTTCACAGAGTCTACCTTCTAAAGTGTCAGGCTCCCAACACACTGTAGGTGTTGGAAATGAACAGCTTGTTGGTCAGTTCCTTCATCATTTTAAATCAGTCAGTTTGTCAAAGATTTCACTGACGGTCTATTTTGCATCTTGTCAGCTGCCAATTTAATCAGTTGTTAATATATTAGAAATGACTATTGTGCTCTGTTACTTTCAGATAAGAATTTGTTTAATGAGTTTGTGGCACAAACAGTATATTGTCAAGGTATTTGATTACATGATCTAATTAAACCTCCCTAGTTCAGAGGAGTTAATCAAATAGGTTACTGTTTGGAGCGGAAGACGACTCCTGAAGTAGATTTATCTGGCAACAAAGTTCTTTGAAATTGATCATATTGTATTTTACAATCTCGCCTTGGATCTCAAACATTGTATTTGCTACTAAGAAACGTAAATGGAACGTAAAACACAATTATCTGCAGTGAAACtgtttaaaaaaagatatatatttaaaaataaatgacaTTGTATAGCATGCATATACTGTAATAAAGGGAGCATATCTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185669 lncRNA downstream 75497 57075330 ~ 57077421 (-) True G162816
TU185595 lncRNA downstream 113599 57035729 ~ 57039319 (-) True LOC118941077
TU185644 lncRNA downstream 124102 57027999 ~ 57028816 (-) True G162792
TU185643 lncRNA downstream 125143 57027285 ~ 57027775 (-) True G162791
TU185654 lncRNA downstream 129444 57023176 ~ 57023474 (-) True G162801
TU185754 lncRNA upstream 6508 57241759 ~ 57242011 (-) True G162898
TU185989 lncRNA upstream 18896 57254147 ~ 57256689 (-) True G163113
TU185991 lncRNA upstream 25422 57260673 ~ 57260883 (-) True G163115
TU186003 lncRNA upstream 42909 57278160 ~ 57278395 (-) True G163127
TU186006 lncRNA upstream 48209 57283460 ~ 57283742 (-) True G163130
XM_036951362.1 mRNA downstream 34624 57048311 ~ 57118294 (-) True zgc:113516
XM_021566546.2 mRNA downstream 63056 57048311 ~ 57089862 (-) False zgc:113516
XM_021566563.2 mRNA downstream 64146 57048311 ~ 57088772 (-) False zgc:113516
XR_005037354.1 mRNA downstream 116137 57034436 ~ 57036781 (-) False LOC118941077
XR_005037355.1 mRNA downstream 181132 56968148 ~ 56971786 (-) True LOC118941078
XM_036990280.1 mRNA upstream 9508 57244759 ~ 57250155 (-) False LOC100135818
XM_036990282.1 mRNA upstream 9508 57244759 ~ 57250155 (-) False LOC100135818
XM_036990272.1 mRNA upstream 10687 57245938 ~ 57249454 (-) False LOC100135818
XM_036990288.1 mRNA upstream 10687 57245938 ~ 57250141 (-) False LOC100135818
NM_001124214.1 mRNA upstream 11210 57246461 ~ 57250104 (-) False LOC100135818
TU185596 other downstream 35768 57114567 ~ 57117150 (-) True G162745
TU185501 other downstream 322342 56827296 ~ 56830576 (-) False G162657
TU184572 other downstream 850823 56301355 ~ 56302095 (-) True G161823
TU184134 other downstream 1209353 55935671 ~ 55943565 (-) False LOC110491905
TU182463 other downstream 2424058 54728299 ~ 54728860 (-) True G159890
TU185753 other upstream 5028 57240279 ~ 57241372 (-) True G162897
TU185975 other upstream 9130 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other upstream 9584 57244835 ~ 57250107 (-) True LOC100135818
TU186027 other upstream 97827 57333078 ~ 57333902 (-) True c2h11orf16
TU186219 other upstream 360286 57595537 ~ 57600218 (-) False LOC110492469

Expression Profile